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Gene: Mrps35 (mitochondrial ribosomal protein S35) Rattus norvegicus

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Symbol:

Mrps35

Name:

mitochondrial ribosomal protein S35

RGD ID:

1306720

Description:

Predicted to be a structural constituent of ribosome. Predicted to be involved in mitochondrial translation. Predicted to be located in cytosol and mitochondrion. Predicted to be part of mitochondrial small ribosomal subunit. Orthologous to human MRPS35 (mitochondrial ribosomal protein S35); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; bisphenol A.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

28S ribosomal protein S35, mitochondrial; LOC297727; small ribosomal subunit protein mS35

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MRPS35 (mitochondrial ribosomal protein S35)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Mrps35 (mitochondrial ribosomal protein S35)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Mrps35 (mitochondrial ribosomal protein S35)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MRPS35 (mitochondrial ribosomal protein S35)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MRPS35 (mitochondrial ribosomal protein S35)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Mrps35 (mitochondrial ribosomal protein S35)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MRPS35 (mitochondrial ribosomal protein S35)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MRPS35 (mitochondrial ribosomal protein S35)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Mrps35 (mitochondrial ribosomal protein S35)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	OR13G1 (olfactory receptor family 13 subfamily G member 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	MRPS35 (mitochondrial ribosomal protein S35)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Mrps35 (mitochondrial ribosomal protein S35)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	mrps35 (mitochondrial ribosomal protein S35)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	mrps-35	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	RSM24	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Drosophila melanogaster (fruit fly):	mRpS35	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	mrps35	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	181,688,715 - 181,719,403 (+)	NCBI		GRCr8
mRatBN7.2	4	179,958,067 - 179,988,752 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	179,958,083 - 179,987,710 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	186,242,484 - 186,273,380 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	182,026,991 - 182,057,885 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	180,647,436 - 180,678,335 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	181,434,793 - 181,465,318 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	181,434,812 - 181,465,318 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	245,584,679 - 245,615,196 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	184,642,428 - 184,673,097 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	184,887,582 - 184,917,056 (+)	NCBI
Celera	4	168,451,594 - 168,482,258 (+)	NCBI		Celera
Cytogenetic Map	4	q44	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Mrps35	Rat	(1->4)-beta-D-glucan	multiple interactions	ISO	Mrps35 (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of MRPS35 mRNA	CTD	PMID:36331819
Mrps35	Rat	1,2-dimethylhydrazine	multiple interactions	ISO	Mrps35 (Mus musculus)	6480464	Folic Acid inhibits the reaction [1 and 2-Dimethylhydrazine results in increased expression of MRPS35 mRNA]	CTD	PMID:22206623
Mrps35	Rat	1,2-dimethylhydrazine	increases expression	ISO	Mrps35 (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in increased expression of MRPS35 mRNA	CTD	PMID:22206623
Mrps35	Rat	17alpha-ethynylestradiol	increases expression	ISO	Mrps35 (Mus musculus)	6480464	Ethinyl Estradiol results in increased expression of MRPS35 mRNA	CTD	PMID:17942748
Mrps35	Rat	17alpha-ethynylestradiol	multiple interactions	ISO	Mrps35 (Mus musculus)	6480464	[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of MRPS35 mRNA	CTD	PMID:17942748
Mrps35	Rat	2,3,7,8-tetrachlorodibenzodioxine	multiple interactions	ISO	Mrps35 (Mus musculus)	6480464	[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of MRPS35 mRNA	CTD	PMID:17942748
Mrps35	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of MRPS35 mRNA	CTD	PMID:33387578
Mrps35	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Mrps35 (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of MRPS35 mRNA	CTD	PMID:21570461
Mrps35	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of MRPS35 mRNA	CTD	PMID:21215274 and PMID:32109520
Mrps35	Rat	4,4'-diaminodiphenylmethane	decreases expression	ISO	Mrps35 (Mus musculus)	6480464	4 and 4'-diaminodiphenylmethane results in decreased expression of MRPS35 mRNA	CTD	PMID:18648102
Mrps35	Rat	4,4'-sulfonyldiphenol	increases expression	ISO	Mrps35 (Mus musculus)	6480464	bisphenol S results in increased expression of MRPS35 mRNA	CTD	PMID:39298647
Mrps35	Rat	4,4'-sulfonyldiphenol	multiple interactions	EXP		6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of MRPS35 mRNA	CTD	PMID:36041667
Mrps35	Rat	4,4'-sulfonyldiphenol	increases methylation	ISO	MRPS35 (Homo sapiens)	6480464	bisphenol S results in increased methylation of MRPS35 gene	CTD	PMID:31601247
Mrps35	Rat	aflatoxin B1	decreases methylation	ISO	MRPS35 (Homo sapiens)	6480464	Aflatoxin B1 results in decreased methylation of MRPS35 intron	CTD	PMID:30157460
Mrps35	Rat	Aflatoxin B2 alpha	decreases methylation	ISO	MRPS35 (Homo sapiens)	6480464	aflatoxin B2 results in decreased methylation of MRPS35 intron	CTD	PMID:30157460
Mrps35	Rat	aristolochic acid A	decreases expression	ISO	MRPS35 (Homo sapiens)	6480464	aristolochic acid I results in decreased expression of MRPS35 protein	CTD	PMID:33212167
Mrps35	Rat	arsane	multiple interactions	ISO	MRPS35 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of MRPS35 mRNA and [sodium arsenite results in increased abundance of Arsenic] which results in increased expression of MRPS35 mRNA	CTD	PMID:39836092
Mrps35	Rat	arsenic atom	multiple interactions	ISO	MRPS35 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of MRPS35 mRNA and [sodium arsenite results in increased abundance of Arsenic] which results in increased expression of MRPS35 mRNA	CTD	PMID:39836092
Mrps35	Rat	arsenite(3-)	multiple interactions	ISO	MRPS35 (Homo sapiens)	6480464	arsenite promotes the reaction [G3BP1 protein binds to MRPS35 mRNA]	CTD	PMID:32406909
Mrps35	Rat	atrazine	decreases expression	ISO	MRPS35 (Homo sapiens)	6480464	Atrazine results in decreased expression of MRPS35 mRNA	CTD	PMID:22378314
Mrps35	Rat	benzo[a]pyrene	affects methylation	ISO	MRPS35 (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of MRPS35 intron	CTD	PMID:30157460
Mrps35	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of MRPS35 mRNA	CTD	PMID:25181051
Mrps35	Rat	bisphenol A	multiple interactions	EXP		6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of MRPS35 mRNA	CTD	PMID:36041667
Mrps35	Rat	bisphenol A	decreases expression	ISO	MRPS35 (Homo sapiens)	6480464	bisphenol A results in decreased expression of MRPS35 mRNA	CTD	PMID:29275510
Mrps35	Rat	bisphenol AF	increases expression	ISO	MRPS35 (Homo sapiens)	6480464	bisphenol AF results in increased expression of MRPS35 protein	CTD	PMID:34186270
Mrps35	Rat	Bisphenol B	increases expression	ISO	MRPS35 (Homo sapiens)	6480464	bisphenol B results in increased expression of MRPS35 protein	CTD	PMID:34186270
Mrps35	Rat	bisphenol F	multiple interactions	EXP		6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in decreased expression of MRPS35 mRNA	CTD	PMID:36041667
Mrps35	Rat	cadmium dichloride	decreases expression	ISO	MRPS35 (Homo sapiens)	6480464	Cadmium Chloride results in decreased expression of MRPS35 mRNA	CTD	PMID:38568856
Mrps35	Rat	cyclosporin A	increases expression	ISO	MRPS35 (Homo sapiens)	6480464	Cyclosporine results in increased expression of MRPS35 mRNA	CTD	PMID:25562108
Mrps35	Rat	Dibutyl phosphate	affects expression	ISO	MRPS35 (Homo sapiens)	6480464	di-n-butylphosphoric acid affects the expression of MRPS35 mRNA	CTD	PMID:37042841
Mrps35	Rat	dibutyl phthalate	decreases expression	ISO	Mrps35 (Mus musculus)	6480464	Dibutyl Phthalate results in decreased expression of MRPS35 mRNA	CTD	PMID:21266533
Mrps35	Rat	doxorubicin	increases expression	ISO	MRPS35 (Homo sapiens)	6480464	Doxorubicin results in increased expression of MRPS35 mRNA	CTD	PMID:29803840
Mrps35	Rat	enzyme inhibitor	multiple interactions	ISO	MRPS35 (Homo sapiens)	6480464	[Enzyme Inhibitors results in decreased activity of OGA protein] which results in increased O-linked glycosylation of MRPS35 protein	CTD	PMID:23301498
Mrps35	Rat	fenthion	increases expression	ISO	Mrps35 (Mus musculus)	6480464	Fenthion results in increased expression of MRPS35 mRNA	CTD	PMID:34813904
Mrps35	Rat	flutamide	increases expression	EXP		6480464	Flutamide results in increased expression of MRPS35 mRNA	CTD	PMID:24136188
Mrps35	Rat	folic acid	multiple interactions	ISO	Mrps35 (Mus musculus)	6480464	Folic Acid inhibits the reaction [1 and 2-Dimethylhydrazine results in increased expression of MRPS35 mRNA]	CTD	PMID:22206623
Mrps35	Rat	gentamycin	decreases expression	EXP		6480464	Gentamicins results in decreased expression of MRPS35 mRNA	CTD	PMID:33387578
Mrps35	Rat	glyphosate	affects methylation	EXP		6480464	Glyphosate affects the methylation of MRPS35 gene	CTD	PMID:35440735
Mrps35	Rat	hydrogen peroxide	affects expression	ISO	MRPS35 (Homo sapiens)	6480464	Hydrogen Peroxide affects the expression of MRPS35 mRNA	CTD	PMID:20044591
Mrps35	Rat	ivermectin	decreases expression	ISO	MRPS35 (Homo sapiens)	6480464	Ivermectin results in decreased expression of MRPS35 protein	CTD	PMID:32959892
Mrps35	Rat	lipopolysaccharide	multiple interactions	ISO	MRPS35 (Homo sapiens)	6480464	[Acetaminophen co-treated with Lipopolysaccharides] results in decreased expression of MRPS35 mRNA	CTD	PMID:31059760
Mrps35	Rat	manganese atom	multiple interactions	ISO	MRPS35 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of MRPS35 mRNA and [manganese chloride results in increased abundance of Manganese] which results in increased expression of MRPS35 mRNA	CTD	PMID:39836092
Mrps35	Rat	manganese(0)	multiple interactions	ISO	MRPS35 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of MRPS35 mRNA and [manganese chloride results in increased abundance of Manganese] which results in increased expression of MRPS35 mRNA	CTD	PMID:39836092
Mrps35	Rat	manganese(II) chloride	multiple interactions	ISO	MRPS35 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of MRPS35 mRNA and [manganese chloride results in increased abundance of Manganese] which results in increased expression of MRPS35 mRNA	CTD	PMID:39836092
Mrps35	Rat	nimesulide	increases expression	EXP		6480464	nimesulide results in increased expression of MRPS35 mRNA	CTD	PMID:24136188
Mrps35	Rat	oxaliplatin	multiple interactions	EXP		6480464	[oxaliplatin co-treated with Topotecan] results in decreased expression of MRPS35 mRNA	CTD	PMID:25729387
Mrps35	Rat	ozone	multiple interactions	ISO	Mrps35 (Mus musculus)	6480464	[Air Pollutants results in increased abundance of [Ozone co-treated with Soot]] which results in increased expression of MRPS35 mRNA	CTD	PMID:34911549
Mrps35	Rat	paracetamol	affects expression	ISO	Mrps35 (Mus musculus)	6480464	Acetaminophen affects the expression of MRPS35 mRNA	CTD	PMID:17562736
Mrps35	Rat	paracetamol	multiple interactions	ISO	MRPS35 (Homo sapiens)	6480464	[Acetaminophen co-treated with Lipopolysaccharides] results in decreased expression of MRPS35 mRNA	CTD	PMID:31059760
Mrps35	Rat	paracetamol	decreases expression	ISO	MRPS35 (Homo sapiens)	6480464	Acetaminophen results in decreased expression of MRPS35 mRNA	CTD	PMID:25704631 and PMID:29067470
Mrps35	Rat	perfluorooctane-1-sulfonic acid	multiple interactions	ISO	Mrps35 (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of MRPS35 mRNA	CTD	PMID:36331819
Mrps35	Rat	sodium arsenite	multiple interactions	ISO	MRPS35 (Homo sapiens)	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased abundance of Manganese]] results in increased expression of MRPS35 mRNA and [sodium arsenite results in increased abundance of Arsenic] which results in increased expression of MRPS35 mRNA	CTD	PMID:39836092
Mrps35	Rat	sunitinib	increases expression	ISO	MRPS35 (Homo sapiens)	6480464	Sunitinib results in increased expression of MRPS35 mRNA	CTD	PMID:31533062
Mrps35	Rat	testosterone	decreases expression	ISO	MRPS35 (Homo sapiens)	6480464	Testosterone results in decreased expression of MRPS35 mRNA	CTD	PMID:33359661
Mrps35	Rat	tetrachloromethane	decreases expression	ISO	Mrps35 (Mus musculus)	6480464	Carbon Tetrachloride results in decreased expression of MRPS35 mRNA	CTD	PMID:31919559
Mrps35	Rat	thioacetamide	decreases expression	EXP		6480464	Thioacetamide results in decreased expression of MRPS35 mRNA	CTD	PMID:34492290
Mrps35	Rat	titanium dioxide	decreases methylation	ISO	Mrps35 (Mus musculus)	6480464	titanium dioxide results in decreased methylation of MRPS35 promoter	CTD	PMID:35295148
Mrps35	Rat	topotecan	multiple interactions	EXP		6480464	[oxaliplatin co-treated with Topotecan] results in decreased expression of MRPS35 mRNA	CTD	PMID:25729387
Mrps35	Rat	triphenyl phosphate	affects expression	ISO	MRPS35 (Homo sapiens)	6480464	triphenyl phosphate affects the expression of MRPS35 mRNA	CTD	PMID:37042841
Mrps35	Rat	triptonide	decreases expression	ISO	Mrps35 (Mus musculus)	6480464	triptonide results in decreased expression of MRPS35 mRNA	CTD	PMID:33045310
Mrps35	Rat	valproic acid	affects expression	ISO	MRPS35 (Homo sapiens)	6480464	Valproic Acid affects the expression of MRPS35 mRNA	CTD	PMID:25979313

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Mrps35	Rat	mitochondrial translation	involved_in	IEA	InterPro:IPR039848	1600115	GO_REF:0000002	InterPro	GO_REF:0000002

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Mrps35	Rat	cytosol	located_in	ISO	MRPS35 (Homo sapiens) and UniProtKB:P82673-1	1624291		RGD	GO_REF:0000052
Mrps35	Rat	mitochondrial small ribosomal subunit	part_of	IBA	PANTHER:PTN000337133 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Mrps35	Rat	mitochondrion	located_in	ISO	MRPS35 (Homo sapiens) and UniProtKB:P82673-1	1624291		RGD	GO_REF:0000052

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Mrps35	Rat	protein binding	enables	ISO	MRPS35 (Homo sapiens)	1624291	UniProtKB:P51398 more ...	RGD	PMID:30021884 and PMID:33961781
Mrps35	Rat	structural constituent of ribosome	enables	IBA	PANTHER:PTN000337133 and SGD:S000002582	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Mrps35	Rat	structural constituent of ribosome	enables	IEA	InterPro:IPR039848	1600115	GO_REF:0000002	InterPro	GO_REF:0000002

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:18614015	PMID:22681889	PMID:25931508	PMID:34800366

Mrps35
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	181,688,715 - 181,719,403 (+)	NCBI		GRCr8
mRatBN7.2	4	179,958,067 - 179,988,752 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	179,958,083 - 179,987,710 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	186,242,484 - 186,273,380 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	182,026,991 - 182,057,885 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	180,647,436 - 180,678,335 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	181,434,793 - 181,465,318 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	181,434,812 - 181,465,318 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	245,584,679 - 245,615,196 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	184,642,428 - 184,673,097 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	184,887,582 - 184,917,056 (+)	NCBI
Celera	4	168,451,594 - 168,482,258 (+)	NCBI		Celera
Cytogenetic Map	4	q44	NCBI

MRPS35
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	27,710,832 - 27,756,295 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	27,710,822 - 27,756,295 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	27,863,765 - 27,909,228 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	27,754,996 - 27,800,495 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	27,754,995 - 27,800,494	NCBI
Celera	12	33,009,297 - 33,054,807 (+)	NCBI		Celera
Cytogenetic Map	12	p11.22	NCBI
HuRef	12	27,632,567 - 27,678,311 (+)	NCBI		HuRef
CHM1_1	12	27,828,692 - 27,874,201 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	27,582,568 - 27,628,010 (+)	NCBI		T2T-CHM13v2.0

Mrps35
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	146,944,270 - 146,972,399 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	146,944,262 - 146,975,489 (+)	Ensembl		GRCm39 Ensembl
GRCm38	6	147,042,728 - 147,070,906 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	147,042,764 - 147,073,991 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	146,991,292 - 147,019,424 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	146,999,974 - 147,028,071 (+)	NCBI		MGSCv36	mm8
Celera	6	150,078,704 - 150,106,864 (+)	NCBI		Celera
Cytogenetic Map	6	G3	NCBI
cM Map	6	77.7	NCBI

Mrps35
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955505	7,139,870 - 7,181,201 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955505	7,139,870 - 7,181,201 (-)	NCBI	ChiLan1.0	ChiLan1.0

MRPS35
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	69,058,123 - 69,104,222 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	69,054,522 - 69,099,668 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	58,555,661 - 58,600,799 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	61,175,326 - 61,219,680 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

MRPS35
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	19,984,220 - 20,025,734 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	19,984,309 - 20,025,734 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	26,374,570 - 26,415,986 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	20,177,752 - 20,219,604 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	20,172,019 - 20,219,599 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	19,984,550 - 20,026,238 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	20,011,245 - 20,052,931 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	26,531,536 - 26,573,313 (+)	NCBI		UU_Cfam_GSD_1.0

Mrps35
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	202,571,453 - 202,572,515 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936480	11,507,692 - 11,509,010 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MRPS35
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	45,973,693 - 46,030,453 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	45,973,698 - 46,023,003 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	49,541,791 - 49,591,091 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MRPS35
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	27,432,804 - 27,476,443 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	27,432,871 - 27,476,627 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666069	7,575,534 - 7,619,128 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mrps35
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624935	292,243 - 350,667 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Mrps35
248 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	142
Count of miRNA genes:	112
Interacting mature miRNAs:	123
Transcripts:	ENSRNOT00000002520
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
6478754	Anxrr43	Anxiety related response QTL 43		0.14035	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	144639524	182687754	Rat
2303623	Vencon2	Ventilatory control QTL 2	3.8		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	4	135204660	180204660	Rat
6478693	Anxrr32	Anxiety related response QTL 32		0.00092	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	144639524	182687754	Rat
2293659	Bmd35	Bone mineral density QTL 35	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	4	137755016	181392681	Rat
1578674	Bmd12	Bone mineral density QTL 12	3.8		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	4	135699135	180699135	Rat
10401796	Kidm48	Kidney mass QTL 48			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	145568712	182687754	Rat
6478718	Anxrr34	Anxiety related response QTL 34		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	11320076	180699135	Rat
6478748	Anxrr42	Anxiety related response QTL 42		0.28008	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
6478700	Anxrr33	Anxiety related response QTL 33		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
1300109	Rf13	Renal function QTL 13	3.91		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	4	157710145	182687754	Rat
10053718	Scort25	Serum corticosterone level QTL 25	2.15	0.0097	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	155561574	182687754	Rat

RH129064

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	179,987,269 - 179,987,487 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	181,463,837 - 181,464,054	NCBI	Rnor6.0
Rnor_5.0	4	245,613,715 - 245,613,932	UniSTS	Rnor5.0
RGSC_v3.4	4	184,671,616 - 184,671,833	UniSTS	RGSC3.4
Celera	4	168,480,788 - 168,481,005	UniSTS
RH 3.4 Map	4	1090.1	UniSTS
Cytogenetic Map	4	q44	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001106628	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237676	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237677	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592600	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107482	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107483	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285920	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285921	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000002520 ⟹ ENSRNOP00000002520

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	179,958,083 - 179,987,710 (+)	Ensembl
Rnor_6.0 Ensembl	4	181,434,812 - 181,465,318 (+)	Ensembl

RefSeq Acc Id:

NM_001106628 ⟹ NP_001100098

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,688,736 - 181,719,403 (+)	NCBI
mRatBN7.2	4	179,958,083 - 179,988,752 (+)	NCBI
Rnor_6.0	4	181,434,812 - 181,465,318 (+)	NCBI
Rnor_5.0	4	245,584,679 - 245,615,196 (+)	NCBI
RGSC_v3.4	4	184,642,428 - 184,673,097 (+)	RGD
Celera	4	168,451,594 - 168,482,258 (+)	RGD

Sequence:

show sequence

GCTTGTCCGTTCTGGCTCGCCGTCCTTCAGCATGGCTGCCGCTTCGCTGCAGCTAAGGCTGACCCTATACCCGGGAGCGCGCGGCCTGCGCACCTTCTCCTCAGTCGCCAGGCCCGCGGCTCCAAGAG
CCGGCCCGCGTACAGTATCCAGAGGTGAAAGGCCGATGAGAAGAAAGGCACTGCCTCCTAGGACGGAGAAGATGGAGACTGACCAGGACTGGCCCAGCGTTTACCCTACTGCTGCACCGTTTAAACCC
TCGGCTGTTCCTCTACCTGTTCGAATGGGATATCCAGTGAAGAAGGGTGTGCCCATGGCGAAGGAGGGGAATGTAGAGCTTCTAAAGATCCCAAATTTTCTGCATTTGACTCCTGTGGCAATTAAAAG
GCACTGCGGAGCTCTAAAAGATTTCTGCACTGAGTGGCCAGCTGCACTCGACAGTGATGAGAAATGTGAGAAGCATTTTCCAGTCGAGATTGACACAGCGGATTATGTGTCATCAGGACCGTCCATTC
GAAACCCCAGAGCGCGAGCGGTAACTTTAAGGGTTAAACTTTCCAGTTTGAATTTAGACAATCATGCAAAGAAAAAACTTATTAAACTTGTAGGCGAGCGGTACTGCAAGACTACTGATGTGCTCACT
ATCAAGACAGACAGATGCCCTTTGAAGCGGCAGAACTATGACTATGCAATGTATCTCCTTACAGTCCTGTACCATGAATCTTGGAAAACTGAAGAATGGGAAAAAAATAAGACTGAGGAAGACATGGA
TGAGTATGTGTGGGCGAAGAGCTCCTCGGAGAACAGCGTCCTCCAGACCCTGCTGCAGATGAGAGCTGCCGAGAGCAGTGTGGCGCCGAGCAGAGAAGAGCTGCTGGGGACTAAAGAGGTCGAAGATT
ACCAGAAGTGTGTCGTTCGTCTCAAGAATGAGGGGGAGAACGAGGCAAGCCTTGCTCAGTACAAAGAGTCTGTGAAGAGATTATTAAATTTGGCCTGAAGTCTGAACTAGAAACCTCTGTATTAATTT
TATAATGTATTTAGTCACTGGTTTGATATAAATGGGAGAATACTTAAGAATACTGTCTTAGGTAGCATTGTGCCTTTCAGACTCTTGTGCTGTGGGGGTCAGGATGGGGCTAGGGATTGTGGTTTCTA
TGTTTCTGGCATATTTTGACCTTTTTTTTTTTTTTTCTTTTTTTCGGAGCTGGGGATCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCTCTCTACCACTGAGCTAAATCCCCAACCCCTTGACCTTA
TTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTCTTTTTTTTCGGAGCTGGGGAGCTGGGGACTGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCTGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAG
CGCTCTACCGCTGAGCTAAATCCCCAGCCCCCCTTGACCTTATTTTTATACATCACCTTAATCCTCCCCCAATTTCAGAGCATAATTTTTTGATTAGCTGCTATGTCTCCACTGTTTGGGTTTAGTGA
TTGCTTTTGATCAATAACTTTGGTTACTAAGGATACCTAGCCCAGTGCCTGACCAAGCCCTCAGTGCCCCTCTGTGGCCAGCCTCGAGGAGGCTGCACTCTCCTGTGGACTGCAGCCAGGCTAGCTCT
TGCTCCTCATCCACCCCAGCATCACATTCAATGGTGCTCTGTCTCACAGGCCACTTAGCAGCAGACAGAAAACTCTCCTGGTAGCTGTCCCTTTGCAGCTGGCCTTTGCAGGTGGCTTAGTTTCATAG
CTTAGGTAGTGAGCCGCACAGCAGCACAGCACCAGTACTAATAAGATTTGGTTTTTGTTGTGAGAACAGAGAACACAGACAACCAACCAATCCTGGAGGATGTAAAGCTGTTATGGCAAAAACTGCAT
CCAGATGTGCTGGCCACTTCCTGATTTAGGCTTGTGTGATAGAGGATTGGGGTTCCCCGTGGAAACAAGTGATTAGCTGCTCGACCCACCCACAGCTGCCTGTCTTGCAGTCTGAAGTTCTCTGCCTT
CCTGTGGCCATTTGATATTGTGTAAGCTCTGATTAGCTAAACTCTGCCTCTAGAGCTCATTGTCCCAGGCCCAGCTGGCAGGAAGGATAGGTGGAGACCTGCCCACAGCCTTCTCTCTGCTCCTTCTG
CCCTTACAGTCACAGCTCAGTAGAAAACGTGGGCCAGGACAACAGATGGCT

hide sequence

RefSeq Acc Id:

XM_006237676 ⟹ XP_006237738

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,688,715 - 181,718,175 (+)	NCBI
mRatBN7.2	4	179,958,068 - 179,987,522 (+)	NCBI
Rnor_6.0	4	181,434,794 - 181,464,089 (+)	NCBI
Rnor_5.0	4	245,584,679 - 245,615,196 (+)	NCBI

Sequence:

show sequence

CCGCCCCGCCCCCTCAGCGCTTGTCCGTTCTGGCTCGCCGTCCTTCAGCATGGCTGCCGCTTCG
CTGCAGCTAAGGCTGACCCTATACCCGGGAGCGCGCGGCCTGCGCACCTTCTCCTCAGTCGCCAGGCCCGCGGCTCCAAGAGCCGGCCCGCTATCCAGAGGTGAAAGGCCGATGAGAAGAAAGGCACT
GCCTCCTAGGACGGAGAAGATGGAGACTGACCAGGACTGGCCCAGCGTTTACCCTACTGCTGCACCGTTTAAACCCTCGGCTGTTCCTCTACCTGTTCGAATGGGATATCCAGTGAAGAAGGGTGTGC
CCATGGCGAAGGAGGGGAATGTAGAGCTTCTAAAGATCCCAAATTTTCTGCATTTGACTCCTGTGGCAATTAAAAGGCACTGCGGAGCTCTAAAAGATTTCTGCACTGAGTGGCCAGCTGCACTCGAC
AGTGATGAGAAATGTGAGAAGCATTTTCCAGTCGAGATTGACACAGCGGATTATGTGTCATCAGGACCGTCCATTCGAAACCCCAGAGCGCGAGCGGTAACTTTAAGGGTTAAACTTTCCAGTTTGAA
TTTAGACAATCATGCAAAGAAAAAACTTATTAAACTTGTAGGCGAGCGGTACTGCAAGACTACTGATGTGCTCACTATCAAGACAGACAGATGCCCTTTGAAGCGGCAGAACTATGACTATGCAATGT
ATCTCCTTACAGTCCTGTACCATGAATCTTGGAAAACTGAAGAATGGGAAAAAAATAAGACTGAGGAAGACATGGATGAGTATGTGTGGGCGAAGAGCTCCTCGGAGAACAGCGTCCTCCAGACCCTG
CTGCAGATGAGAGCTGCCGAGAGCAGTGTGGCGCCGAGCAGAGAAGAGCTGCTGGGGACTAAAGAGGTCGAAGATTACCAGAAGTGTGTCGTTCGTCTCAAGAATGAGGGGGAGAACGAGGCAAGCCT
TGCTCAGTACAAAGAGTCTGTGAAGAGATTATTAAATTTGGCCTGAAGTCTGAACTAGAAA

hide sequence

RefSeq Acc Id:

XM_006237677 ⟹ XP_006237739

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,688,720 - 181,718,175 (+)	NCBI
mRatBN7.2	4	179,958,067 - 179,987,522 (+)	NCBI
Rnor_6.0	4	181,434,793 - 181,464,089 (+)	NCBI
Rnor_5.0	4	245,584,679 - 245,615,196 (+)	NCBI

Sequence:

show sequence

CCCGCCCCGCCCCCTCAGCGCTTGTCCGTTCTGGCTCGCCGTCCTTCAGCATGGCTGCCGCTTC
GCTGCAGCTAAGGCTGACCCTATACCCGGGAGCGCGCGGCCTGCGCACCTTCTCCTCAGTCGCCAGGCCCGCGGCTCCAAGAGCCGGCCCGCGTACAGTATCCAGAGGTGAAAGGCCGATGAGAAGAA
AGGCACTGCCTCCTAGGACGGAGAAGATGGAGACTGACCAGGACTGGCCCAGCGTTTACCCTACTGCTGCACCGTTTAAACCCTCGGCTGTTCCTCTACCTGTTCGAATGGGATATCCAGTGAAGAAG
GGTGTGCCCATGGCGAAGGAGGGGAATGTAGAGCTTCTAAAGATCCCAAATTTTCTGCATTTGACTCCTGTGGCAATTAAAAGGCACTGCGGAGCTCTAAAAGATTTCTGCACTGAGTGGCCAGCTGC
ACTCGACAGTGATGAGAAATGTGAGAAGCATTTTCCAGTCGAGATTGACACAGCGGATTATGTGTCATCAGGACCGTCCATTCGAAACCCCAGAGCGCGAGCGGTAACTTTAAGGAAAACTGAAGAAT
GGGAAAAAAATAAGACTGAGGAAGACATGGATGAGTATGTGTGGGCGAAGAGCTCCTCGGAGAACAGCGTCCTCCAGACCCTGCTGCAGATGAGAGCTGCCGAGAGCAGTGTGGCGCCGAGCAGAGAA
GAGCTGCTGGGGACTAAAGAGGTCGAAGATTACCAGAAGTGTGTCGTTCGTCTCAAGAATGAGGGGGAGAACGAGGCAAGCCTTGCTCAGTACAAAGAGTCTGTGAAGAGATTATTAAATTTGGCCTG
AAGTCTGAACTAGAAA

hide sequence

RefSeq Acc Id:

XM_017592600 ⟹ XP_017448089

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,688,735 - 181,718,175 (+)	NCBI
mRatBN7.2	4	179,958,082 - 179,987,522 (+)	NCBI
Rnor_6.0	4	181,434,863 - 181,464,089 (+)	NCBI

Sequence:

show sequence

GCTAAGGCTGACCCTATACCCGGGAGCGCGCGGCCTGCGCACCTTCTCCTCAGTCGCCAGGCCC
GCGGCTCCAAGAGCCGGCCCGCGCACTGCCTCCTAGGACGGAGAAGATGGAGACTGACCAGGACTGGCCCAGCGTTTACCCTACTGCTGCACCGTTTAAACCCTCGGCTGTTCCTCTACCTGTTCGAA
TGGGATATCCAGTGAAGAAGGGTGTGCCCATGGCGAAGGAGGGGAATGTAGAGCTTCTAAAGATCCCAAATTTTCTGCATTTGACTCCTGTGGCAATTAAAAGGCACTGCGGAGCTCTAAAAGATTTC
TGCACTGAGTGGCCAGCTGCACTCGACAGTGATGAGAAATGTGAGAAGCATTTTCCAGTCGAGATTGACACAGCGGATTATGTGTCATCAGGACCGTCCATTCGAAACCCCAGAGCGCGAGCGGTAAC
TTTAAGGGTTAAACTTTCCAGTTTGAATTTAGACAATCATGCAAAGAAAAAACTTATTAAACTTGTAGGCGAGCGGTACTGCAAGACTACTGATGTGCTCACTATCAAGACAGACAGATGCCCTTTGA
AGCGGCAGAACTATGACTATGCAATGTATCTCCTTACAGTCCTGTACCATGAATCTTGGAAAACTGAAGAATGGGAAAAAAATAAGACTGAGGAAGACATGGATGAGTATGTGTGGGCGAAGAGCTCC
TCGGAGAACAGCGTCCTCCAGACCCTGCTGCAGATGAGAGCTGCCGAGAGCAGTGTGGCGCCGAGCAGAGAAGAGCTGCTGGGGACTAAAGAGGTCGAAGATTACCAGAAGTGTGTCGTTCGTCTCAA
GAATGAGGGGGAGAACGAGGCAAGCCTTGCTCAGTACAAAGAGTCTGTGAAGAGATTATTAAATTTGGCCTGAAGTCTGAACTAGAAA

hide sequence

RefSeq Acc Id:

XM_039107482 ⟹ XP_038963410

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,688,715 - 181,718,175 (+)	NCBI
mRatBN7.2	4	179,958,093 - 179,987,522 (+)	NCBI

RefSeq Acc Id:

XM_039107483 ⟹ XP_038963411

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,688,720 - 181,718,041 (+)	NCBI
mRatBN7.2	4	179,958,067 - 179,987,522 (+)	NCBI

RefSeq Acc Id:

XM_063285920 ⟹ XP_063141990

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,688,720 - 181,718,175 (+)	NCBI

RefSeq Acc Id:

XM_063285921 ⟹ XP_063141991

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	181,688,720 - 181,718,175 (+)	NCBI


Protein RefSeqs	NP_001100098	(Get FASTA)	NCBI Sequence Viewer
	XP_006237738	(Get FASTA)	NCBI Sequence Viewer
	XP_006237739	(Get FASTA)	NCBI Sequence Viewer
	XP_017448089	(Get FASTA)	NCBI Sequence Viewer
	XP_038963410	(Get FASTA)	NCBI Sequence Viewer
	XP_038963411	(Get FASTA)	NCBI Sequence Viewer
	XP_063141990	(Get FASTA)	NCBI Sequence Viewer
	XP_063141991	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM01400	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000002520.5
	ENSRNOP00000110763

RefSeq Acc Id:

NP_001100098 ⟸ NM_001106628

- UniProtKB:

D4A9Z6 (UniProtKB/TrEMBL), A6IN39 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAASLQLRLTLYPGARGLRTFSSVARPAAPRAGPRTVSRGERPMRRKALPPRTEKMETDQDWPSVYPTAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNVELLKIPNFLHLTPVAIKRHCGALKDFCT
EWPAALDSDEKCEKHFPVEIDTADYVSSGPSIRNPRARAVTLRVKLSSLNLDNHAKKKLIKLVGERYCKTTDVLTIKTDRCPLKRQNYDYAMYLLTVLYHESWKTEEWEKNKTEEDMDEYVWAKSSSE
NSVLQTLLQMRAAESSVAPSREELLGTKEVEDYQKCVVRLKNEGENEASLAQYKESVKRLLNLA

hide sequence

RefSeq Acc Id:

XP_006237739 ⟸ XM_006237677

- Peptide Label:

isoform X3

- Sequence:

show sequence

MAAASLQLRLTLYPGARGLRTFSSVARPAAPRAGPRTVSRGERPMRRKALPPRTEKMETDQDWP
SVYPTAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNVELLKIPNFLHLTPVAIKRHCGALKDFCTEWPAALDSDEKCEKHFPVEIDTADYVSSGPSIRNPRARAVTLRKTEEWEKNKTEEDMDEYVWAK
SSSENSVLQTLLQMRAAESSVAPSREELLGTKEVEDYQKCVVRLKNEGENEASLAQYKESVKRLLNLA

hide sequence

RefSeq Acc Id:

XP_006237738 ⟸ XM_006237676

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAAASLQLRLTLYPGARGLRTFSSVARPAAPRAGPLSRGERPMRRKALPPRTEKMETDQDWPSVYPTAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNVELLKIPNFLHLTPVAIKRHCGALKDFCTEW
PAALDSDEKCEKHFPVEIDTADYVSSGPSIRNPRARAVTLRVKLSSLNLDNHAKKKLIKLVGERYCKTTDVLTIKTDRCPLKRQNYDYAMYLLTVLYHESWKTEEWEKNKTEEDMDEYVWAKSSSENS
VLQTLLQMRAAESSVAPSREELLGTKEVEDYQKCVVRLKNEGENEASLAQYKESVKRLLNLA

hide sequence

RefSeq Acc Id:

XP_017448089 ⟸ XM_017592600

- Peptide Label:

isoform X2

- Sequence:

show sequence

METDQDWPSVYPTAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNVELLKIPNFLHLTPVAIKRHC
GALKDFCTEWPAALDSDEKCEKHFPVEIDTADYVSSGPSIRNPRARAVTLRVKLSSLNLDNHAKKKLIKLVGERYCKTTDVLTIKTDRCPLKRQNYDYAMYLLTVLYHESWKTEEWEKNKTEEDMDEY
VWAKSSSENSVLQTLLQMRAAESSVAPSREELLGTKEVEDYQKCVVRLKNEGENEASLAQYKESVKRLLNLA

hide sequence

Ensembl Acc Id:

ENSRNOP00000002520 ⟸ ENSRNOT00000002520

Protein Domains

Small ribosomal subunit protein mS35 mitochondrial

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A9Z6-F1-model_v2	AlphaFold	D4A9Z6	1-320	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13693510

Promoter ID:

EPDNEW_R4034

Type:

multiple initiation site

Name:

Mrps35_1

Description:

mitochondrial ribosomal protein S35

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	181,434,812 - 181,434,872	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-42419	BioCyc
Ensembl Genes	ENSRNOG00000001842	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000002520.8	UniProtKB/TrEMBL
	ENSRNOT00000170282	ENTREZGENE
InterPro	Ribosomal_S24/S35	UniProtKB/TrEMBL
	Ribosomal_S24/S35_mit	UniProtKB/TrEMBL
KEGG Report	rno:297727	UniProtKB/TrEMBL
NCBI Gene	297727	ENTREZGENE
PANTHER	28S RIBOSOMAL PROTEIN S35, MITOCHONDRIAL	UniProtKB/TrEMBL
	PTHR13490	UniProtKB/TrEMBL
Pfam	MRP-S28	UniProtKB/TrEMBL
PhenoGen	Mrps35	PhenoGen
RatGTEx	ENSRNOG00000001842	RatGTEx
UniProt	A6IN39	ENTREZGENE, UniProtKB/TrEMBL
	D4A9Z6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Mrps35	mitochondrial ribosomal protein S35	Mrps35_predicted	mitochondrial ribosomal protein S35 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Mrps35_predicted	mitochondrial ribosomal protein S35 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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