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Gene: Armh4 (armadillo-like helical domain containing 4) Rattus norvegicus

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Symbol:

Armh4

Name:

armadillo-like helical domain containing 4

RGD ID:

1310110

Description:

Predicted to enable TORC2 complex binding activity. Predicted to be involved in regulation of TORC2 signaling and regulation of inflammatory response. Predicted to be located in membrane. Orthologous to human ARMH4 (armadillo like helical domain containing 4); INTERACTS WITH 1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane; 3',5'-cyclic AMP; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

armadillo-like helical domain-containing protein 4; hypothetical protein LOC361032; LOC361032; RGD1310110; similar to 3632451O06Rik protein; uncharacterized protein C14orf37 homolog; uncharacterized protein LOC361032

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	25,455,478 - 25,556,569 (-)	NCBI		GRCr8
mRatBN7.2	15	22,975,895 - 23,076,986 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	22,975,895 - 23,076,949 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	25,753,156 - 25,854,222 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	26,714,490 - 26,815,560 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	24,961,684 - 25,062,756 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	26,586,359 - 26,687,412 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	26,587,179 - 26,678,420 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	30,512,209 - 30,613,262 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	25,680,073 - 25,781,128 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	25,696,592 - 25,796,832 (-)	NCBI
Celera	15	23,343,119 - 23,443,765 (-)	NCBI		Celera
Cytogenetic Map	15	p14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Armh4	Rat	1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane	multiple interactions	EXP		6480464	2 more ...	CTD	PMID:19414516
Armh4	Rat	17beta-estradiol	multiple interactions	ISO	ARMH4 (Homo sapiens)	6480464	[Estradiol co-treated with TGFB1 protein] results in increased expression of ARMH4 mRNA	CTD	PMID:30165855
Armh4	Rat	2,2',4,4'-Tetrabromodiphenyl ether	decreases expression	ISO	ARMH4 (Homo sapiens)	6480464	2 more ...	CTD	PMID:19095052
Armh4	Rat	2,4-dibromophenyl 2,4,5-tribromophenyl ether	affects expression	ISO	Armh4 (Mus musculus)	6480464	2 more ...	CTD	PMID:38648751
Armh4	Rat	3',5'-cyclic AMP	multiple interactions	EXP		6480464	2 more ...	CTD	PMID:19414516
Armh4	Rat	6-propyl-2-thiouracil	decreases expression	EXP		6480464	Propylthiouracil results in decreased expression of ARMH4 mRNA	CTD	PMID:24780913
Armh4	Rat	acrylamide	decreases expression	EXP		6480464	Acrylamide results in decreased expression of ARMH4 mRNA	CTD	PMID:28959563
Armh4	Rat	aristolochic acid A	decreases expression	ISO	ARMH4 (Homo sapiens)	6480464	aristolochic acid I results in decreased expression of ARMH4 mRNA	CTD	PMID:33212167
Armh4	Rat	benzo[a]pyrene	affects methylation	ISO	ARMH4 (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of ARMH4 5' UTR	CTD	PMID:27901495
Armh4	Rat	benzo[a]pyrene	increases methylation	ISO	ARMH4 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of ARMH4 promoter	CTD	PMID:27901495
Armh4	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of ARMH4 mRNA	CTD	PMID:25181051
Armh4	Rat	bisphenol A	decreases methylation	ISO	ARMH4 (Homo sapiens)	6480464	bisphenol A results in decreased methylation of ARMH4 gene	CTD	PMID:31601247
Armh4	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of ARMH4 mRNA	CTD	PMID:30816183 more ...
Armh4	Rat	bisphenol F	multiple interactions	ISO	ARMH4 (Homo sapiens)	6480464	[bisphenol F co-treated with Fulvestrant] results in decreased methylation of ARMH4 gene	CTD	PMID:31601247
Armh4	Rat	butanal	increases expression	ISO	ARMH4 (Homo sapiens)	6480464	butyraldehyde results in increased expression of ARMH4 mRNA	CTD	PMID:26079696
Armh4	Rat	cadmium dichloride	increases expression	EXP		6480464	Cadmium Chloride results in increased expression of ARMH4 mRNA	CTD	PMID:33453195
Armh4	Rat	copper atom	increases expression	EXP		6480464	Copper results in increased expression of ARMH4 mRNA	CTD	PMID:30556269
Armh4	Rat	copper(0)	increases expression	EXP		6480464	Copper results in increased expression of ARMH4 mRNA	CTD	PMID:30556269
Armh4	Rat	diquat	decreases expression	ISO	Armh4 (Mus musculus)	6480464	Diquat results in decreased expression of ARMH4 mRNA	CTD	PMID:36851058
Armh4	Rat	dorsomorphin	multiple interactions	ISO	ARMH4 (Homo sapiens)	6480464	[NOG protein co-treated with p-Chloromercuribenzoic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 more ...	CTD	PMID:27188386
Armh4	Rat	doxorubicin	decreases expression	ISO	ARMH4 (Homo sapiens)	6480464	Doxorubicin results in decreased expression of ARMH4 mRNA	CTD	PMID:29803840
Armh4	Rat	endosulfan	decreases expression	EXP		6480464	Endosulfan results in decreased expression of ARMH4 mRNA	CTD	PMID:29391264
Armh4	Rat	entinostat	decreases expression	ISO	ARMH4 (Homo sapiens)	6480464	entinostat results in decreased expression of ARMH4 mRNA	CTD	PMID:27188386
Armh4	Rat	epoxiconazole	increases expression	ISO	Armh4 (Mus musculus)	6480464	epoxiconazole results in increased expression of ARMH4 mRNA	CTD	PMID:35436446
Armh4	Rat	fenvalerate	increases expression	EXP		6480464	fenvalerate results in increased expression of ARMH4 mRNA	CTD	PMID:30307764
Armh4	Rat	fulvestrant	increases methylation	ISO	ARMH4 (Homo sapiens)	6480464	Fulvestrant results in increased methylation of ARMH4 gene	CTD	PMID:31601247
Armh4	Rat	fulvestrant	multiple interactions	ISO	ARMH4 (Homo sapiens)	6480464	[bisphenol F co-treated with Fulvestrant] results in decreased methylation of ARMH4 gene	CTD	PMID:31601247
Armh4	Rat	genistein	decreases expression	ISO	Armh4 (Mus musculus)	6480464	Genistein results in decreased expression of ARMH4 mRNA	CTD	PMID:32186404
Armh4	Rat	gentamycin	decreases expression	EXP		6480464	Gentamicins results in decreased expression of ARMH4 mRNA	CTD	PMID:33387578
Armh4	Rat	lipopolysaccharide	multiple interactions	ISO	ARMH4 (Homo sapiens)	6480464	[S-(1 and 2-dichlorovinyl)cysteine co-treated with Lipopolysaccharides] results in increased expression of ARMH4 mRNA	CTD	PMID:35811015
Armh4	Rat	methoxychlor	affects methylation	EXP		6480464	Methoxychlor affects the methylation of ARMH4 gene	CTD	PMID:35440735
Armh4	Rat	methylmercury chloride	decreases expression	ISO	ARMH4 (Homo sapiens)	6480464	methylmercuric chloride results in decreased expression of ARMH4 mRNA	CTD	PMID:28001369
Armh4	Rat	p-chloromercuribenzoic acid	decreases expression	ISO	ARMH4 (Homo sapiens)	6480464	p-Chloromercuribenzoic Acid results in decreased expression of ARMH4 mRNA	CTD	PMID:26272509
Armh4	Rat	p-chloromercuribenzoic acid	multiple interactions	ISO	ARMH4 (Homo sapiens)	6480464	[NOG protein co-treated with p-Chloromercuribenzoic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of ARMH4 mRNA	CTD	PMID:27188386
Armh4	Rat	panobinostat	multiple interactions	ISO	ARMH4 (Homo sapiens)	6480464	[NOG protein co-treated with Panobinostat co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of ARMH4 mRNA	CTD	PMID:27188386
Armh4	Rat	panobinostat	decreases expression	ISO	ARMH4 (Homo sapiens)	6480464	panobinostat results in decreased expression of ARMH4 mRNA	CTD	PMID:26272509
Armh4	Rat	paracetamol	increases expression	EXP		6480464	Acetaminophen results in increased expression of ARMH4 mRNA	CTD	PMID:33387578
Armh4	Rat	paraquat	decreases expression	EXP		6480464	Paraquat results in decreased expression of ARMH4 mRNA	CTD	PMID:32680482
Armh4	Rat	phenylmercury acetate	decreases expression	ISO	ARMH4 (Homo sapiens)	6480464	Phenylmercuric Acetate results in decreased expression of ARMH4 mRNA	CTD	PMID:26272509
Armh4	Rat	phenylmercury acetate	multiple interactions	ISO	ARMH4 (Homo sapiens)	6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of ARMH4 mRNA	CTD	PMID:27188386
Armh4	Rat	propanal	increases expression	ISO	ARMH4 (Homo sapiens)	6480464	propionaldehyde results in increased expression of ARMH4 mRNA	CTD	PMID:26079696
Armh4	Rat	S-(1,2-dichlorovinyl)-L-cysteine	multiple interactions	ISO	ARMH4 (Homo sapiens)	6480464	[S-(1 and 2-dichlorovinyl)cysteine co-treated with Lipopolysaccharides] results in increased expression of ARMH4 mRNA	CTD	PMID:35811015
Armh4	Rat	SB 431542	multiple interactions	ISO	ARMH4 (Homo sapiens)	6480464	[NOG protein co-treated with p-Chloromercuribenzoic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 more ...	CTD	PMID:27188386
Armh4	Rat	sodium arsenite	increases expression	ISO	ARMH4 (Homo sapiens)	6480464	sodium arsenite results in increased expression of ARMH4 mRNA	CTD	PMID:29301061
Armh4	Rat	sunitinib	decreases expression	ISO	ARMH4 (Homo sapiens)	6480464	Sunitinib results in decreased expression of ARMH4 mRNA	CTD	PMID:31533062
Armh4	Rat	temozolomide	decreases expression	ISO	ARMH4 (Homo sapiens)	6480464	Temozolomide results in decreased expression of ARMH4 mRNA	CTD	PMID:31758290
Armh4	Rat	trichostatin A	decreases expression	ISO	ARMH4 (Homo sapiens)	6480464	trichostatin A results in decreased expression of ARMH4 mRNA	CTD	PMID:24935251 and PMID:26272509
Armh4	Rat	trichostatin A	multiple interactions	ISO	ARMH4 (Homo sapiens)	6480464	[NOG protein co-treated with trichostatin A co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased expression of ARMH4 mRNA	CTD	PMID:27188386
Armh4	Rat	urethane	increases expression	ISO	ARMH4 (Homo sapiens)	6480464	Urethane results in increased expression of ARMH4 mRNA	CTD	PMID:28818685
Armh4	Rat	valproic acid	increases expression	ISO	ARMH4 (Homo sapiens)	6480464	Valproic Acid results in increased expression of ARMH4 mRNA	CTD	PMID:29154799
Armh4	Rat	valproic acid	decreases expression	ISO	ARMH4 (Homo sapiens)	6480464	Valproic Acid results in decreased expression of ARMH4 mRNA	CTD	PMID:24935251
Armh4	Rat	valproic acid	decreases methylation	ISO	ARMH4 (Homo sapiens)	6480464	Valproic Acid results in decreased methylation of ARMH4 gene	CTD	PMID:29154799
Armh4	Rat	vorinostat	decreases expression	ISO	ARMH4 (Homo sapiens)	6480464	vorinostat results in decreased expression of ARMH4 mRNA	CTD	PMID:27188386

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Armh4	Rat	regulation of inflammatory response	involved_in	ISO	ARMH4 (Homo sapiens)	1624291	PMID:36649229	RGD	PMID:36649229
Armh4	Rat	regulation of TORC2 signaling	involved_in	ISO	Armh4 (Mus musculus)	1624291	PMID:25418727	RGD	PMID:25418727

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Armh4	Rat	membrane	located_in	ISO	ARMH4 (Homo sapiens)	1624291	PMID:36649229	RGD	PMID:36649229
Armh4	Rat	membrane	located_in	IEA	UniProtKB-KW:KW-0472	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Armh4	Rat	protein binding	enables	ISO	ARMH4 (Homo sapiens)	1624291	UniProtKB:A8MWY0 and PMID:33961781	RGD	PMID:33961781
Armh4	Rat	protein binding	enables	ISO	Armh4 (Mus musculus)	1624291	UniProtKB:Q6QI06 and PMID:25418727	RGD	PMID:25418727
Armh4	Rat	TORC2 complex binding	enables	ISO	Armh4 (Mus musculus)	1624291	PMID:25418727	RGD	PMID:25418727

#	Reference Title	Reference Citation
1.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Armh4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	15	25,455,478 - 25,556,569 (-)	NCBI		GRCr8
mRatBN7.2	15	22,975,895 - 23,076,986 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	15	22,975,895 - 23,076,949 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	15	25,753,156 - 25,854,222 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	15	26,714,490 - 26,815,560 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	15	24,961,684 - 25,062,756 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	15	26,586,359 - 26,687,412 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	15	26,587,179 - 26,678,420 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	15	30,512,209 - 30,613,262 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	15	25,680,073 - 25,781,128 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	15	25,696,592 - 25,796,832 (-)	NCBI
Celera	15	23,343,119 - 23,443,765 (-)	NCBI		Celera
Cytogenetic Map	15	p14	NCBI

ARMH4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	58,000,761 - 58,152,213 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	57,999,735 - 58,298,139 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	58,467,479 - 58,618,931 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	57,540,561 - 57,688,600 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	57,540,560 - 57,688,600	NCBI
Celera	14	38,520,760 - 38,668,792 (-)	NCBI		Celera
Cytogenetic Map	14	q23.1	NCBI
HuRef	14	38,636,789 - 38,784,667 (-)	NCBI		HuRef
CHM1_1	14	58,409,339 - 58,557,390 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	52,207,688 - 52,359,170 (-)	NCBI		T2T-CHM13v2.0

Armh4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	14	49,919,017 - 50,020,843 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	14	49,913,409 - 50,020,840 (-)	Ensembl		GRCm39 Ensembl
GRCm38	14	49,681,560 - 49,783,480 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	14	49,675,952 - 49,783,383 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	14	50,301,694 - 50,403,042 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	14	48,603,511 - 48,705,279 (-)	NCBI		MGSCv36	mm8
Celera	14	45,883,049 - 46,001,900 (-)	NCBI		Celera
Cytogenetic Map	14	C1	NCBI
cM Map	14	25.78	NCBI

Armh4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955466	11,777,693 - 11,880,257 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955466	11,771,258 - 11,889,444 (-)	NCBI	ChiLan1.0	ChiLan1.0

ARMH4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	59,120,298 - 59,276,345 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	58,336,812 - 58,492,972 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	38,600,338 - 38,746,397 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	56,870,406 - 57,003,380 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	56,870,406 - 57,003,380 (-)	Ensembl	panpan1.1		panPan2

ARMH4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	33,411,953 - 33,575,083 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	33,412,665 - 33,551,054 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	33,174,352 - 33,336,785 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	33,651,725 - 33,816,624 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	33,651,740 - 33,782,102 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	33,267,316 - 33,429,880 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	33,332,566 - 33,497,069 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	33,707,637 - 33,872,149 (-)	NCBI		UU_Cfam_GSD_1.0

Armh4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	71,623,762 - 71,738,159 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936495	2,456,147 - 2,558,354 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936495	2,452,971 - 2,567,862 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARMH4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	187,103,809 - 187,259,015 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	187,118,498 - 187,259,069 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	208,103,943 - 208,170,315 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ARMH4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	35,195,374 - 35,344,585 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	35,196,061 - 35,344,708 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	23,428,549 - 23,584,010 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Armh4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624884	3,034,414 - 3,223,161 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624884	3,027,799 - 3,225,859 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Armh4
637 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	119
Count of miRNA genes:	89
Interacting mature miRNAs:	109
Transcripts:	ENSRNOT00000041420
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331729	Rf42	Renal function QTL 42	3.071		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	15	17362897	73690657	Rat
1641887	Alcrsp14	Alcohol response QTL 14			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	15	1	42356671	Rat
10755503	Bp391	Blood pressure QTL 391	2.37		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	15	20248600	37896129	Rat
1578646	Bmd18	Bone mineral density QTL 18	5.2		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	15	22806240	98288169	Rat
9589149	Insul29	Insulin level QTL 29	9.06	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	15	1	34723002	Rat
1578647	Bmd17	Bone mineral density QTL 17	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	15	22806240	98288169	Rat
10401805	Kidm51	Kidney mass QTL 51			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	15	306329	45306329	Rat
2317750	Glom26	Glomerulus QTL 26	4.3		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	15	12496141	65205939	Rat
2298549	Neuinf12	Neuroinflammation QTL 12	3.5		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	15	1	55302115	Rat
8552920	Pigfal8	Plasma insulin-like growth factor 1 level QTL 8	3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	15	1	34723002	Rat
2293688	Bss29	Bone structure and strength QTL 29	5.31	0.0001	femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	15	11111142	56111142	Rat
5685002	Bss103	Bone structure and strength QTL 103	2.8		tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	15	14481165	28469888	Rat
8694361	Abfw6	Abdominal fat weight QTL 6	10.2	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	15	1	34723002	Rat
631273	Lecl2	Lens clarity QTL 2		0.001	lens clarity trait (VT:0001304)	age of onset/diagnosis of cataract (CMO:0001584)	15	10596089	55596089	Rat
2300167	Bmd63	Bone mineral density QTL 63	5.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	15	11111142	56111142	Rat
731170	Pur3	Proteinuria QTL 3	2.3	0.0005	urine protein amount (VT:0005160)	urine protein excretion rate (CMO:0000759)	15	1	41686771	Rat
738017	Hcas7	Hepatocarcinoma susceptibility QTL 7	2.91		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	15	2266368	46921453	Rat
10054130	Srcrt8	Stress Responsive Cort QTL 8	2.18	0.0085	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	15	22117933	67117933	Rat
2300173	Bmd62	Bone mineral density QTL 62	12.8	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	15	11111142	56111142	Rat
2324620	Coatc3	Coat color QTL 3			coat/hair pigmentation trait (VT:0010463)	pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)	15	19856566	46187442	Rat
61424	Scl1	Serum cholesterol level QTL 1	7.7	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	15	16725528	80672115	Rat
1582251	Gluco24	Glucose level QTL 24	3.2	0.0008	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	15	5530756	50530756	Rat
1354657	Despr13	Despair related QTL 13		0.0022	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	15	1	29912054	Rat
631550	Bw7	Body weight QTL 7	3.6		body mass (VT:0001259)	body weight (CMO:0000012)	15	19856566	34924750	Rat
1578660	Bss19	Bone structure and strength QTL 19	4.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	15	22806240	98288169	Rat

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	46	113	85	84	53	25	53	6	209	94	93	45	60	31


RefSeq Transcripts	NM_001108374	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039093475	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474040	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212344	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000041420 ⟹ ENSRNOP00000051182

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	22,975,895 - 23,076,949 (-)	Ensembl
Rnor_6.0 Ensembl	15	26,587,179 - 26,678,420 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106281 ⟹ ENSRNOP00000089792

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	15	22,975,895 - 23,075,820 (-)	Ensembl

RefSeq Acc Id:

NM_001108374 ⟹ NP_001101844

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	25,455,478 - 25,556,532 (-)	NCBI
mRatBN7.2	15	22,975,895 - 23,076,949 (-)	NCBI
Rnor_6.0	15	26,586,359 - 26,687,412 (-)	NCBI
Rnor_5.0	15	30,512,209 - 30,613,262 (-)	NCBI
RGSC_v3.4	15	25,680,073 - 25,781,128 (-)	RGD
Celera	15	23,343,119 - 23,443,765 (-)	RGD

Sequence:

show sequence

ACAGCCAAGGGAGTGTAGGCGGCCTCTACGTGAGTCGTGGCAGGGATGGCTGGCACTGGCGCTGCCACTTTCCTTCGCGCTCAGCTGTGCTGAATGCTCCAGGACTCAGTTACTGGAATTGTCGACTC
CTTCAATCGATTTTCTCCTCCCACTATGAGCAGACCAACTCTGCTGCCCTCCTGTGTGGCTTTCTGCAGCATTCTCTTCCTCACCTTGGCCACAGGATGTCGAGCTTTCCCACAGGTGGAAAGGAGGG
AAACATCACACGCTTATGCAGAGAAGGAGCAGCCCCAGAAGATGAACACAGATGACCAAGAAAACATCTCCTTTGCTCCAAAGTACACACCCCAGCAGATGTCCTCTGATGCTCCCATGGGACTCTCT
GCAGGACCGTCAGTGACACCATTACATAAAGTATTCTCTGTGAGCAGAGAGAGTCACCTTGCAGGAGCTGGGCTACTGTATGCTACCAGCACTGGTGTTTACTCTTCTGGTGAGCCAGTGGTTTCAAC
CAGTGACCAAGAGCATAGCCCCAGCCAGCTTGAAAGAATGTCTCCTGAGCACAGCCTTTCCAAGTCCGTATTAACTGTTGCTTCTTCTTCACCTGCTTCTCTGAATCCTGAACAGGAGGAACCCTACA
GCAGTTCAAGCACCCAGTCCATGGTACAAGGGATCACAGATGGAGCCCATGGTTTCCTGGAGTATTTAGATAACCAGGTGTTTGCAACTGAAAGTCAGGAAGCAGTTAGCTTAGGAAAGTCACCTCCT
TCTTCTATAAATACCAAAGAAACTGAGAACATCAAAGCAGATGCAGCCATGAGAACTACTGCCTTTCCTCATGTTGATTCCACAAGAGAGATGAAGCCTGATAGGGAGAGACCCTCAGAGATGGCAGT
TGACAATGTCGAGAGCAATACCACTAAGTATTTGGTGACACTCCCCAAGAATGTCCTGACTATTGAGCCAACAGCTGACAGTGTTTTGGGAAACCCTAAGGTCACAGTGAGTGTCGGTACACCTGACC
CAGTTTCTTCTGTCTTCAGCGAGGAGTGGGATGACACCAAATTTGAAAGCATAAATCGAGGGAGGCCCCCAGAGTCAGGAGACAATGCAGAGACTCAAGTGAGAACAGAGCAACCGCATGGAAACTCT
GAGAGCTTTGAGGGGACTGAGGAGAGCCCCACTTCCACAGAGGTTGCAAAGGTGGCTCCAGGGCTCCCGGGAGGAGAAACACCCTTGGGAACAACCCTGGTAACTGCACTGGGGGATGAGAGATCAAC
AGTCCTGACCCATCAGATTTCCTTCACTCCCACGAGTCCTGTAGAAGACCCTGAAGTTTCTACTATGAAGCTGTTCTCAAGTGCAGGAGGTTTCACAGCATCCACCCAGGGGGACAGGACCCAGCTCT
CCTCAGAGACTGCAGTTTCTCTGTCTCAATATGAGTCTGTGCCACAGCAGGCCGCAGGAAATGTGCTAAAAGAGATGACAATGGCCACTCAAGAAATAGACTCCACGTTACCGGTGGTGACACAAGAG
CATATGACCACCGTCGAGGTTCCCAGAGGCAGTGGGGAGCCTGAAGAGGCCATGCCATCCCTCTCCTCTGTGTCTGCTGAAGTGGATGATGCTGAGCTCTCCAGACGATGGGAGTCTCTGGCCACTCC
AGCCTCCACCACTGTTGTCCCTCTGTCTCTCCAACTTACCTCATCCATGGAAGATCTCATGGACACAATCACTGGGCCAAATGAAGAATTCATACCAGTTTTGGGCTCCCCAATGACACCCCCTGCAG
TGACTGTGGAAGCTCCCACAATTTCTCCAGCACTCCCTTCCGAGGGAAGAACGAGTCCATCCCTCAGCCGCCCAAATACAGCTGCCTCCTATGGCCTGGAACAACTCGAATCTGAAGAGGTAGAAGAT
GATGAGGATGAAGAAGATGAAGACGAAGAGGAAGAAGAGGATGATGAGGAAGATGAAGAGGACGAGGAAGATAAAGAGGCAGACTCCTTGTATAAGGACTTCAATAGTGATACCGAGCCACCAGGGTA
TACTCTGCCTGGCATCACGTCCCAGGAACCTGACATAGGACCAGGAAGCATAGACCTACTAGAGGTAGCCACCTACCAGGTGCCAGAGACCATCGAGTGGGAACAACAGAATCAAGGTCTGGTGAGAA
GCTGGATGGAAAAGCTAAAAGACAAGGCAGGCTACATGTCTGGAATGCTGGTGCCTGTTGGGGTAGGGATAGCCGGAGCCTTGTTCATCTTGGGAGCGCTGTACAGCATTAAGGTTATGAATCGCCGA
AGAAGGAATGGCTTCAAAAGGCATAAAAGGAAGCAGAGAGAATTCAACAGTATGCAAGACAGAGTGATGCTGTTAGCTGATAGTTCTGAAGACGAATTCTGAGCTGGACTTGAGTTCAACCGAGACAT
CCCATGGGATTATTATCTTATTTTCTATGTGAAGACAAACAGAAGAAAGAGAATAAATAAATGAGAAAGAACAGTATCTATCCACCTTGCTGCTACCAGGCCTCTGGTCCAGCTCCCGTCTCTGCTGG
AGAGTAGTTTTTTTTTTCTTGTGCTCAGCAGAAAAACCACGCTGTACCCTCAATGCAGCATGCAGTGTTCGGCTCATCTGTAGTGTATATGTCATCCACAAGGGCTGGGATTTAGAAACACACAGGCT
ACGTGTTCAGGGGGAGTTAGGTAGAATAAATATTTCGTATTTTTCCATTGCCTTTTTCTTGGTTTGGATTACTGGACTGAAGTTAATGATGTCACCACCAAGGCATCGTTGACTTTGATTGACGAATT
CTAAGGAAGGGTAACTTTTCACAATCCTTCCCTACCTTTTTGAAGCTGTCGGCCTTGGTGTACCCTCTCTCTGCATCAAAGACTAGTTACCACACTTGGAATGATTTTTTTCCCTGAGATATCTCAGC
CTATTAGAATTATATGCAAGTCTGTGTGTATCTTGCATTAAATTTTCCAGTCTCTTAGGTGTTTTTTTTTAATTTTTCTCTTTCTTAGTCTTGCTGTTAGTAAGAAAAGAATGTACCAGAAATTATAC
ATTACATAAACCCTTAGCCTCAATTTATGCTTGCTTTCTTGAATAGTGTGACTTAGTTCGATGCATATACTGAAATATTCTTATTTGTTAATCATTACAGGATAGTCTTTTGGTATATTACTGAAATT
AGCTAAGAAGAAATAAGGATGAAATC

hide sequence

RefSeq Acc Id:

XM_039093475 ⟹ XP_038949403

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	15	25,455,609 - 25,556,569 (-)	NCBI
mRatBN7.2	15	22,976,026 - 23,076,986 (-)	NCBI


Protein RefSeqs	NP_001101844	(Get FASTA)	NCBI Sequence Viewer
	XP_038949403	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL88394	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000051182
	ENSRNOP00000051182.5
	ENSRNOP00000089792
	ENSRNOP00000089792.1

RefSeq Acc Id:

NP_001101844 ⟸ NM_001108374

- UniProtKB:

D3ZYI3 (UniProtKB/TrEMBL), A6KE89 (UniProtKB/TrEMBL), A0A8I6GIE0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLQDSVTGIVDSFNRFSPPTMSRPTLLPSCVAFCSILFLTLATGCRAFPQVERRETSHAYAEKEQPQKMNTDDQENISFAPKYTPQQMSSDAPMGLSAGPSVTPLHKVFSVSRESHLAGAGLLYATST
GVYSSGEPVVSTSDQEHSPSQLERMSPEHSLSKSVLTVASSSPASLNPEQEEPYSSSSTQSMVQGITDGAHGFLEYLDNQVFATESQEAVSLGKSPPSSINTKETENIKADAAMRTTAFPHVDSTREM
KPDRERPSEMAVDNVESNTTKYLVTLPKNVLTIEPTADSVLGNPKVTVSVGTPDPVSSVFSEEWDDTKFESINRGRPPESGDNAETQVRTEQPHGNSESFEGTEESPTSTEVAKVAPGLPGGETPLGT
TLVTALGDERSTVLTHQISFTPTSPVEDPEVSTMKLFSSAGGFTASTQGDRTQLSSETAVSLSQYESVPQQAAGNVLKEMTMATQEIDSTLPVVTQEHMTTVEVPRGSGEPEEAMPSLSSVSAEVDDA
ELSRRWESLATPASTTVVPLSLQLTSSMEDLMDTITGPNEEFIPVLGSPMTPPAVTVEAPTISPALPSEGRTSPSLSRPNTAASYGLEQLESEEVEDDEDEEDEDEEEEEDDEEDEEDEEDKEADSLY
KDFNSDTEPPGYTLPGITSQEPDIGPGSIDLLEVATYQVPETIEWEQQNQGLVRSWMEKLKDKAGYMSGMLVPVGVGIAGALFILGALYSIKVMNRRRRNGFKRHKRKQREFNSMQDRVMLLADSSED
EF

hide sequence

Ensembl Acc Id:

ENSRNOP00000051182 ⟸ ENSRNOT00000041420

RefSeq Acc Id:	XP_038949403 ⟸ XM_039093475
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6GIE0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000089792 ⟸ ENSRNOT00000106281

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZYI3-F1-model_v2	AlphaFold	D3ZYI3	1-768	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-14100	BioCyc
Ensembl Genes	ENSRNOG00000031849	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000041420	ENTREZGENE
	ENSRNOT00000041420.6	UniProtKB/TrEMBL
	ENSRNOT00000106281	ENTREZGENE
	ENSRNOT00000106281.1	UniProtKB/TrEMBL
InterPro	DUF4696	UniProtKB/TrEMBL
KEGG Report	rno:361032	UniProtKB/TrEMBL
NCBI Gene	361032	ENTREZGENE
PANTHER	ARMADILLO-LIKE HELICAL DOMAIN-CONTAINING PROTEIN 4	UniProtKB/TrEMBL
	PTHR21585	UniProtKB/TrEMBL
Pfam	DUF4696	UniProtKB/TrEMBL
PhenoGen	Armh4	PhenoGen
RatGTEx	ENSRNOG00000031849	RatGTEx
UniProt	A0A8I6GIE0	ENTREZGENE, UniProtKB/TrEMBL
	A6KE89	ENTREZGENE, UniProtKB/TrEMBL
	D3ZYI3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-02-12	Armh4	armadillo-like helical domain containing 4	RGD1310110	similar to 3632451O06Rik protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1310110	similar to 3632451O06Rik protein	RGD1310110_predicted	similar to 3632451O06Rik protein (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1310110_predicted	similar to 3632451O06Rik protein (predicted)	LOC361032_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC361032_predicted	similar to 3632451O06Rik protein (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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