Advanced Search (OLGA)

Gene: Trim67 (tripartite motif-containing 67) Rattus norvegicus

Subscribe to Updates

Analyze

Symbol:

Trim67

Name:

tripartite motif-containing 67

RGD ID:

1560667

Description:

Predicted to enable zinc ion binding activity. Predicted to act upstream of or within negative regulation of Ras protein signal transduction; positive regulation of neuron projection development; and positive regulation of ubiquitin-dependent protein catabolic process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm. Orthologous to human TRIM67 (tripartite motif containing 67); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; atrazine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC307938; RGD1560667; similar to TRIM9-like protein TNL; tripartite motif-containing protein 67

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TRIM67 (tripartite motif containing 67)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Trim67 (tripartite motif-containing 67)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Trim67 (tripartite motif containing 67)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TRIM67 (tripartite motif containing 67)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TRIM67 (tripartite motif containing 67)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Trim67 (tripartite motif containing 67)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TRIM67 (tripartite motif containing 67)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TRIM67 (tripartite motif containing 67)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Trim67 (tripartite motif containing 67)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	TRIM67 (tripartite motif containing 67)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Trim67 (tripartite motif-containing 67)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Trim9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	madd-2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	trim67	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	69,659,857 - 69,703,290 (+)	NCBI		GRCr8
mRatBN7.2	19	52,763,991 - 52,805,906 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	52,764,387 - 52,800,422 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	59,549,174 - 59,585,129 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	60,399,955 - 60,436,190 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	62,475,634 - 62,511,589 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	57,554,665 - 57,593,401 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	57,556,694 - 57,592,722 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	68,269,485 - 68,305,962 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	54,976,864 - 55,011,687 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	19	52,132,268 - 52,167,552 (+)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Trim67	Rat	Actin-Accumulation Myopathy		ISO	RGD:1352641	8554872	ClinVar Annotator: match by term: Actin accumulation myopathy	ClinVar	PMID:28492532
Trim67	Rat	congenital disorder of glycosylation type IIq		ISO	RGD:1352641	8554872	ClinVar Annotator: match by term: Congenital disorder of glycosylation, type IIq	ClinVar	PMID:24784932\|PMID:28492532\|PMID:32293671
Trim67	Rat	gastrointestinal stromal tumor		ISO	RGD:1352641	8554872	ClinVar Annotator: match by term: Gastrointestinal stromal tumor	ClinVar	PMID:28492532
Trim67	Rat	parathyroid carcinoma		ISO	RGD:1352641	8554872	ClinVar Annotator: match by term: Parathyroid carcinoma	ClinVar	PMID:28492532

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Trim67	Rat	1,2-dichloroethane	decreases expression	ISO	RGD:1610450	6480464	ethylene dichloride results in decreased expression of TRIM67 mRNA	CTD	PMID:28960355
Trim67	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of TRIM67 mRNA	CTD	PMID:32109520
Trim67	Rat	2,3,7,8-Tetrachlorodibenzofuran	decreases expression	EXP		6480464	2,3,7,8-tetrachlorodibenzofuran results in decreased expression of TRIM67 mRNA	CTD	PMID:32109520
Trim67	Rat	actinomycin D	multiple interactions	ISO	RGD:1352641	6480464	[Dactinomycin co-treated with nutlin 3] results in increased expression of TRIM67 mRNA	CTD	PMID:38460933
Trim67	Rat	aristolochic acid A	increases expression	ISO	RGD:1352641	6480464	aristolochic acid I results in increased expression of TRIM67 mRNA	CTD	PMID:33212167
Trim67	Rat	arsenite(3-)	increases methylation	ISO	RGD:1352641	6480464	arsenite results in increased methylation of TRIM67 promoter	CTD	PMID:23974009
Trim67	Rat	arsenite(3-)	multiple interactions	ISO	RGD:1352641	6480464	arsenite inhibits the reaction [G3BP1 protein binds to TRIM67 mRNA]	CTD	PMID:32406909
Trim67	Rat	atrazine	affects methylation	EXP		6480464	Atrazine affects the methylation of TRIM67 gene	CTD	PMID:35440735
Trim67	Rat	benzo[a]pyrene	increases methylation	ISO	RGD:1352641	6480464	Benzo(a)pyrene results in increased methylation of TRIM67 exon; Benzo(a)pyrene results in increased methylation of TRIM67 more ...	CTD	PMID:27901495
Trim67	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of TRIM67 mRNA	CTD	PMID:25181051
Trim67	Rat	bisphenol A	decreases expression	ISO	RGD:1610450	6480464	bisphenol A results in decreased expression of TRIM67 mRNA	CTD	PMID:32156529
Trim67	Rat	bisphenol A	increases expression	ISO	RGD:1352641	6480464	bisphenol A results in increased expression of TRIM67 mRNA	CTD	PMID:27685785\|PMID:33670352
Trim67	Rat	butanal	decreases expression	ISO	RGD:1352641	6480464	butyraldehyde results in decreased expression of TRIM67 mRNA	CTD	PMID:26079696
Trim67	Rat	camptothecin	increases expression	ISO	RGD:1352641	6480464	Camptothecin results in increased expression of TRIM67 mRNA	CTD	PMID:38460933
Trim67	Rat	cisplatin	increases expression	ISO	RGD:1352641	6480464	Cisplatin results in increased expression of TRIM67 mRNA	CTD	PMID:27392435
Trim67	Rat	clobetasol	decreases expression	ISO	RGD:1610450	6480464	Clobetasol results in decreased expression of TRIM67 mRNA	CTD	PMID:27462272
Trim67	Rat	diquat	increases expression	ISO	RGD:1610450	6480464	Diquat results in increased expression of TRIM67 mRNA	CTD	PMID:36851058
Trim67	Rat	ethanol	increases expression	ISO	RGD:1610450	6480464	Ethanol results in increased expression of TRIM67 mRNA	CTD	PMID:30319688
Trim67	Rat	folic acid	decreases expression	ISO	RGD:1610450	6480464	Folic Acid results in decreased expression of TRIM67 mRNA	CTD	PMID:25629700
Trim67	Rat	lead diacetate	decreases expression	ISO	RGD:1610450	6480464	lead acetate results in decreased expression of TRIM67 mRNA	CTD	PMID:22613225
Trim67	Rat	methamphetamine	decreases expression	ISO	RGD:1610450	6480464	Methamphetamine results in decreased expression of TRIM67 mRNA	CTD	PMID:26307267
Trim67	Rat	niclosamide	increases expression	ISO	RGD:1352641	6480464	Niclosamide results in increased expression of TRIM67 mRNA	CTD	PMID:36318118
Trim67	Rat	Nutlin-3	multiple interactions	ISO	RGD:1352641	6480464	[Dactinomycin co-treated with nutlin 3] results in increased expression of TRIM67 mRNA	CTD	PMID:38460933
Trim67	Rat	ozone	multiple interactions	ISO	RGD:1610450	6480464	[Air Pollutants results in increased abundance of Ozone] which results in increased expression of TRIM67 more ...	CTD	PMID:27106289
Trim67	Rat	potassium dichromate	increases expression	ISO	RGD:1610450	6480464	Potassium Dichromate results in increased expression of TRIM67 mRNA	CTD	PMID:23608068
Trim67	Rat	resveratrol	multiple interactions	ISO	RGD:1352641	6480464	[Plant Extracts co-treated with Resveratrol] results in decreased expression of TRIM67 mRNA	CTD	PMID:23557933
Trim67	Rat	titanium dioxide	decreases methylation	ISO	RGD:1610450	6480464	titanium dioxide results in decreased methylation of TRIM67 gene; titanium dioxide results in decreased methylation more ...	CTD	PMID:35295148
Trim67	Rat	titanium dioxide	increases methylation	ISO	RGD:1610450	6480464	titanium dioxide results in increased methylation of TRIM67 gene	CTD	PMID:35295148

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Trim67	Rat	negative regulation of Ras protein signal transduction	acts_upstream_of_or_within	IEA	UniProtKB:Q505D9\|ensembl:ENSMUSP00000130343	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim67	Rat	negative regulation of Ras protein signal transduction	acts_upstream_of_or_within	ISO	RGD:1610450	1624291	PMID:22337885	RGD	PMID:22337885
Trim67	Rat	positive regulation of neuron projection development	acts_upstream_of_or_within	IEA	UniProtKB:Q505D9\|ensembl:ENSMUSP00000130343	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim67	Rat	positive regulation of neuron projection development	acts_upstream_of_or_within	ISO	RGD:1610450	1624291	PMID:22337885	RGD	PMID:22337885
Trim67	Rat	positive regulation of ubiquitin-dependent protein catabolic process	acts_upstream_of_or_within	ISO	RGD:1610450	1624291	PMID:22337885	RGD	PMID:22337885
Trim67	Rat	positive regulation of ubiquitin-dependent protein catabolic process	acts_upstream_of_or_within	IEA	UniProtKB:Q505D9\|ensembl:ENSMUSP00000130343	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Trim67	Rat	cytoplasm	located_in	IEA	UniProtKB:Q505D9\|ensembl:ENSMUSP00000130343	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Trim67	Rat	cytoplasm	located_in	ISO	RGD:1610450	1624291	PMID:22337885	RGD	PMID:22337885
Trim67	Rat	cytoplasm	is_active_in	IBA	MGI:2137354\|MGI:3045323\|PANTHER:PTN002543425\|RGD:621540\|UniProtKB:Q9C026	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Trim67	Rat	cytoplasm	located_in	IEA	UniProtKB-KW:KW-0963	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Trim67	Rat	cytoskeleton	located_in	IEA	UniProtKB-SubCell:SL-0090	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Trim67	Rat	cytoskeleton	located_in	IEA	UniProtKB-KW:KW-0206	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Trim67	Rat	metal ion binding	enables	IEA	UniProtKB-KW:KW-0479	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Trim67	Rat	protein binding	enables	ISO	RGD:1610450	1624291	PR:O08795\|PR:Q7TME0\|PR:Q7TPB0 PMID:22337885	RGD	PMID:22337885
Trim67	Rat	zinc ion binding	enables	IEA	UniProtKB-KW:KW-0863	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Trim67	Rat	zinc ion binding	enables	IEA	InterPro:IPR000315	1600115	GO_REF:0000002	InterPro	GO_REF:0000002

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:22337885

Trim67
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	69,659,857 - 69,703,290 (+)	NCBI		GRCr8
mRatBN7.2	19	52,763,991 - 52,805,906 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	52,764,387 - 52,800,422 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	19	59,549,174 - 59,585,129 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	60,399,955 - 60,436,190 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	62,475,634 - 62,511,589 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	57,554,665 - 57,593,401 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	57,556,694 - 57,592,722 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	68,269,485 - 68,305,962 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	54,976,864 - 55,011,687 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	19	52,132,268 - 52,167,552 (+)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

TRIM67
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	231,162,058 - 231,221,565 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	231,162,058 - 231,221,565 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	231,297,804 - 231,357,311 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	229,365,297 - 229,423,937 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	227,605,408 - 227,664,049	NCBI
Celera	1	204,563,541 - 204,622,189 (+)	NCBI		Celera
Cytogenetic Map	1	q42.2	NCBI
HuRef	1	201,782,019 - 201,840,709 (+)	NCBI		HuRef
CHM1_1	1	232,572,265 - 232,630,965 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	230,544,922 - 230,604,828 (+)	NCBI		T2T-CHM13v2.0

Trim67
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	125,519,758 - 125,561,443 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	125,519,831 - 125,561,452 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	124,791,317 - 124,834,713 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	124,793,092 - 124,834,713 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	127,316,919 - 127,358,604 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	127,317,652 - 127,353,278 (+)	NCBI		MGSCv36	mm8
Celera	8	129,107,947 - 129,147,602 (+)	NCBI		Celera
Cytogenetic Map	8	E2	NCBI
cM Map	8	72.81	NCBI

Trim67
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955492	7,543,916 - 7,578,886 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955492	7,538,492 - 7,578,257 (-)	NCBI	ChiLan1.0	ChiLan1.0

TRIM67
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	17,983,930 - 18,044,747 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	18,187,559 - 18,247,407 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	206,710,490 - 206,770,111 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	211,734,311 - 211,789,842 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

TRIM67
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	8,211,013 - 8,259,907 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	8,213,308 - 8,259,342 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	8,202,830 - 8,252,031 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	8,235,963 - 8,285,169 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	8,238,783 - 8,284,632 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	8,239,440 - 8,289,002 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	8,363,230 - 8,411,712 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	8,590,060 - 8,640,369 (-)	NCBI		UU_Cfam_GSD_1.0

Trim67
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	43,288,901 - 43,327,893 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936484	19,456,759 - 19,492,103 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936484	19,456,756 - 19,495,047 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TRIM67
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	59,260,065 - 59,302,591 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	59,260,070 - 59,303,244 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	63,924,060 - 63,967,518 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TRIM67
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	68,434,458 - 68,488,471 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	68,434,543 - 68,487,727 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	70,340,169 - 70,395,834 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Trim67
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624775	18,465,786 - 18,498,937 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624775	18,460,463 - 18,499,349 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Trim67
292 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	71
Count of miRNA genes:	66
Interacting mature miRNAs:	71
Transcripts:	ENSRNOT00000032359
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313395	Anxrr26	Anxiety related response QTL 26			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	19	49976481	53225766	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	15630201	57337602	Rat
61350	Bp32	Blood pressure QTL 32		0.012	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	19	20483575	57337602	Rat
5135224	Leukc1	Leukocyte quantity QTL 1			eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	19	44340214	55283277	Rat
724546	Kidm3	Kidney mass QTL 3	3.1		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	19	29322490	57337602	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	15455860	57337602	Rat
1358200	Insglur2	Insulin/glucose ratio QTL 2	4.1		blood glucose amount (VT:0000188)	serum glucose level (CMO:0000543)	19	33838214	55283146	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2187927	56457239	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	4096155	55283277	Rat
2298478	Eau8	Experimental allergic uveoretinitis QTL 8		0.0163	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	19	17154433	57337602	Rat

D19Got125

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	52,781,723 - 52,781,856 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	57,574,032 - 57,574,164	NCBI	Rnor6.0
Rnor_5.0	19	68,287,272 - 68,287,404	UniSTS	Rnor5.0
RGSC_v3.4	19	54,993,116 - 54,993,248	UniSTS	RGSC3.4
Celera	19	52,148,929 - 52,149,062	UniSTS
Cytogenetic Map	19	q12	UniSTS

BF396236

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	52,774,548 - 52,774,671 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	57,566,856 - 57,566,978	NCBI	Rnor6.0
Rnor_5.0	19	68,280,096 - 68,280,218	UniSTS	Rnor5.0
RGSC_v3.4	19	54,987,026 - 54,987,148	UniSTS	RGSC3.4
RH 3.4 Map	19	738.9	UniSTS
Cytogenetic Map	19	q12	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
7	5	31	113	49	45	18	14	18	6	130	68	93	35	51	27


RefSeq Transcripts	NM_001135715	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601304	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278073	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278074	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC105521	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000032359 ⟹ ENSRNOP00000032148

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	19	52,764,387 - 52,800,422 (+)	Ensembl
Rnor_6.0 Ensembl	19	57,556,694 - 57,592,722 (+)	Ensembl

RefSeq Acc Id:

NM_001135715 ⟹ NP_001129187

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	69,661,777 - 69,697,804 (+)	NCBI
mRatBN7.2	19	52,764,387 - 52,800,422 (+)	NCBI
Rnor_6.0	19	57,556,694 - 57,592,722 (+)	NCBI
Rnor_5.0	19	68,269,485 - 68,305,962 (+)	NCBI
RGSC_v3.4	19	54,976,864 - 55,011,687 (+)	RGD
Celera	19	52,132,268 - 52,167,552 (+)	RGD

Sequence:

show sequence

AGGGGCGGGGCGCTCGCAGAAGGAAGACTCGGGGCAGCGGCGCTGCGGAGCCCGGCTCAGTAGCCTTGCTGGCTCACAGCAGCGAGTCACTGGTCCTTCGTAGAGTGGAGGCACGAGGTACCCCTGAC
GGCGCTGCTGCTGCCTATTCACCACCTGGACAACCTCGGAGGCCACTGCGAGGGCTGCTGGCCACCTTCATACGGCCGCCTCTGGTGAGGGAGCCTCGCCCTCAGGAGGTGAGGACCCCTCCTTTCTC
TGGCGGCCAAGCGTCTTAGGGCGGTGGCCTGAGGACAGAGAGGGGGCGTGCCACCCTCGGGTGAAGACAGCATGCCCGTGTAATACCCCCGCCTCCTGACTCAAGAGCGCTGACATCGCCTGCCCAGC
TGCGCTTGTCTTCGGAGCTTTGACCATCCTTGGCTGGTCCCGAGCGGCTCTGGCCGCGGGCGCGGCGATGGAGGAGGAGCTGAAGTGCCCAGTGTGCGGATCCCTGTTCCGGGAGCCCATCATCCTGC
CCTGTTCTCACAATGTCTGCTTGCCGTGCGCCCGCACCATCGCGGTTCAGACCCCGGACGGCGAGCAGCACCTGCCCCCGCCGCTCCTTCTTTCGCGGGGTGCCGCCGCCGCCGCCGCCGCGCCCCCT
CCGGATCAGGATGCAGCGGCCGGCGCGACCTGCGGAGGCGCCGGAGCTAGTACAGCCGGAGGCCTGGGCGGCGGGGCGGCCGGTGGCGGAGACCACGCGGACAAGCTGAGCTTGTATAGCGAGACTGA
CAGCGGCTATGGCTCCTACACCCCCAGCCTCAAGTCCCCCAATGGAGTCCGCGTGCTGCCCATGGTGCCTGCGCCTCCGGGTTCATCTGCCGCCGCGGCCCGAGGCGCCGCCTGCTCCTCGCTCTGCT
CGTCCTCCAGCTCCATCACCTGCCCGCAGTGCCACCGCAGCGCCTCCCTGGATCACCGCGGCCTGCGAGGCTTCCAGCGCAACCGGCTACTGGAGGGCATCGTGCAGCGGTACCAGCAGGGCCGTGGG
GTTGCTGCGGGGGCATCTGCAGCCCCGGCGGTGGCCATCTGCCAGCTGTGCGACCGCACCCCACCGGAGCCGGCAGCCACTCTCTGCGAGCAATGCGACGTGCTCTATTGCGCCACCTGCCAGCTCAA
GTGCCACCCGTCCCGGGGCCCCTTCGCTAAGCATCGGCTAGTTCAGCCGCCGCCGCCGCCCGCACCCCCAGAGGCTACCTCTGCTTCAGTCGGTACTTCCACCGCCTCCAGCGCAGGAGGATGCAGGA
GCCCAGGGGGTGCCGGGGCCCCCGTGCCTCGAAAGTTCCCCACGTGCCCGGAGCACGAGATGGAGAACTACAGCATGTACTGCGTGAGCTGTCGGAGCCCGGTGTGCTACATGTGCCTAGAGGAAGGC
AGGCATGGCAAGCACGAGGTGAAGCCGCTGGGGGCAACGTGGAAACAGCACAAGGCCCAGCTGTCTCAGGCCTTAAACGGGGTTTCAGACAAGGCCAAAGAGGCGAAGGAGTTCCTGGTTCAGCTCAA
GAACATACTGCAGCAGATCCAGGAAAATGGACTGGACTATGAAGCCTGCCTGGTGGCCCAGTGTGACGCCCTGGTGGACGCCCTGACTCGGCAGAAAGCCAAGCTGCTCACCAAGGTCACCAAGGAGA
GGGAACAGAAGCTGAAGATGGTTTGGGACCAGATCAACCACTGCACTCTGAAGCTGCGCCAGTCCACTGGCCTGATGGAGTACTGCCTGGAGGTGATCAAGGAGGACGACCCCTCTGGGTTCCTGCAG
ATCTCAGACGCCCTGATCAAGCGTGTGCAGACCTCACAGGAGCAGTGGGTCAAAGGTGCCCTGGAGCCCAAAGTGTCTGCGGAGTTCGACCTGACCCTGGACAGCGAGCCGCTGCTGCAAGCCATCCA
CCAGCTGGATTTCGTCCAGATGAAATTGCCACCTGTACCCCTGCTGCAGCTGGAGAAGTGCTGCACCCGTAATAACAGCGCCACCCTGGCCTGGAGGACCCCGCCCTTCACCCACAGCCCTGCTGATG
GCTACATCCTGGAGCTGGATGATGGCGACGGAGGGCAGTTCCGGGAAGTGTACGTCGGCAAGGAGACCCTGTGCACCATCGACGGGCTCCACTTTAACAGCACCTACAATGCCAGAGTGAAAGCCTTC
AACTCCTCTGGTGTTGGGCCCTACAGCAAGACTGTGGTCCTGCAGACCTCTGACGTGGCCTGGTTCACTTTCGACCCCAACTCTGGCCATCGGGACATCATCTTATCTAACGACAACCAGACAGCCAC
CTGTAGCAGCTATGACGACCGGGTGGTGCTAGGCACAGCTGCATTCTCCAAAGGTGCGCACTACTGGGAGCTGCACGTCGACCGGTACGACAACCACCCAGACCCAGCCTTCGGGGTGGCCAGGGCCA
GCGTGGTCAAGGACATGATGCTGGGTAAAGACGACAAGGCCTGGGCCATGTACGTGGACAACAACCGCAGCTGGTTCATGCACTGCAACTCCCACACCAACAGGACCGAAGGCGGTGTATGCAAGGGG
GCCACTGTGGGCGTGCTGCTGGACCTGAACAAGCACACTCTGACCTTCTTCATCAACGGGCAACAACAGGGCCCCACAGCCTTCAGCCACGTGGATGGGGTCTTCATGCCTGCCCTCAGCCTCAACCG
AAACGTGCAGGTCACCCTGCACACAGGACTGGAGGTGCCAACAAACCTAGGACGGCCAAAGCTGTCAGGCAACTAG

hide sequence

RefSeq Acc Id:

XM_017601304 ⟹ XP_017456793

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	69,659,857 - 69,703,290 (+)	NCBI
mRatBN7.2	19	52,763,991 - 52,805,906 (+)	NCBI
Rnor_6.0	19	57,554,665 - 57,593,401 (+)	NCBI

Sequence:

show sequence

GCTGAGCCATCTCTCCAGCCCACCTTCCAACTTCTTGAAGAGCTTTCAGTAACCCAAGCTATGGCTCGCCTAGACCTCGGGTTCAATAGTGACTTTCTGAAGATTTTCTTTTTCAATGTATTGTGGGC
AGGACCAGGTAACTGAAGCGCTGCCTTCATCTCCGCCCTGGACACAGCACTGCTTCCTGAAGAACAACGGTGGTGGGGCTCATTTGATGGCTGCGGTTTAGCAGCAGTTAAACGTGGAGCCAGGCTTC
CGTAAGCTATTCAGTTGACCTGAGATGCTTAGAAAGTAGTCCACATCACTTACCGTAACAATTTGGCCAGATCACATGTGTGTTGTTACGGTGTTGTCATAGTAGTTTCTGGACTAGGCCGGTGGAAG
CAAGCTGCAGGACCCCGGGGAGTCATGTAAAGATATGGGCTTCACTGGGGCGCTTTGCCGTGACTTTCCTGGCGAACTCCCTCCCACCAGAGGTTGTATCCCTTAGGGAACGAGCCAGACCAAGGCAG
GTGCCTCATTAATCTCTGGCTTCATTCTCTCCTGCTGACTTTCCAAATGCTGGCAGCGGCTGGGGCCCTGCATTCCTTCAACAGGAGTCTGCGCCACGATTGCTGTTTTTGTTTTCGTCCGGCTGAGT
CTTGCTATGAAACACCCAGACTAGCTTGGAAATTACTATGTAGCCCAAGCTGGCCTCTAACTCATAACAATCCTTCTACATCGGCCTCCCAAGTGCTAGAATTACAAGCACGAGCCAGCATGCTGGCT
GACACATCCTTTTTAAATCGACAATTTCCTTGTCTGTTCCGAATCGGCGTGGATCGCAGAGGAAGAGAGGGCCGCGTGGCGCGCATTTCGCTCCACGCGCTCTTCCCTCCCCAGCGCGCTCTTCCCGT
CCCCGGCCCGACCTTAGCTCCATGCTCAGCACACCCTTCCCTTCTCTGGGCAGCCCGCACTACCCCGGTGCGGAACAGCCGGGCAGACGGCGGGAAGAGCCCGGCAGCCAGGCGCGCGGGCGGCGACG
TTGCAGGAAGCTCCCATTCATAAAGCGAACACCTGCTCGCGGCCTCCTGCCTCTCCCCAGCCCCGAGCAGCCCGGGGAGGTTGTATTTGGCAACCTTCACGGTGTCCTCGCCAAGTCCTCGCCGCTCT
GGGCCTCATCGTCCACGACTAGCCCGGGTAGAACCGAGGAGACAAAAAAGGCTTGTGGAACGATGCGTAAATGAAACCTCGCCCTTTGGCGCGAGGCTGTCCGACATTTTGTGCCTTGAAAGCTTTTT
GCGGGGGAAATAGATTTAGGTAGCGACTGTCGCGCTGTGCTGGGGGGCCTTTTCCAAGCGACTGGCCTTTTAGGGACCGCTGTTTACGCTTTCATGGTGGCGGGAGTGGGCAGGGCAGGAGCTGGCCA
GGGATGCTCTGGCAAGCGGGGCGGGGCGCCGGGCTAATTCACCGTGCAGACTCCATCCGAATCGGAGCAGCTCTCCACAATGATCCTCCCCACGAAGCCCTCCGACCCGCCCCTGACTGCCAGCCGCG
AGAGGCGAGCCCTCATTCGCTGAGCTGACGCCTGGCTCCCCGCCCCCCGCCCCGTTACTCTCGCTCTGGAAATTACAACTCCTGGGCGCGCGGCGCGGCGCGGCGCGGCGGGCGGGCGCGGGAGGCGG
CGGGACCGGGAGGGGATTCCCGAGCCAGCGGGTGTTCACCACCCCCCCACCCCCGCCGCTGCAGCGTGGCGCGGCCAAGGTCAGGGGAACCGCAGGAACCGGAGCCGGCGAGGCGAGCCCGGGACGCT
GCTCAATACGGGCCTGTGAGGAGGCAGCTCCGAAAGCAGCGGCCCGAGCAGCAGGACGGCGACGGTCTCCGGGCCGGGGGATGCCGAGGTGGCCGTGGTGGCACAACAGCCTGGCGGGGGATGCGCCT
GGGGTGCGGGCGCGGATTCCCTGCCCATCCGCTCGCGGGCGCTGTCCGCCGTCTGGTGGTGCTGAACCAGCCCTGGCCCCGCTGCTCCCGCACTGGCCAAGAGCTGGTTAGGGGCGGGGCGCTCGCAG
AAGGAAGACTCGGGGCAGCGGCGCTGCGGAGCCCGGCTCAGTAGCCTTGCTGGCTCACAGCAGCGAGTCACTGGTCCTTCGTAGAGTGGAGGCACGAGGTACCCCTGACGGCGCTGCTGCTGCCTATT
CACCACCTGGACAACCTCGGAGGCCACTGCGAGGGCTGCTGGCCACCTTCATACGGCCGCCTCTGGTGAGGGAGCCTCGCCCTCAGGAGGTGAGGACCCCTCCTTTCTCTGGCGGCCAAGCGTCTTAG
GGCGGTGGCCTGAGGACAGAGAGGGGGCGTGCCACCCTCGGGTGAAGACAGCATGCCCGTGTAATACCCCCGCCTCCTGACTCAAGAGCGCTGACATCGCCTGCCCAGCTGCGCTTGTCTTCGGAGCT
TTGACCATCCTTGGCTGGTCCCGAGCGGCTCTGGCCGCGGGCGCGGCGATGGAGGAGGAGCTGAAGTGCCCAGTGTGCGGATCCCTGTTCCGGGAGCCCATCATCCTGCCCTGTTCTCACAATGTCTG
CTTGCCGTGCGCCCGCACCATCGCGGTTCAGACCCCGGACGGCGAGCAGCACCTGCCCCCGCCGCTCCTTCTTTCGCGGGGTGCCGCCGCCGCCGCCGCCGCGCCCCCTCCGGATCAGGATGCAGCGG
CCGGCGCGACCTGCGGAGGCGCCGGAGCTAGTACAGCCGGAGGCCTGGGCGGCGGGGCGGCCGGTGGCGGAGACCACGCGGACAAGCTGAGCTTGTATAGCGAGACTGACAGCGGCTATGGCTCCTAC
ACCCCCAGCCTCAAGTCCCCCAATGGAGTCCGCGTGCTGCCCATGGTGCCTGCGCCTCCGGGTTCATCTGCCGCCGCGGCCCGAGGCGCCGCCTGCTCCTCGCTCTGCTCGTCCTCCAGCTCCATCAC
CTGCCCGCAGTGCCACCGCAGCGCCTCCCTGGATCACCGCGGCCTGCGAGGCTTCCAGCGCAACCGGCTACTGGAGGGCATCGTGCAGCGGTACCAGCAGGGCCGTGGGGTTGCTGCGGGGGCATCTG
CAGCCCCGGCGGTGGCCATCTGCCAGCTGTGCGACCGCACCCCACCGGAGCCGGCAGCCACTCTCTGCGAGCAATGCGACGTGCTCTATTGCGCCACCTGCCAGCTCAAGTGCCACCCGTCCCGGGGC
CCCTTCGCTAAGCATCGGCTAGTTCAGCCGCCGCCGCCGCCCGCACCCCCAGAGGCTACCTCTGCTTCAGTCGGTACTTCCACCGCCTCCAGCGCAGGAGGATGCAGGAGCCCAGGGGGTGCCGGGGC
CCCCGTGCCTCGAAAGTTCCCCACGTGCCCGGAGCACGAGATGGAGAACTACAGCATGTACTGCGTGAGCTGTCGGAGCCCGGTGTGCTACATGTGCCTAGAGGAAGGCAGGCATGGCAAGCACGAGG
TGAAGCCGCTGGGGGCAACGTGGAAACAGCACAAGGCCCAGCTGTCTCAGGCCTTAAACGGGGTTTCAGACAAGGCCAAAGAGGCGAAGGAGTTCCTGGTTCAGCTCAAGAACATACTGCAGCAGATC
CAGGAAAATGGACTGGACTATGAAGCCTGCCTGGTGGCCCAGTGTGACGCCCTGGTGGACGCCCTGACTCGGCAGAAAGCCAAGCTGCTCACCAAGGTCACCAAGGAGAGGGAACAGAAGCTGAAGAT
GGTTTGGGACCAGATCAACCACTGCACTCTGAAGCTGCGCCAGTCCACTGGCCTGATGGAGTACTGCCTGGAGGTGATCAAGGAGGACGACCCCTCTGGGTTCCTGCAGATCTCAGACGCCCTGATCA
AGCGTGTGCAGACCTCACAGGAGCAGTGGGTCAAAGGTGCCCTGGAGCCCAAAGTGTCTGCGGAGTTCGACCTGACCCTGGACAGCGAGCCGCTGCTGCAAGCCATCCACCAGCTGGATTTCGTCCAG
ATGAAATGTAGGGTGCCACCTGTACCCCTGCTGCAGCTGGAGAAGTGCTGCACCCGTAATAACAGCGCCACCCTGGCCTGGAGGACCCCGCCCTTCACCCACAGCCCTGCTGATGGCTACATCCTGGA
GCTGGATGATGGCGACGGAGGGCAGTTCCGGGAAGTGTACGTCGGCAAGGAGACCCTGTGCACCATCGACGGGCTCCACTTTAACAGCACCTACAATGCCAGAGTGAAAGCCTTCAACTCCTCTGGTG
TTGGGCCCTACAGCAAGACTGTGGTCCTGCAGACCTCTGACGTGGCCTGGTTCACTTTCGACCCCAACTCTGGCCATCGGGACATCATCTTATCTAACGACAACCAGACAGCCACCTGTAGCAGCTAT
GACGACCGGGTGGTGCTAGGCACAGCTGCATTCTCCAAAGGTGCGCACTACTGGGAGCTGCACGTCGACCGGTACGACAACCACCCAGACCCAGCCTTCGGGGTGGCCAGGGCCAGCGTGGTCAAGGA
CATGATGCTGGGTAAAGACGACAAGGCCTGGGCCATGTACGTGGACAACAACCGCAGCTGGTTCATGCACTGCAACTCCCACACCAACAGGACCGAAGGCGGTGTATGCAAGGGGGCCACTGTGGGCG
TGCTGCTGGACCTGAACAAGCACACTCTGACCTTCTTCATCAACGGGCAACAACAGGGCCCCACAGCCTTCAGCCACGTGGATGGGGTCTTCATGCCTGCCCTCAGCCTCAACCGAAACGTGCAGGTC
ACCCTGCACACAGGACTGGAGGTGCCAACAAACCTAGGACGGCCAAAGCTGTCAGGCAACTAGCCTGGTGGCTCCCGCTGCCTAGCTGGCCGCGATGGAGGGCCTCGAGGAGGACCAGGACACAGCAC
AAAGTCCTGGGTACCAGCAGCCAGCGGACATCTGAAGATGCTTTTCGGCGGGGGATTGAGAATGAATGCAATACAAGCCACACGACCATACTGTGATCCACTATGTCAGGAGTGGCTTTTCACCTCCA
TGCCACAGGGCTATGGTCCCCAGGGTGCCCTCAAGACAGTGCTCCGGACAGACACCTTTTGTTTCCAGCTAATGTTTTCTGACGTCTCTTTGAAACTTTGATTTCCTCTTAAATTTTTTTCTTTTTTC
TTTTTTCTTCTGGAGGGAGAGAGGGAGACAGACTCTGAGACTTGTATATCCCAGGATGCATCTGCGCTGTGATGTCACTTCCATGCCTGCGTGCAACCCGTTGCTGGGACTCTGCTCCTTCTGGAGTC
CCAGGCTTGTCATCTCTGTGGGAAGGAACTGACCTTGAGCTTCTGGGATATGCAGTTTTCAATTCACTGCAAACCAATTCAGAGGGGACATTAATCACTAATGAGCTGCTAGGACCCTTCAGAAAGGC
TTCCTTAGGGTCTGTAACATTATCCATGTTCTGTCGATCTCCCTCTCCCTCCCCCACACACACAGAAACACACACACACACACACACACACACACACACACA

hide sequence

RefSeq Acc Id:

XM_063278073 ⟹ XP_063134143

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	69,659,857 - 69,697,268 (+)	NCBI

RefSeq Acc Id:

XM_063278074 ⟹ XP_063134144

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	69,659,857 - 69,697,267 (+)	NCBI


Protein RefSeqs	NP_001129187	(Get FASTA)	NCBI Sequence Viewer
	XP_017456793	(Get FASTA)	NCBI Sequence Viewer
	XP_063134143	(Get FASTA)	NCBI Sequence Viewer
	XP_063134144	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL96740	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000032148
	ENSRNOP00000032148.4

RefSeq Acc Id:

NP_001129187 ⟸ NM_001135715

- UniProtKB:

D3ZTX1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEEELKCPVCGSLFREPIILPCSHNVCLPCARTIAVQTPDGEQHLPPPLLLSRGAAAAAAAPPPDQDAAAGATCGGAGASTAGGLGGGAAGGGDHADKLSLYSETDSGYGSYTPSLKSPNGVRVLPMV
PAPPGSSAAAARGAACSSLCSSSSSITCPQCHRSASLDHRGLRGFQRNRLLEGIVQRYQQGRGVAAGASAAPAVAICQLCDRTPPEPAATLCEQCDVLYCATCQLKCHPSRGPFAKHRLVQPPPPPAP
PEATSASVGTSTASSAGGCRSPGGAGAPVPRKFPTCPEHEMENYSMYCVSCRSPVCYMCLEEGRHGKHEVKPLGATWKQHKAQLSQALNGVSDKAKEAKEFLVQLKNILQQIQENGLDYEACLVAQCD
ALVDALTRQKAKLLTKVTKEREQKLKMVWDQINHCTLKLRQSTGLMEYCLEVIKEDDPSGFLQISDALIKRVQTSQEQWVKGALEPKVSAEFDLTLDSEPLLQAIHQLDFVQMKLPPVPLLQLEKCCT
RNNSATLAWRTPPFTHSPADGYILELDDGDGGQFREVYVGKETLCTIDGLHFNSTYNARVKAFNSSGVGPYSKTVVLQTSDVAWFTFDPNSGHRDIILSNDNQTATCSSYDDRVVLGTAAFSKGAHYW
ELHVDRYDNHPDPAFGVARASVVKDMMLGKDDKAWAMYVDNNRSWFMHCNSHTNRTEGGVCKGATVGVLLDLNKHTLTFFINGQQQGPTAFSHVDGVFMPALSLNRNVQVTLHTGLEVPTNLGRPKLS
GN

hide sequence

RefSeq Acc Id:

XP_017456793 ⟸ XM_017601304

- Peptide Label:

isoform X3

- Sequence:

show sequence

MEEELKCPVCGSLFREPIILPCSHNVCLPCARTIAVQTPDGEQHLPPPLLLSRGAAAAAAAPPP
DQDAAAGATCGGAGASTAGGLGGGAAGGGDHADKLSLYSETDSGYGSYTPSLKSPNGVRVLPMVPAPPGSSAAAARGAACSSLCSSSSSITCPQCHRSASLDHRGLRGFQRNRLLEGIVQRYQQGRGV
AAGASAAPAVAICQLCDRTPPEPAATLCEQCDVLYCATCQLKCHPSRGPFAKHRLVQPPPPPAPPEATSASVGTSTASSAGGCRSPGGAGAPVPRKFPTCPEHEMENYSMYCVSCRSPVCYMCLEEGR
HGKHEVKPLGATWKQHKAQLSQALNGVSDKAKEAKEFLVQLKNILQQIQENGLDYEACLVAQCDALVDALTRQKAKLLTKVTKEREQKLKMVWDQINHCTLKLRQSTGLMEYCLEVIKEDDPSGFLQI
SDALIKRVQTSQEQWVKGALEPKVSAEFDLTLDSEPLLQAIHQLDFVQMKCRVPPVPLLQLEKCCTRNNSATLAWRTPPFTHSPADGYILELDDGDGGQFREVYVGKETLCTIDGLHFNSTYNARVKA
FNSSGVGPYSKTVVLQTSDVAWFTFDPNSGHRDIILSNDNQTATCSSYDDRVVLGTAAFSKGAHYWELHVDRYDNHPDPAFGVARASVVKDMMLGKDDKAWAMYVDNNRSWFMHCNSHTNRTEGGVCK
GATVGVLLDLNKHTLTFFINGQQQGPTAFSHVDGVFMPALSLNRNVQVTLHTGLEVPTNLGRPKLSGN

hide sequence

Ensembl Acc Id:

ENSRNOP00000032148 ⟸ ENSRNOT00000032359

RefSeq Acc Id:	XP_063134143 ⟸ XM_063278073
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063134144 ⟸ XM_063278074
- Peptide Label:	isoform X2

Protein Domains

B box-type B30.2/SPRY COS Fibronectin type-III

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZTX1-F1-model_v2	AlphaFold	D3ZTX1	1-770	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-5230	BioCyc
Ensembl Genes	ENSRNOG00000019024	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000032359	ENTREZGENE
	ENSRNOT00000032359.5	UniProtKB/TrEMBL
Gene3D-CATH	1.20.5.170	UniProtKB/TrEMBL
	2.60.120.920	UniProtKB/TrEMBL
	2.60.40.10	UniProtKB/TrEMBL
	3.30.40.10	UniProtKB/TrEMBL
	4.10.830.40	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	B30.2/SPRY_sf	UniProtKB/TrEMBL
	B302	UniProtKB/TrEMBL
	Bbox_C	UniProtKB/TrEMBL
	ConA-like_dom	UniProtKB/TrEMBL
	COS_domain	UniProtKB/TrEMBL
	E3_ligase_FN3/SPRY	UniProtKB/TrEMBL
	FN3_sf	UniProtKB/TrEMBL
	FN_III	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	SPRY_rcpt	UniProtKB/TrEMBL
	Znf_B-box	UniProtKB/TrEMBL
	Znf_RING	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
	Znf_RING_CS	UniProtKB/TrEMBL
KEGG Report	rno:307938	UniProtKB/TrEMBL
NCBI Gene	307938	ENTREZGENE
PANTHER	E3 UBIQUITIN-PROTEIN LIGASE TRIM36-RELATED	UniProtKB/TrEMBL
	TRIPARTITE MOTIF-CONTAINING PROTEIN 67	UniProtKB/TrEMBL
Pfam	ANCHR-like_BBOX	UniProtKB/TrEMBL
	fn3	UniProtKB/TrEMBL
	SPRY	UniProtKB/TrEMBL
	zf-B_box	UniProtKB/TrEMBL
PhenoGen	Trim67	PhenoGen
PROSITE	B302_SPRY	UniProtKB/TrEMBL
	COS	UniProtKB/TrEMBL
	FN3	UniProtKB/TrEMBL
	ZF_BBOX	UniProtKB/TrEMBL
	ZF_RING_1	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000019024	RatGTEx
SMART	BBC	UniProtKB/TrEMBL
	BBOX	UniProtKB/TrEMBL
	FN3	UniProtKB/TrEMBL
	RING	UniProtKB/TrEMBL
	SPRY	UniProtKB/TrEMBL
Superfamily-SCOP	B-box zinc-binding domain	UniProtKB/TrEMBL
	ConA_like_lec_gl	UniProtKB/TrEMBL
	FN_III-like	UniProtKB/TrEMBL
	RING/U-box	UniProtKB/TrEMBL
UniProt	D3ZTX1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-12-01	Trim67	tripartite motif-containing 67	RGD1560667	similar to TRIM9-like protein TNL	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1560667	similar to TRIM9-like protein TNL	RGD1560667_predicted	similar to TRIM9-like protein TNL (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1560667_predicted	similar to TRIM9-like protein TNL (predicted)	LOC307938	similar to TRIM9-like protein TNL	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC307938	similar to TRIM9-like protein TNL			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Send us a Message

Imported Disease Annotations - ClinVar