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Gene: Prdm10 (PR/SET domain 10) Rattus norvegicus

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Symbol:

Prdm10

Name:

PR/SET domain 10

RGD ID:

1560384

Description:

Predicted to enable DNA-binding transcription factor activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be part of transcription repressor complex. Predicted to be active in chromatin and nucleus. Human ortholog(s) of this gene implicated in Birt-Hogg-Dube syndrome. Orthologous to human PRDM10 (PR/SET domain 10); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC500964; PR domain 10; PR domain containing 10; PR domain zinc finger protein 10; RGD1560384; similar to PR domain containing 10 isoform 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PRDM10 (PR/SET domain 10)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Treefam
Mus musculus (house mouse):	Prdm10 (PR domain containing 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Prdm10 (PR/SET domain 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PRDM10 (PR/SET domain 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PRDM10 (PR/SET domain 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Prdm10 (PR/SET domain 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PRDM10 (PR/SET domain 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PRDM10 (PR/SET domain 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Prdm10 (PR/SET domain 10)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	PRDM10 (PR/SET domain 10)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Prdm10 (PR domain containing 10)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	prdm10 (PR domain containing 10)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	prdm10	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	37,982,210 - 38,085,907 (+)	NCBI		GRCr8
mRatBN7.2	8	29,724,011 - 29,827,757 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	29,724,245 - 29,826,080 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	8	32,419,921 - 32,526,357 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	32,452,885 - 32,526,351 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	32,445,116 - 32,551,157 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	31,067,787 - 31,137,510 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	8	31,182,995 - 31,286,272 (+)	NCBI		Celera
Cytogenetic Map	8	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Prdm10	Rat	Birt-Hogg-Dube syndrome		ISO	RGD:1348926	8554872	ClinVar Annotator: match by term: Birt-Hogg-Dube syndrome 2	ClinVar	PMID:25741868
Prdm10	Rat	chromosome 11 partial duplication syndrome		ISO	RGD:1348926	8554872	ClinVar Annotator: match by term: Distal trisomy 11q	ClinVar	PMID:25741868
Prdm10	Rat	Dwarfism		ISO	RGD:1348926	8554872	ClinVar Annotator: match by term: Short stature	ClinVar	PMID:32581362
Prdm10	Rat	Jacobsen Syndrome		ISO	RGD:1348926	8554872	ClinVar Annotator: match by term: Paris-Trousseau thrombocytopenia	ClinVar	PMID:32581362
Prdm10	Rat	schizophrenia		ISO	RGD:1348926	8554872	ClinVar Annotator: match by term: Schizophrenia	ClinVar	PMID:21681106\|PMID:30208311

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Prdm10	Rat	Birt-Hogg-Dube syndrome		ISO	RGD:1348926	7240710		OMIM

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Prdm10	Rat	17beta-estradiol	multiple interactions	EXP		6480464	[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of PRDM10 mRNA	CTD	PMID:32741896
Prdm10	Rat	17beta-estradiol	decreases expression	ISO	RGD:1348926	6480464	Estradiol results in decreased expression of PRDM10 mRNA	CTD	PMID:31614463
Prdm10	Rat	17beta-estradiol 3-benzoate	multiple interactions	EXP		6480464	[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of PRDM10 mRNA	CTD	PMID:32741896
Prdm10	Rat	3,4-methylenedioxymethamphetamine	decreases expression	ISO	RGD:1614773	6480464	N-Methyl-3,4-methylenedioxyamphetamine results in decreased expression of PRDM10 mRNA	CTD	PMID:26251327
Prdm10	Rat	4,4'-sulfonyldiphenol	decreases methylation	ISO	RGD:1348926	6480464	bisphenol S results in decreased methylation of PRDM10 gene	CTD	PMID:31601247
Prdm10	Rat	4,4'-sulfonyldiphenol	affects methylation	ISO	RGD:1614773	6480464	bisphenol S affects the methylation of PRDM10 gene	CTD	PMID:31683443
Prdm10	Rat	4-hydroxyphenyl retinamide	increases expression	ISO	RGD:1614773	6480464	Fenretinide results in increased expression of PRDM10 mRNA	CTD	PMID:28973697
Prdm10	Rat	6-propyl-2-thiouracil	decreases expression	EXP		6480464	Propylthiouracil results in decreased expression of PRDM10 mRNA	CTD	PMID:30047161
Prdm10	Rat	acrolein	multiple interactions	ISO	RGD:1348926	6480464	[Acrolein co-treated with methacrylaldehyde co-treated with Ozone] results in increased expression of PRDM10 mRNA	CTD	PMID:32845096
Prdm10	Rat	aflatoxin B1	increases methylation	ISO	RGD:1348926	6480464	Aflatoxin B1 results in increased methylation of PRDM10 gene; Aflatoxin B1 results in increased methylation more ...	CTD	PMID:27153756\|PMID:30157460
Prdm10	Rat	amitrole	decreases expression	EXP		6480464	Amitrole results in decreased expression of PRDM10 mRNA	CTD	PMID:30047161
Prdm10	Rat	arsane	multiple interactions	ISO	RGD:1348926	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ...	CTD	PMID:39836092
Prdm10	Rat	arsenic atom	multiple interactions	ISO	RGD:1348926	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ...	CTD	PMID:39836092
Prdm10	Rat	benzo[a]pyrene	increases methylation	ISO	RGD:1614773	6480464	Benzo(a)pyrene results in increased methylation of PRDM10 exon; Benzo(a)pyrene results in increased methylation of PRDM10 more ...	CTD	PMID:27901495
Prdm10	Rat	benzo[a]pyrene	affects methylation	ISO	RGD:1348926	6480464	Benzo(a)pyrene affects the methylation of PRDM10 intron	CTD	PMID:30157460
Prdm10	Rat	beta-lapachone	increases expression	ISO	RGD:1348926	6480464	beta-lapachone results in increased expression of PRDM10 mRNA	CTD	PMID:38218311
Prdm10	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of PRDM10 mRNA	CTD	PMID:25181051
Prdm10	Rat	bisphenol A	increases methylation	ISO	RGD:1348926	6480464	bisphenol A results in increased methylation of PRDM10 gene	CTD	PMID:31601247
Prdm10	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of PRDM10 mRNA	CTD	PMID:30816183
Prdm10	Rat	bisphenol F	decreases expression	ISO	RGD:1614773	6480464	bisphenol F results in decreased expression of PRDM10 mRNA	CTD	PMID:38685157
Prdm10	Rat	butanal	decreases expression	ISO	RGD:1348926	6480464	butyraldehyde results in decreased expression of PRDM10 mRNA	CTD	PMID:26079696
Prdm10	Rat	cadmium atom	multiple interactions	ISO	RGD:1348926	6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of PRDM10 more ...	CTD	PMID:35301059
Prdm10	Rat	cadmium dichloride	multiple interactions	ISO	RGD:1348926	6480464	[Cadmium Chloride results in increased abundance of Cadmium] which results in decreased expression of PRDM10 more ...	CTD	PMID:35301059
Prdm10	Rat	CGP 52608	multiple interactions	ISO	RGD:1348926	6480464	CGP 52608 promotes the reaction [RORA protein binds to PRDM10 gene]	CTD	PMID:28238834
Prdm10	Rat	diazinon	increases methylation	ISO	RGD:1348926	6480464	Diazinon results in increased methylation of PRDM10 gene	CTD	PMID:22964155
Prdm10	Rat	Dibutyl phosphate	affects expression	ISO	RGD:1348926	6480464	di-n-butylphosphoric acid affects the expression of PRDM10 mRNA	CTD	PMID:37042841
Prdm10	Rat	dicrotophos	increases expression	ISO	RGD:1348926	6480464	dicrotophos results in increased expression of PRDM10 mRNA	CTD	PMID:28302478
Prdm10	Rat	folic acid	increases expression	ISO	RGD:1614773	6480464	Folic Acid results in increased expression of PRDM10 mRNA	CTD	PMID:25629700
Prdm10	Rat	FR900359	increases phosphorylation	ISO	RGD:1348926	6480464	FR900359 results in increased phosphorylation of PRDM10 protein	CTD	PMID:37730182
Prdm10	Rat	gallic acid	increases expression	ISO	RGD:1348926	6480464	Gallic Acid results in increased expression of PRDM10 mRNA	CTD	PMID:34408198
Prdm10	Rat	gentamycin	increases expression	EXP		6480464	Gentamicins results in increased expression of PRDM10 mRNA	CTD	PMID:33387578
Prdm10	Rat	manganese atom	multiple interactions	ISO	RGD:1348926	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ...	CTD	PMID:39836092
Prdm10	Rat	manganese(0)	multiple interactions	ISO	RGD:1348926	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ...	CTD	PMID:39836092
Prdm10	Rat	manganese(II) chloride	multiple interactions	ISO	RGD:1348926	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ...	CTD	PMID:39836092
Prdm10	Rat	methimazole	decreases expression	EXP		6480464	Methimazole results in decreased expression of PRDM10 mRNA	CTD	PMID:30047161
Prdm10	Rat	ozone	multiple interactions	ISO	RGD:1348926	6480464	[Acrolein co-treated with methacrylaldehyde co-treated with Ozone] results in increased expression of PRDM10 mRNA	CTD	PMID:32845096
Prdm10	Rat	paracetamol	decreases expression	ISO	RGD:1348926	6480464	Acetaminophen results in decreased expression of PRDM10 mRNA	CTD	PMID:21420995\|PMID:29067470
Prdm10	Rat	paracetamol	decreases expression	EXP		6480464	Acetaminophen results in decreased expression of PRDM10 mRNA	CTD	PMID:33387578
Prdm10	Rat	quercetin	increases expression	ISO	RGD:1348926	6480464	Quercetin results in increased expression of PRDM10 mRNA	CTD	PMID:21632981
Prdm10	Rat	sodium arsenite	multiple interactions	ISO	RGD:1348926	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ...	CTD	PMID:39836092
Prdm10	Rat	sunitinib	increases expression	ISO	RGD:1348926	6480464	Sunitinib results in increased expression of PRDM10 mRNA	CTD	PMID:31533062
Prdm10	Rat	testosterone	multiple interactions	EXP		6480464	[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of PRDM10 mRNA	CTD	PMID:32741896
Prdm10	Rat	trichostatin A	decreases expression	ISO	RGD:1348926	6480464	trichostatin A results in decreased expression of PRDM10 mRNA	CTD	PMID:24935251
Prdm10	Rat	triphenyl phosphate	increases expression	EXP		6480464	triphenyl phosphate results in increased expression of PRDM10 mRNA	CTD	PMID:30589522
Prdm10	Rat	triptonide	decreases expression	ISO	RGD:1614773	6480464	triptonide results in decreased expression of PRDM10 mRNA	CTD	PMID:33045310
Prdm10	Rat	valproic acid	increases methylation	ISO	RGD:1348926	6480464	Valproic Acid results in increased methylation of PRDM10 gene	CTD	PMID:29154799
Prdm10	Rat	valproic acid	decreases expression	ISO	RGD:1348926	6480464	Valproic Acid results in decreased expression of PRDM10 mRNA	CTD	PMID:28001369
Prdm10	Rat	valproic acid	affects expression	ISO	RGD:1348926	6480464	Valproic Acid affects the expression of PRDM10 mRNA	CTD	PMID:25979313
Prdm10	Rat	zinc atom	multiple interactions	ISO	RGD:1348926	6480464	[PCI 5002 co-treated with Zinc] results in increased expression of PRDM10 mRNA	CTD	PMID:18593933
Prdm10	Rat	zinc(0)	multiple interactions	ISO	RGD:1348926	6480464	[PCI 5002 co-treated with Zinc] results in increased expression of PRDM10 mRNA	CTD	PMID:18593933

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Prdm10	Rat	methylation	involved_in	IEA	UniProtKB-KW:KW-0489	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Prdm10	Rat	positive regulation of DNA-templated transcription	involved_in	ISO	RGD:1348926	1624291	PMID:36440963	RGD	PMID:36440963
Prdm10	Rat	positive regulation of DNA-templated transcription	involved_in	IEA	UniProtKB:Q9NQV6\|ensembl:ENSP00000354118	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Prdm10	Rat	positive regulation of transcription by RNA polymerase II	involved_in	ISO	RGD:1348926	1624291	PMID:31143550	RGD	PMID:31143550
Prdm10	Rat	positive regulation of transcription by RNA polymerase II	involved_in	IEA	UniProtKB:Q9NQV6\|ensembl:ENSP00000354118	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Prdm10	Rat	positive regulation of transcription by RNA polymerase II	involved_in	IBA	PANTHER:PTN002812522\|UniProtKB:Q9NQV6	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Prdm10	Rat	chromatin	located_in	IEA	UniProtKB:Q9NQV6\|ensembl:ENSP00000354118	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Prdm10	Rat	chromatin	is_active_in	ISO	RGD:1348926	1624291	PMID:36440963	RGD	PMID:36440963
Prdm10	Rat	chromatin	located_in	ISO	RGD:1348926	1624291	PMID:31143550	RGD	PMID:31143550
Prdm10	Rat	nucleus	is_active_in	IBA	FB:FBgn0032473\|FB:FBgn0259785\|FB:FBgn0287725\|MGI:104897\|MGI:107342\|MGI:107690\|MGI:2682313\|PANTHER:PTN002812519\|RGD:621069\|UniProtKB:Q13127\|UniProtKB:Q7Z3K3\|UniProtKB:Q8N8E2\|UniProtKB:Q96JM2\|UniProtKB:Q9H4Z2\|UniProtKB:Q9NQV6\|UniProtKB:Q9NTW7\|WB:WBGene00003002\|WB:WBGene00003218\|WB:WBGene00006342	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Prdm10	Rat	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Prdm10	Rat	nucleus	located_in	IEA	ARBA:ARBA00026330	1600115	GO_REF:0000117	UniProt	GO_REF:0000117
Prdm10	Rat	nucleus	is_active_in	ISO	RGD:1348926	1624291	PMID:36440963	RGD	PMID:36440963
Prdm10	Rat	nucleus	is_active_in	IEA	UniProtKB:Q9NQV6\|ensembl:ENSP00000354118	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Prdm10	Rat	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Prdm10	Rat	transcription repressor complex	part_of	ISO	RGD:1348926	1624291	PMID:31143550	RGD	PMID:31143550
Prdm10	Rat	transcription repressor complex	part_of	IEA	UniProtKB:Q9NQV6\|ensembl:ENSP00000354118	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Prdm10	Rat	DNA-binding transcription factor activity	enables	ISO	RGD:1348926	1624291	PMID:36440963	RGD	PMID:36440963
Prdm10	Rat	DNA-binding transcription factor activity	enables	IEA	UniProtKB:Q9NQV6\|ensembl:ENSP00000354118	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Prdm10	Rat	metal ion binding	enables	IEA	UniProtKB-KW:KW-0479	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Prdm10	Rat	methyltransferase activity	enables	IEA	UniProtKB-KW:KW-0489	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Prdm10	Rat	protein binding	enables	ISO	RGD:1348926	1624291	UniProtKB:Q04864 PMID:25416956	RGD	PMID:25416956
Prdm10	Rat	transferase activity	enables	IEA	UniProtKB-KW:KW-0808	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Prdm10	Rat	zinc ion binding	enables	IEA	UniProtKB-KW:KW-0863	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:31143550

Prdm10
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	37,982,210 - 38,085,907 (+)	NCBI		GRCr8
mRatBN7.2	8	29,724,011 - 29,827,757 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	29,724,245 - 29,826,080 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	8	32,419,921 - 32,526,357 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	32,452,885 - 32,526,351 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	32,445,116 - 32,551,157 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	31,067,787 - 31,137,510 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	8	31,182,995 - 31,286,272 (+)	NCBI		Celera
Cytogenetic Map	8	q13	NCBI

PRDM10
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	129,899,711 - 130,002,835 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	129,899,706 - 130,002,835 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	129,769,606 - 129,872,730 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	129,274,811 - 129,377,940 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	129,274,811 - 129,322,727	NCBI
Celera	11	126,937,763 - 127,040,883 (-)	NCBI		Celera
Cytogenetic Map	11	q24.3	NCBI
HuRef	11	125,721,900 - 125,824,816 (-)	NCBI		HuRef
CHM1_1	11	129,655,207 - 129,758,324 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	129,935,739 - 130,038,861 (-)	NCBI		T2T-CHM13v2.0

Prdm10
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	31,187,406 - 31,293,027 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	31,191,834 - 31,293,019 (+)	Ensembl		GRCm39 Ensembl
GRCm38	9	31,276,110 - 31,381,731 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	31,280,538 - 31,381,723 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	31,122,692 - 31,186,128 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	31,064,672 - 31,128,108 (+)	NCBI		MGSCv36	mm8
Celera	9	28,576,073 - 28,639,529 (+)	NCBI		Celera
Cytogenetic Map	9	A4	NCBI
cM Map	9	16.77	NCBI

Prdm10
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	30,852,969 - 30,917,510 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955412	30,855,909 - 30,929,998 (-)	NCBI	ChiLan1.0	ChiLan1.0

PRDM10
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	130,581,304 - 130,685,566 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	131,691,376 - 131,796,261 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	124,712,440 - 124,816,141 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	128,607,595 - 128,710,159 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	128,607,600 - 128,710,156 (-)	Ensembl	panpan1.1		panPan2

PRDM10
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	4,845,250 - 4,941,891 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	4,879,192 - 4,939,649 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	4,905,820 - 5,002,476 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	4,854,894 - 4,900,174 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	4,838,922 - 4,900,187 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	4,866,219 - 4,962,418 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	4,847,919 - 4,944,586 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	4,875,898 - 4,972,604 (+)	NCBI		UU_Cfam_GSD_1.0

Prdm10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	112,016,843 - 112,116,969 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936572	2,371,495 - 2,433,527 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936572	2,369,096 - 2,433,538 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PRDM10
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	56,657,270 - 56,749,482 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	56,657,270 - 56,749,487 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	62,881,051 - 62,960,599 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PRDM10
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	120,982,207 - 121,086,938 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	120,982,993 - 121,044,928 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666043	5,014,790 - 5,113,060 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Prdm10
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624812	4,287,749 - 4,390,020 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624812	4,283,179 - 4,389,520 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Prdm10
348 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	58
Count of miRNA genes:	26
Interacting mature miRNAs:	29
Transcripts:	ENSRNOT00000010423, ENSRNOT00000060621
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357398	Slep3	Serum leptin concentration QTL 3	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	9712463	41866876	Rat
2317030	Wbc5	White blood cell count QTL 5	3.21	0.005	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	8	8736635	53736635	Rat
1331804	Cm30	Cardiac mass QTL 30	3.77443		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	8	28242912	53961020	Rat
2317032	Ginf2	Gastrointestinal inflammation QTL 2	3.21	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	8	4705810	49705810	Rat
2301416	Bp315	Blood pressure QTL 315		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	7670578	52670578	Rat
2317036	Livw3	Liver weight QTL 3	2.43	0.01	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	8	4705810	49705810	Rat
12880023	Bw184	Body weight QTL 184		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	2097640	47097640	Rat
1354627	Despr14	Despair related QTL 14		0.0056	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	8	7688955	52688955	Rat
12880028	Cm103	Cardiac mass QTL 103		0.02	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	2097640	47097640	Rat
2317051	Aia18	Adjuvant induced arthritis QTL 18	2.42		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	8	8736635	53736635	Rat
2317048	Ginf1	Gastrointestinal inflammation QTL 1	3.52	0.005	cecum mucosa thickness (VT:0010234)	enterocolitis severity score (CMO:0002138)	8	4705810	49705810	Rat
12880025	Cm102	Cardiac mass QTL 102		0.044	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	8	2097640	47097640	Rat
1558646	Swd5	Spike wave discharge measurement QTL 5	3.45	0.00036	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	8	14906751	59906751	Rat
1300146	Rf17	Renal function QTL 17	2.9		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	8	28242912	73242912	Rat
8662823	Vetf5	Vascular elastic tissue fragility QTL 5	1.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	8	28242912	99525068	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	27205715	99103503	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	19331152	93965294	Rat
2302278	Gluco36	Glucose level QTL 36	4.2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	29502665	50095447	Rat
12880044	Am9	Aortic mass QTL 9		0.007	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	2097640	47097640	Rat
631648	Stl5	Serum triglyceride level QTL 5	4	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	27205715	54998217	Rat
724514	Uae15	Urinary albumin excretion QTL 15	2.9		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	29502665	70386295	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10378157	112202585	Rat
631842	Inf1	Infertility severity QTL 1	4.1	0.001	seminal gland mass (VT:0010524)	seminal vesicle wet weight (CMO:0001603)	8	22662330	67662330	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	8462195	110921472	Rat
631271	Lecl1	Lens clarity QTL 1		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	8	18984168	84531599	Rat
2303564	Gluco43	Glucose level QTL 43	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	26130187	71130187	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	27205715	99103503	Rat
1598824	Memor4	Memory QTL 4	2.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	8	9712220	53356647	Rat
1354595	Despr4	Despair related QTL 4	2.16	0.0036	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	8	7688955	52688955	Rat
2303572	Insul13	Insulin level QTL 13	2		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	8	26130187	71130187	Rat
724540	Uae8	Urinary albumin excretion QTL 8	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	8	28157323	30848259	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	27205715	99103503	Rat
1359021	Bp271	Blood pressure QTL 271	1.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	26644912	46711092	Rat
2302367	Slep5	Serum leptin concentration QTL 5	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	9712463	41866876	Rat
61373	Mcs4	Mammary carcinoma susceptibility QTL 4	1.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	8	16290444	61290444	Rat

D8Got39

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	29,751,676 - 29,751,880 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	32,449,811 - 32,450,014	NCBI	Rnor6.0
Rnor_5.0	8	32,474,611 - 32,474,814	UniSTS	Rnor5.0
RGSC_v3.4	8	31,064,589 - 31,064,793	RGD	RGSC3.4
RGSC_v3.4	8	31,064,590 - 31,064,793	UniSTS	RGSC3.4
RGSC_v3.1	8	31,073,356 - 31,073,559	RGD
Celera	8	31,212,863 - 31,213,064	UniSTS
RH 3.4 Map	8	244.2	UniSTS
RH 3.4 Map	8	244.2	RGD
RH 2.0 Map	8	176.7	RGD
Cytogenetic Map	8	q13	UniSTS

D8M9Mit188

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	29,803,357 - 29,803,788 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	32,501,960 - 32,502,390	NCBI	Rnor6.0
Rnor_5.0	8	32,526,760 - 32,527,190	UniSTS	Rnor5.0
RGSC_v3.4	8	31,116,263 - 31,116,693	UniSTS	RGSC3.4
Celera	8	31,264,532 - 31,264,963	UniSTS
Cytogenetic Map	8	q13	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001427772	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595992	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595994	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595995	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603594	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603595	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603596	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603597	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603598	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000010423 ⟹ ENSRNOP00000010423

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	29,724,245 - 29,826,080 (+)	Ensembl
Rnor_6.0 Ensembl	8	32,452,885 - 32,526,351 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094753 ⟹ ENSRNOP00000087282

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	29,724,245 - 29,826,080 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113679 ⟹ ENSRNOP00000078533

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	29,724,245 - 29,771,277 (+)	Ensembl

RefSeq Acc Id:

NM_001427772 ⟹ NP_001414701

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	37,982,403 - 38,085,907 (+)	NCBI

RefSeq Acc Id:

XM_017595995 ⟹ XP_017451484

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	37,982,210 - 38,085,907 (+)	NCBI
mRatBN7.2	8	29,724,011 - 29,827,757 (+)	NCBI
Rnor_6.0	8	32,419,924 - 32,526,357 (+)	NCBI

Sequence:

show sequence

GGCCAGAAGACTGGCCAAGAGAGTAAAAGGTGGACCAAAAAGGACTGGTAACCGAAATGGCTGGATTATATGGGGAAGGGCAAGAAGCCTCTAGGTTGGAGTTCAGGGGAGGGGGAGGGGTATGACAA
CCATACCACATACCAGGTATAACTGAGGGATGCAGGCAGAACCTGGCAGCCACTGTGTGCTTTGATATGTAAATGAGTGCCTCAGTTTGCCATTTGTCCCTGGGTTTGAGACCTAAGAGTACACACAT
GTACACATATGTACATGTACAAACACAAACAGGAATGAAGACATCTGTAGCAAAGACATTAGGGGAAAGAAATATACAGAAATAAAAATTGGCTTCATCATCTATCACAGTAACCTCATCCTGGTTAT
AAAAAAAAGACAACGGTTTTTAGAACATTTGTTTAAGTCCCAGCTAGATAGATGTAGTCCCATTTCTCCTGTTGAGTTTTCTTTCTTGTCATCTCTGATAACCTGACCTCTGGGACTCTTAATACATC
AGAGACGATATAATATTGTTAAATCTCAAAAGGATCTCTAGAGGCCATGGGTATAGGGCATGGCCGCCTTCCAAGGCCATCGAGGGCCTGTCTACCTCTGGCATTTCGGACTCCAATCACTGAGCGAT
CATTCCAGAGACTTCTCTGGCTACTACAAAACATTCCAGAAGCAAATGGCTTCTTGACAATAGACCCGGAGAGGAGAGAACAGCGCTGCACGTGACAAATGGGAGTCTAGCTCATCTGTCTCCCTTTC
ATGCTTTCTTTTCTACTGGGTTCAGCAGGGCCTTTATTCTATGTCTGGTGCTGCTCCCAAAGGGGTCTGTGGAAGAACAAATCATGGATTCTTCGTTAAGTCCTGCCTTCCTAGGCTGTCCTGTCTGA
GTTTTAAAAACTGGCCTCAGCTTTTCGCTGTTTTTAGTCATTTAAACAAAACTGCAACTGCAAGCGATCTGGTGGAACGGATTTTAGGTTTTCTCCCTGGATTTTTTTTCTCGAGCCTTTTGTTTCCT
GGTACTTCTTTTTTCTTGGCTAGCCAGTAGTTTTGTAGGGGATTTTGTTTGGAAACTGAATTTTGTTGTATACTGCTGGCTGGCCTGGAACTGTGTAGGCCACATTACCCTCAAACAATTCTGCCTTT
CCACTCAAGAACTGGGATTATGGGTTTGGATTATCTAGCTTTCTCTCTGTAGGCTTTATCACCTCTAACCTTTCTGTTTCTTAAAAGTTCCGGTCAGTGTTAGAAGAGAATTTTAACGGATGATCTCA
TTTAACCTTCAAAGCAACACAGTAAAGTACAGGTCTTGGGTAATGAAAATATTCCCTGCAGACACAAAGAGCGAAGGTCTCTGGCATTTGGTTGCCATTCCTGTTTTCAGTGGGGGAGTTCCCAGGTT
GTCTCATTTCAAAGCTGAGCTTGCTTTTACAAACCTGGCTAACACTGAGAAGGCAATCTTAAGGGACAGTACGACGTGGAGGTCCTAAATTAAGAAAGAAGAGTTCTGACATTTTTGCTCGTTCAGTA
TTGACTAACGTTCCCTCACCCGGCTTAAGTAGTTCAAGCTGGCCTTTAACTGCAGCTCCTATTGCCTCCACCTCCTGGGTGCACCACCACTCCAGGGTTATGTGGTGCTGGGGCTTGAGCACAGGACT
TAGTGTGGTAGGCGCTCTACTGAGACACATCCTCACCCCGATTGCTTCTGAAAAACTTTTCCAGAATGGTAAATGGTGGAAAAGAGAGATGTAGTGTAGGTGCTGTAAAGGGACTGCAAGGTCTGATG
ACCGATTCTCCTTGTGTCTGGAAGGCTGATAGGCCACTCCTGGCCCGCGGGGCGCAGTCTGTTTAACCGGTTTCGGTAGTCCCGGAAAGGCGTGTCCCAGTCGCGCTGAGGCCCCGGGCGCGCGCGTT
CTGTGCAAGTCCGCCCTGGAGCGGGAAGATCCACGGCCCACGCCTCCAGAGCTTCCGAGGACCCGAGTGTGGGGGGACAGGTGGACTAGGGATTCGGGTGTGCATTGGATCTTCCACACTGGATGCTC
AAGCATGCTGGACTGTGTCCCTCCACTTGCCCGCCAAGGTTCTTAGATGGGCCTTGACCCTGAATGCAAAGAGTGGGGCTTTCTGATTGGCTTAGAGTACAAACGCAGGCAAGCACCGCCAGAGACCC
GCTCTTCTATTGGGTTTTACATGAACTGCAGAGCACCAAATAAAGAGGCCTTCAGTCATTGGGCCATTGTGTGAATCTCCTTTTGGCTTCTCTGCAGACTGAATTAGCGTCCCAGGATTTTCGTCATG
ACTCTTAAATCTGGGCTTGTCAGTTCGGCCCAGCGTTCCTGGTCTCTAGGAACAGCATGGGACTTTCAGAGTTTAGCCAATCACATAACGTTGAGATCAGGTTGCCAGGCAGATTATGCTAATAAGGC
CCCGCCTTTTATGCTGCTCCCACTCTGCGGCGGGAAGAACCACCTGGAGGCGGCGGGGGGGTTTGATTTCCATCACCCCTAGGGAGAGAGGATCCGGGACCCGCTGATCTTCCAGCTCCCCTCACCCA
ACGTCGTGGGCGCTGTAGAGACCTTCCTGCCCTCCATGAGCACACGTGTACAGGACCTACAAGACAGATGAGTGCTCTCTGTCCTGAGCTACTGCTGTAGGTGGTTCAGACTTGGAGCTGTCCAACAA
GAAGATGGATCCCAAAGATGAAAGTTCTCATGTGTGGCCAACGTCTGCAGACCATGAACAGAACACTGCACAGGTGCACTTTGTTCCGGATGCCGGAACTGTGGCTCAGATTGTATACACTGACGACC
AAGTCCGTCCACCCCAGCAGGTGGTTTATACGGCAGATGGTGCCTCCTACACGTCAGTGGACGGTCCAGAGCACACACTGGTGTACATCCACCCAGTGGAAGCTGCACAGACTCTGTTTACAGATCCA
GCCCAGGTAGCTTATGTCCAACAGGATGCCACAGCTCAACAGGTGCTGCCTTCCATTGAGAGTGTGGATGGTTCAGACCCTCTGGCAACTCTGCAGAACCCAATTGCCAGACTAGATGCAAAAGAGGA
AGAGGAAGAAGAGGAGGATGAAGATGAGGATACAGAGGAAGAGGAGGAAGAGGATGCTGAAGACACGGATGTGGATGACTGGCAGCCTGACCCACCCAGGCCTTTTGATCCCCATGATTTGTGGTGTG
AGGAGTGTAACAATGCACATTCTTCTGTGTGCCCAAAGCATGGCCCCTTGCATCCAATCCCTAACCGGCCTGTGCTCACCCGGGCAAGAGCCAGTCTGCCTCTGGTCCTCTACATAGATAGGTTCCTT
GGGGGAGTGTTCTCCAAAAGACGGATTCCCAAGCGCACCCAGTTTGGCCCAGTGGAGGGGCCACTGGTCAGGGGATCAGAGCTGAAAGACTGCTACATCCATCTCAAGGTTTCTCTTGATAAAGGAGA
CAGAAAAGACAGGGATTTGCATGAAGACCTGTGGTTTGAGTTGTCTGATGAGACCCTTTGTAACTGGATGATGTTTGTGCGCCCAGCCCAGAACCACCTAGAACAGAACCTGGTAGCTTACCAATATG
GCCACCATGTGTATTATACAACAATAAAGAATGTGGAGCCCAAGCAGGAACTGAAGGTGTGGTATGCTGCATCCTATGCCGAGTTCGTGAATCAGAAAATCCACGACATATCTGAAGAAGAAAGGAAA
GTTCTTCGAGAGCAAGAGAAGAATTGGCCATGCTATGAGTGCAACCGGCGGTTTATCAGCTCAGAGCAACTACAACAGCACCTCAATTCTCACGATGAGAAGCTAGATGTGTTTACCAGAACAAGAGG
CAGAGGAAGGGGTCGAGGCAAGAGGAGATTTGGCCCTGGCCGGCGGCCTGGACGTCCTCCAAAATTTATCCGTTTGGAAATCACCAGTGAAAATGGGGAAAAGAGTGACGATGGAACACAGGACTTGC
TGCATTTCCCCGAAAAGGAGCAGTTTGATGAGGCTGAGCCAGCTGCTCTGAACGGACTAGATCAGCCAGAACAAGCGTCCATCCCAGTTCCTCAGCTGCCACAGGAAACCCCGACTTCTCTGGAGCAG
GAACCAGAAACTCACACCTTGCACCTGCAGCCACAGCAAGAAGAGAGCCTAGTGCCTACCCAGACCACTTTGACAGCCGATGACATGCGCAGAGCCAAACGCATCCGAGTGAAAAAGCATGTGCGAAG
CTTCCACTCGGAAAAGATCTACCAGTGTACAGAGTGTGACAAGGCCTTCTGTCGCCCTGACAAACTGAGACTGCACATGCTCCGGCATTCCGACCGCAAGGACTTCCTGTGTTCCACCTGCGGGAAGC
AGTTTAAGCGAAAAGACAAACTCCGGGAGCACATGCAAAGGATGCATAACCCTGAAAGGGAGGCCAAGAAAGCTGACCGCATCAGCCGTTCCAAGACCTTCAAGCCCCGAATCACATCCACAGACTAC
GACAGCTTCACGTTCAAGTGCCGCCTGTGCATGATGGGCTTCCGGAGGCGAGGCATGCTGGTGAATCACTTATCAAAGAGGCATCCAGACATGAAGATAGAAGAGGTGCCTGAGTTAACCCTCCCCAT
CATAAAACCCAATCGAGATTACTTCTGTCAGTATTGTGATAAGGTTTATAAGAGTGCCAGCAAGCGCAAAGCCCACATTCTGAAGAACCATCCAGGAGCGGAACTCCCACCAAGCATTCGGAAACTTC
GTCCTGCTGGCCCTGGAGAGCCTGACCCTATGCTGAGCACCCACACCCAGCTGACGGGTACCATTGCCACCCCTCCTGTCTGCTGCCCACACTGCTCCAAGCAGTATAGCAGCAAGACCAAGATGGTG
CAGCACATTCGAAAGAAGCACCCAGAGTATGCCCAGCTTCCCAACACCATCCACACGCCACTGACAACAGCTGTGATCAGCGCCACCCCAGCTGTCTTAACGACAGATAGTGCCACTGGAGAGACTGT
GGTGACAACAGACCTGCTAACTCAGGCGATGACGGAACTATCCCAGACCTTAACAACGGATTACCGAACACCTCAGGGGGACTACCAAAGGATTCAGTATATCCCTGTGTCTCAGTCAGCGTCTGGTC
TGCAGCAACCTCAGCACATACAGCTGCAAGTGGTGCAGGTGGCTCCGGCCACTTCCCCGCATCAGTCCCAGCAGTCCACAGTGGATGTTGGCCAGCTGCATGATCCTCAGACCTACACGCAGCATGCC
ATCCAGGTGCAGCACATCCAGGTCACAGAGCCCACCCCCACAGCTCCATCAGCATCCCAGGTAGCAGGGCAGCCATTGAGCCCCTCTGCTCAGCCGGTCCAGCAGGGGCTCAGCCCCTCCCATATCCA
AGGCAGTTCTTCCACTCAAGGGCAGGCTCTACAGCAGCAGCAGAATTCCTCTGTACAACACACATACCTCCCCAATGCTTGGAACTCCTTCCGTGGTTATTCGTCAGAAATTCAAATGATGACACTGC
CTCCAGGTCAGTTTGTGATCACAGACAGTGGTGTGGCAACCCCTGTTACATCTGGGCAAGTGAAAGCAGTGACTTCGGGTCATTATGTATTATCAGAAAGTCAACCAGAATTGGAGGAAAAGCAAGCC
TCTGCTCTCTCCGGAGCAGTCCAAGTTCAGCCGTCTGCACACAGTGACTCCCTGGACTCCACAAGCCCCAGCCAACAGCAGACCACCCAGTACATCATCACAACCACCACCAATGGGAATGGGGGCAG
CGAAGTGCACATCACCAAGCCGTAGCCTTCATCCCCTGGCTGGAGGCCAGAGTTCACGCCACAGTTTCTCATTTGGAATCTGAAGCTCCAAACACCTCAACCTCTTTTTAAAGACTTATTACTCTCTC
AAGAGTTTGGGAACTGCAGTTTTGACACACATAGACCAAGGGTGATTTCTGCCAAGGTCATCTTTACTCGATTGACTCGTCCCACCCTTGGGATTTCTGCTACGGAATGCAGTTCTTTCTGGGGAAAG
TTAACTTCCAGATGGAGAAACTTGCGCCTTGCTCTTGAGCTGGTTGTTTTGTTTTTGTTTTTGTTTCTGAACACACTGACAAGCCTTACTTCCCTTTGTGGACATACTCAGTGGCTAGTATTATGTTC
GTACCAAAGGGTGGAGACAAGTTGTACCAAGTCCATGGCCACTGGACATCTGAAACCCAAGCTATGGCGTCAAAAGAGAAGGAACATTTCTTTCCTGGGTGTGATTAGGTCAGGACCGCTGTCTCTCA
TGCAGTGGAGTTTTCAGTAATTTTAACAAAGGCAGCCTATTGGATGGAAAAATTAAAATAAGATAAAGATTTGAAGGTGGTCTTCTGAGCGAAAAACTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCGTCTCAGTCTCACTCTGCTACTCTGCTGCCCAGGATAGCCCTGAGCTCATGGGCTCATGGGATCCTCCTGCCTTAGTTTCCCAAGTAGCTGGGACTACGGTCAGCACTGT
CATGGCAGTTGTGTTTAAACTCTCTTGTTTCGGAAAACCTACTGGGCAGTAGCAGGACTCCCCACAGATGCTGACCCCAGGCAGACCTGGCCTCATATTCCACAAGCACAGACAGACTCCCTGGAAGA
CAAAAGGTTGCATGGTCTCAGCAGGATTTGAGCCCCTTTGTTAACGCTCTGCTTCCAGGCTTCTGGTTATATATAGCTGTGCTTAAGAAGAAGATATGTTCTACGAAAAATATGTAAATTGTATATAT
TTGTGTGTGTGTGTGTATACACACACACACACACACACACACACACACACACACATACTTATGGAGAGAGGGAGAGAGAGAGAACTGAGACCTTGTCCTGCCTCACAGGATGTGAAGGATGAGCTCCT
TACTCAGACACTCATAAACTCAGCTGCGTACGTATAGCACCTTTGTGTGTGATGCTAGGACTCAAACCCAGGGCCTCTGCATGCTGGGCAGGTTCCCCACCACTGAGCTACAACTCCGGCCCCACCTC
GCACTCTTGTTCACAGCATTGACTGTATTTTAGTACTTTCAGTGCTGTCTGAAAAGTGAAGATTCTTTAAGGTTGTGTAGAAAGGCGGCCTTTCTTTCTTCTAAGCATTTTAAACTTTAAGCCTATTG
CAACTCACCCAGACCTTGATATAAGATGACCTACTTCCCACTTAGGGCAAACATAAAATAAAGGGACCATTGTAGTAGGCTGAGGTAAAGGGATGGGTGTGCAGTTAGTTCTGAGAGGAACGCAGTCG
TCTGTGTGATAGTGGTCTTCTCTGTCTTCCTGTTTTCGAGTCTTGTTTGCTGTGAATCTAGTGGGGAAGTGCTGCCCCTCTTTTTACTCTGCATTCCACTTGTACCCATAAGACATCTTTAAAGCCTG
TATTTTAACAACTTTTGTGACATATATTTAAAAATAATTATTGTAGAGTGAATTTATCACTCCAGATCAGGGAGACCTAAGTTTGTTTCAAATGAAGTTAACTAATTTATTTTATTTACATTTCTAAG
GAAAAACTGGGTCTGTGATTTAAGAAATAGAGTAACTTCTGGGTGGTAAAGAGGCCTTCCTGAAAAGTAATCCTTTGGTTTGAAGTCACTTTATTTATTACGTAGATCCTACACTTTCCTCTTGGGAT
CTCATTCATAGACTATGTCTGAAGATTGGGGCCTGAAAAGAACCTGGGAAAATTACCTCAAAAAATGTGTGGAAACTGAAAATGGACTCTGTATCTTTGCCAACAAGAAAAGGTTAACAATAATTTCA
ACATGAAATGTTGACTCCGTCACAAAATGCAAGACTCTGGTCCCCAAATTCCTGTGGTGTAATGACTATAACTGTCTCGGGTTCTCCAAAAGTCATGTAGTGTTGTAACTGTCCCAGGGTCTCATCCA
GAGAGCCTTGGAAGGCGAAGAGCACGAGACCACCTCTAAGGTACAGTTTGAGGTTTTTGTGATTTAAATTTGCGCCGCTGCAGCAGGGTGTGGGAGTGAACACCTTTAATCCAGCACTTGGAAGGCTG
CTGCGGGCCTGCCTTTCAGTTGGAGGCCACTCCTACAAAGAGTTCAAGGACAGCCAGGGCTACACACTGAGAGCCCTTGATTTGAAAAGAAAACTACACAAGTAAATAAATAAATTTGACCCAATGGA
TTCTCTTTAATGAGAGCCAGCAGGGGTGTCTCCCCTCTTCTCAGGAATAACGCAGTGATTAAAACAAAGCCAATCACTGGAGGAATGTTGGTTTTATGCCAGTTATTTTTAACTTTTAAAATACGCAG
AGGAAAATACTGTTGAAGGACCTCTTCATCTCTTTCTCCTTTTTTGGGTCCTTATATGGAGTAAGTAAATTCCAGAACATAATACTATCACTGTTCTAAGATCAGGTATTTTATGAATTTATCCTGAG
GTGACAGAGGAGATGGCAGAGTATAATCCCTCTGACAACACACTGTGGGAAACATGTGGCCAATATTTCTATGGTGGTCTCTCCCTCCCAGTCACACGGACACTGTAGAGTGTGCTCGTTACAGTGGG
GATGTTTTGAAGTGGGATGGATGTAGAATTTTTTTTCTTTTTTACATTTTTATTGTTTAGTTTGTACCCAGAAAAAAATGGTTATTTCATCATGTAACATTCCTATTTTTCTGGAAAGATTTTCTGTT
TTGATGTTCTTGAATTATTTTCTGACCTGGAATTATCCTTTCAAAAAAGAATTCTTAAAATATCTAGAGCTAAAAAGAACCTAATGAGAAGCTGAAACTGGCCCATTGGTTGAAAGCAGTGATTCTAT
CTTGTTATTTAAATGTGAACATTTACTGTATATTCAGTGAGTTATAGTGTTAATAGTCTTGTGCTACCCAGCAGGTGTAAAAATTAATAAATATTTTTTTAATAA

hide sequence


Protein RefSeqs	NP_001414701	(Get FASTA)	NCBI Sequence Viewer
	XP_017451484	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL83311	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000010423.7
	ENSRNOP00000078533.1
	ENSRNOP00000087282
	ENSRNOP00000087282.1

RefSeq Acc Id:	XP_017451484 ⟸ XM_017595995
- Peptide Label:	isoform X1
- UniProtKB:	D3ZQ79 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDPKDESSHVWPTSADHEQNTAQVHFVPDAGTVAQIVYTDDQVRPPQQVVYTADGASYTSVDGPEHTLVYIHPVEAAQTLFTDPAQVAYVQQDATAQQVLPSIESVDGSDPLATLQNPIARLDAKEEE EEEEDEDEDTEEEEEEDAEDTDVDDWQPDPPRPFDPHDLWCEECNNAHSSVCPKHGPLHPIPNRPVLTRARASLPLVLYIDRFLGGVFSKRRIPKRTQFGPVEGPLVRGSELKDCYIHLKVSLDKGDR KDRDLHEDLWFELSDETLCNWMMFVRPAQNHLEQNLVAYQYGHHVYYTTIKNVEPKQELKVWYAASYAEFVNQKIHDISEEERKVLREQEKNWPCYECNRRFISSEQLQQHLNSHDEKLDVFTRTRGR GRGRGKRRFGPGRRPGRPPKFIRLEITSENGEKSDDGTQDLLHFPEKEQFDEAEPAALNGLDQPEQASIPVPQLPQETPTSLEQEPETHTLHLQPQQEESLVPTQTTLTADDMRRAKRIRVKKHVRSF HSEKIYQCTECDKAFCRPDKLRLHMLRHSDRKDFLCSTCGKQFKRKDKLREHMQRMHNPEREAKKADRISRSKTFKPRITSTDYDSFTFKCRLCMMGFRRRGMLVNHLSKRHPDMKIEEVPELTLPII KPNRDYFCQYCDKVYKSASKRKAHILKNHPGAELPPSIRKLRPAGPGEPDPMLSTHTQLTGTIATPPVCCPHCSKQYSSKTKMVQHIRKKHPEYAQLPNTIHTPLTTAVISATPAVLTTDSATGETVV TTDLLTQAMTELSQTLTTDYRTPQGDYQRIQYIPVSQSASGLQQPQHIQLQVVQVAPATSPHQSQQSTVDVGQLHDPQTYTQHAIQVQHIQVTEPTPTAPSASQVAGQPLSPSAQPVQQGLSPSHIQG SSSTQGQALQQQQNSSVQHTYLPNAWNSFRGYSSEIQMMTLPPGQFVITDSGVATPVTSGQVKAVTSGHYVLSESQPELEEKQASALSGAVQVQPSAHSDSLDSTSPSQQQTTQYIITTTTNGNGGSE VHITKP hide sequence

Ensembl Acc Id:

ENSRNOP00000010423 ⟸ ENSRNOT00000010423

Ensembl Acc Id:

ENSRNOP00000087282 ⟸ ENSRNOT00000094753

Ensembl Acc Id:

ENSRNOP00000078533 ⟸ ENSRNOT00000113679

RefSeq Acc Id:	NP_001414701 ⟸ NM_001427772
- UniProtKB:	D3ZQ79 (UniProtKB/TrEMBL)

Protein Domains

C2H2-type SET

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZQ79-F1-model_v2	AlphaFold	D3ZQ79	1-1146	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-31257	BioCyc
Ensembl Genes	ENSRNOG00000007853	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000010423.8	UniProtKB/TrEMBL
	ENSRNOT00000094753	ENTREZGENE
	ENSRNOT00000094753.1	UniProtKB/TrEMBL
	ENSRNOT00000113679.1	UniProtKB/TrEMBL
Gene3D-CATH	2.170.270.10	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	PRDM10_PR/SET	UniProtKB/TrEMBL
	SET_dom	UniProtKB/TrEMBL
	SET_dom_sf	UniProtKB/TrEMBL
	Zinc_finger	UniProtKB/TrEMBL
	Zinc_finger/UBP_domain	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
NCBI Gene	500964	ENTREZGENE
PANTHER	GASTRULA ZINC FINGER PROTEIN XLCGF49.1-LIKE-RELATED	UniProtKB/TrEMBL
	PR DOMAIN ZINC FINGER PROTEIN	UniProtKB/TrEMBL
	PR DOMAIN ZINC FINGER PROTEIN 10	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
Pfam	PRDM2_PR	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
	zf-met	UniProtKB/TrEMBL
PhenoGen	Prdm10	PhenoGen
PROSITE	SET	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000007853	RatGTEx
SMART	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
	SSF82199	UniProtKB/TrEMBL
UniProt	A0A8I5ZN18_RAT	UniProtKB/TrEMBL
	A0A8I6A7P1_RAT	UniProtKB/TrEMBL
	D3ZQ79	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-07-27	Prdm10	PR/SET domain 10	Prdm10	PR domain 10	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-02-03	Prdm10	PR domain 10	Prdm10	PR domain containing 10	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-02-28	Prdm10	PR domain containing 10	RGD1560384_predicted	similar to PR domain containing 10 isoform 2 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1560384_predicted	similar to PR domain containing 10 isoform 2 (predicted)	LOC500964	similar to PR domain containing 10 isoform 2	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC500964	similar to PR domain containing 10 isoform 2			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar

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