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Gene: Fam120a (family with sequence similarity 120 member A) Rattus norvegicus

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Symbol:

Fam120a

Name:

family with sequence similarity 120 member A

RGD ID:

1306643

Description:

Predicted to be located in cytosol. Predicted to be active in nucleus. Orthologous to human FAM120A (family with sequence similarity 120 member A); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; acetamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

constitutive coactivator of PPAR-gamma-like protein 1; family with sequence similarity 120A; LOC291019; RGD1306643; similar to Protein C9orf10; similar to Protein CXorf17 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	15,890,151 - 15,981,337 (+)	NCBI		GRCr8
mRatBN7.2	17	15,684,233 - 15,774,964 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	15,684,233 - 15,774,964 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	15,570,799 - 15,654,196 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	17,175,834 - 17,259,232 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	15,497,553 - 15,580,950 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	16,106,101 - 16,196,054 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	16,106,137 - 16,194,478 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	18,168,308 - 18,257,857 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	21,673,373 - 21,764,457 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	21,630,559 - 21,764,451 (+)	NCBI
Celera	17	15,413,330 - 15,503,374 (+)	NCBI		Celera
Cytogenetic Map	17	p14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fam120a	Rat	hiatus hernia		ISO	FAM120A (Homo sapiens)	8554872	ClinVar Annotator: match by term: Hiatus hernia	ClinVar

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fam120a	Rat	(S)-nicotine	decreases expression	ISO	Fam120a (Mus musculus)	6480464	Nicotine results in decreased expression of FAM120A mRNA	CTD	PMID:17997037
Fam120a	Rat	1,2-dimethylhydrazine	multiple interactions	ISO	Fam120a (Mus musculus)	6480464	[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of FAM120A mRNA	CTD	PMID:22206623
Fam120a	Rat	1,2-dimethylhydrazine	decreases expression	ISO	Fam120a (Mus musculus)	6480464	1 and 2-Dimethylhydrazine results in decreased expression of FAM120A mRNA	CTD	PMID:22206623
Fam120a	Rat	17beta-estradiol	decreases expression	ISO	Fam120a (Mus musculus)	6480464	Estradiol results in decreased expression of FAM120A mRNA	CTD	PMID:39298647
Fam120a	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of FAM120A mRNA	CTD	PMID:33387578
Fam120a	Rat	2,6-dimethoxyphenol	multiple interactions	ISO	FAM120A (Homo sapiens)	6480464	[Sodium Chloride co-treated with pyrogallol 1 and 3-dimethyl ether] results in increased expression of and affects the localization of FAM120A protein	CTD	PMID:38598786
Fam120a	Rat	2-methylcholine	affects expression	ISO	FAM120A (Homo sapiens)	6480464	beta-methylcholine affects the expression of FAM120A mRNA	CTD	PMID:21179406
Fam120a	Rat	3-isobutyl-1-methyl-7H-xanthine	multiple interactions	ISO	FAM120A (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in decreased expression of FAM120A mRNA more ...	CTD	PMID:28628672
Fam120a	Rat	4,4'-sulfonyldiphenol	multiple interactions	ISO	FAM120A (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol S] results in decreased expression of FAM120A mRNA	CTD	PMID:28628672
Fam120a	Rat	4,4'-sulfonyldiphenol	multiple interactions	EXP		6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in increased expression of FAM120A mRNA	CTD	PMID:36041667
Fam120a	Rat	4,4'-sulfonyldiphenol	affects expression	ISO	Fam120a (Mus musculus)	6480464	bisphenol S affects the expression of FAM120A mRNA	CTD	PMID:39298647
Fam120a	Rat	acetamide	decreases expression	EXP		6480464	acetamide results in decreased expression of FAM120A mRNA	CTD	PMID:31881176
Fam120a	Rat	aflatoxin B1	increases expression	ISO	Fam120a (Mus musculus)	6480464	Aflatoxin B1 results in increased expression of FAM120A mRNA	CTD	PMID:19770486
Fam120a	Rat	aflatoxin B1	increases methylation	ISO	FAM120A (Homo sapiens)	6480464	Aflatoxin B1 results in increased methylation of FAM120A intron	CTD	PMID:30157460
Fam120a	Rat	aflatoxin B1	decreases methylation	ISO	FAM120A (Homo sapiens)	6480464	Aflatoxin B1 results in decreased methylation of FAM120A gene	CTD	PMID:27153756
Fam120a	Rat	Aflatoxin B2 alpha	increases methylation	ISO	FAM120A (Homo sapiens)	6480464	aflatoxin B2 results in increased methylation of FAM120A intron	CTD	PMID:30157460
Fam120a	Rat	arsenite(3-)	multiple interactions	ISO	FAM120A (Homo sapiens)	6480464	arsenite inhibits the reaction [G3BP1 protein binds to FAM120A mRNA]	CTD	PMID:32406909
Fam120a	Rat	atrazine	increases expression	ISO	FAM120A (Homo sapiens)	6480464	Atrazine results in increased expression of FAM120A mRNA	CTD	PMID:22378314
Fam120a	Rat	benzo[a]pyrene	affects methylation	ISO	FAM120A (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of FAM120A intron	CTD	PMID:30157460
Fam120a	Rat	bis(2-ethylhexyl) phthalate	decreases expression	ISO	Fam120a (Mus musculus)	6480464	Diethylhexyl Phthalate results in decreased expression of FAM120A mRNA	CTD	PMID:33754040 and PMID:34319233
Fam120a	Rat	bisphenol A	decreases expression	ISO	FAM120A (Homo sapiens)	6480464	bisphenol A results in decreased expression of FAM120A mRNA	CTD	PMID:25047013
Fam120a	Rat	bisphenol A	multiple interactions	EXP		6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in increased expression of FAM120A mRNA	CTD	PMID:36041667
Fam120a	Rat	bisphenol A	decreases expression	ISO	Fam120a (Mus musculus)	6480464	bisphenol A results in decreased expression of FAM120A mRNA	CTD	PMID:33221593
Fam120a	Rat	bisphenol A	increases methylation	EXP		6480464	bisphenol A results in increased methylation of FAM120A gene	CTD	PMID:28505145
Fam120a	Rat	bisphenol A	multiple interactions	ISO	FAM120A (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in decreased expression of FAM120A mRNA	CTD	PMID:28628672
Fam120a	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of FAM120A mRNA	CTD	PMID:25181051
Fam120a	Rat	bisphenol F	multiple interactions	ISO	FAM120A (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] results in decreased expression of FAM120A mRNA	CTD	PMID:28628672
Fam120a	Rat	bisphenol F	multiple interactions	EXP		6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in increased expression of FAM120A mRNA	CTD	PMID:36041667
Fam120a	Rat	butanal	decreases expression	ISO	FAM120A (Homo sapiens)	6480464	butyraldehyde results in decreased expression of FAM120A mRNA	CTD	PMID:26079696
Fam120a	Rat	cadmium dichloride	decreases expression	EXP		6480464	Cadmium Chloride results in decreased expression of FAM120A mRNA	CTD	PMID:33453195
Fam120a	Rat	cadmium dichloride	increases expression	ISO	FAM120A (Homo sapiens)	6480464	Cadmium Chloride results in increased expression of FAM120A mRNA	CTD	PMID:26472689
Fam120a	Rat	caffeine	affects phosphorylation	ISO	FAM120A (Homo sapiens)	6480464	Caffeine affects the phosphorylation of FAM120A protein	CTD	PMID:35688186
Fam120a	Rat	cisplatin	decreases expression	ISO	FAM120A (Homo sapiens)	6480464	Cisplatin results in decreased expression of FAM120A mRNA	CTD	PMID:27594783
Fam120a	Rat	cobalt dichloride	decreases expression	ISO	FAM120A (Homo sapiens)	6480464	cobaltous chloride results in decreased expression of FAM120A mRNA	CTD	PMID:19320972
Fam120a	Rat	crocidolite asbestos	decreases expression	ISO	FAM120A (Homo sapiens)	6480464	Asbestos and Crocidolite results in decreased expression of FAM120A mRNA	CTD	PMID:29523930
Fam120a	Rat	dexamethasone	multiple interactions	ISO	FAM120A (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in decreased expression of FAM120A mRNA more ...	CTD	PMID:28628672
Fam120a	Rat	Dibutyl phosphate	affects expression	ISO	FAM120A (Homo sapiens)	6480464	di-n-butylphosphoric acid affects the expression of FAM120A mRNA	CTD	PMID:37042841
Fam120a	Rat	dicrotophos	increases expression	ISO	FAM120A (Homo sapiens)	6480464	dicrotophos results in increased expression of FAM120A mRNA	CTD	PMID:28302478
Fam120a	Rat	dorsomorphin	multiple interactions	ISO	FAM120A (Homo sapiens)	6480464	[NOG protein co-treated with methylmercuric chloride co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of FAM120A mRNA	CTD	PMID:27188386
Fam120a	Rat	doxorubicin	decreases expression	ISO	FAM120A (Homo sapiens)	6480464	Doxorubicin results in decreased expression of FAM120A mRNA	CTD	PMID:29803840
Fam120a	Rat	enzyme inhibitor	multiple interactions	ISO	FAM120A (Homo sapiens)	6480464	[Enzyme Inhibitors results in decreased activity of OGA protein] which results in increased O-linked glycosylation of FAM120A protein	CTD	PMID:23301498
Fam120a	Rat	ethanol	affects splicing	ISO	Fam120a (Mus musculus)	6480464	Ethanol affects the splicing of FAM120A mRNA	CTD	PMID:30319688
Fam120a	Rat	folic acid	decreases expression	ISO	Fam120a (Mus musculus)	6480464	Folic Acid results in decreased expression of FAM120A mRNA	CTD	PMID:25629700
Fam120a	Rat	folic acid	multiple interactions	ISO	Fam120a (Mus musculus)	6480464	[1 and 2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of FAM120A mRNA	CTD	PMID:22206623
Fam120a	Rat	formaldehyde	decreases expression	ISO	FAM120A (Homo sapiens)	6480464	Formaldehyde results in decreased expression of FAM120A mRNA	CTD	PMID:23649840
Fam120a	Rat	gentamycin	decreases expression	EXP		6480464	Gentamicins results in decreased expression of FAM120A mRNA	CTD	PMID:33387578
Fam120a	Rat	hexadecanoic acid	decreases phosphorylation	ISO	FAM120A (Homo sapiens)	6480464	Palmitic Acid results in decreased phosphorylation of FAM120A protein	CTD	PMID:28073184
Fam120a	Rat	hydralazine	multiple interactions	ISO	FAM120A (Homo sapiens)	6480464	[Hydralazine co-treated with Valproic Acid] results in increased expression of FAM120A mRNA	CTD	PMID:17183730
Fam120a	Rat	hydrogen peroxide	increases expression	ISO	FAM120A (Homo sapiens)	6480464	Hydrogen Peroxide results in increased expression of FAM120A mRNA	CTD	PMID:18951874
Fam120a	Rat	indometacin	multiple interactions	ISO	FAM120A (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in decreased expression of FAM120A mRNA more ...	CTD	PMID:28628672
Fam120a	Rat	ivermectin	decreases expression	ISO	FAM120A (Homo sapiens)	6480464	Ivermectin results in decreased expression of FAM120A protein	CTD	PMID:32959892
Fam120a	Rat	methidathion	increases expression	ISO	Fam120a (Mus musculus)	6480464	methidathion results in increased expression of FAM120A mRNA	CTD	PMID:34813904
Fam120a	Rat	methyl methanesulfonate	decreases expression	ISO	FAM120A (Homo sapiens)	6480464	Methyl Methanesulfonate results in decreased expression of FAM120A mRNA	CTD	PMID:23649840
Fam120a	Rat	methylmercury chloride	increases expression	ISO	FAM120A (Homo sapiens)	6480464	methylmercuric chloride results in increased expression of FAM120A mRNA	CTD	PMID:26272509
Fam120a	Rat	methylmercury chloride	multiple interactions	ISO	FAM120A (Homo sapiens)	6480464	[NOG protein co-treated with methylmercuric chloride co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of FAM120A mRNA	CTD	PMID:27188386
Fam120a	Rat	nicotine	decreases expression	ISO	Fam120a (Mus musculus)	6480464	Nicotine results in decreased expression of FAM120A mRNA	CTD	PMID:17997037
Fam120a	Rat	ozone	multiple interactions	ISO	FAM120A (Homo sapiens)	6480464	[Air Pollutants results in increased abundance of Ozone] which affects the expression of FAM120A mRNA	CTD	PMID:35430440
Fam120a	Rat	paracetamol	decreases expression	ISO	FAM120A (Homo sapiens)	6480464	Acetaminophen results in decreased expression of FAM120A mRNA	CTD	PMID:21420995 and PMID:22230336
Fam120a	Rat	SB 431542	multiple interactions	ISO	FAM120A (Homo sapiens)	6480464	[NOG protein co-treated with methylmercuric chloride co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of FAM120A mRNA	CTD	PMID:27188386
Fam120a	Rat	sodium arsenite	increases expression	ISO	FAM120A (Homo sapiens)	6480464	sodium arsenite results in increased expression of FAM120A mRNA	CTD	PMID:38568856
Fam120a	Rat	sodium chloride	multiple interactions	ISO	FAM120A (Homo sapiens)	6480464	[Sodium Chloride co-treated with pyrogallol 1 and 3-dimethyl ether] results in increased expression of and affects the localization of FAM120A protein	CTD	PMID:38598786
Fam120a	Rat	sunitinib	decreases expression	ISO	FAM120A (Homo sapiens)	6480464	Sunitinib results in decreased expression of FAM120A mRNA	CTD	PMID:31533062
Fam120a	Rat	thapsigargin	decreases expression	ISO	Fam120a (Mus musculus)	6480464	Thapsigargin results in decreased expression of FAM120A protein	CTD	PMID:24648495
Fam120a	Rat	thiram	increases expression	ISO	FAM120A (Homo sapiens)	6480464	Thiram results in increased expression of FAM120A mRNA	CTD	PMID:38568856
Fam120a	Rat	trichloroethene	decreases expression	EXP		6480464	Trichloroethylene results in decreased expression of FAM120A mRNA	CTD	PMID:33387578
Fam120a	Rat	trichostatin A	increases expression	ISO	FAM120A (Homo sapiens)	6480464	trichostatin A results in increased expression of FAM120A mRNA	CTD	PMID:24935251
Fam120a	Rat	triphenyl phosphate	affects expression	ISO	FAM120A (Homo sapiens)	6480464	triphenyl phosphate affects the expression of FAM120A mRNA	CTD	PMID:37042841
Fam120a	Rat	tungsten	decreases expression	ISO	Fam120a (Mus musculus)	6480464	Tungsten results in decreased expression of FAM120A mRNA	CTD	PMID:30912803
Fam120a	Rat	valproic acid	multiple interactions	ISO	FAM120A (Homo sapiens)	6480464	[Hydralazine co-treated with Valproic Acid] results in increased expression of FAM120A mRNA	CTD	PMID:17183730
Fam120a	Rat	valproic acid	decreases methylation	ISO	FAM120A (Homo sapiens)	6480464	Valproic Acid results in decreased methylation of FAM120A gene	CTD	PMID:29154799
Fam120a	Rat	valproic acid	increases expression	ISO	FAM120A (Homo sapiens)	6480464	Valproic Acid results in increased expression of FAM120A mRNA	CTD	PMID:23179753
Fam120a	Rat	vinclozolin	decreases expression	EXP		6480464	vinclozolin results in decreased expression of FAM120A mRNA	CTD	PMID:23034163

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fam120a	Rat	cytosol	located_in	ISO	FAM120A (Homo sapiens) more ...	1624291		RGD	GO_REF:0000052
Fam120a	Rat	cytosol	located_in	IEA	UniProtKB:Q9NZB2 and ensembl:ENSP00000277165	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Fam120a	Rat	nucleus	is_active_in	IBA	MGI:1914794 and PANTHER:PTN000410110	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fam120a	Rat	protein binding	enables	ISO	FAM120A (Homo sapiens)	1624291	UniProtKB:Q92900 more ...	RGD	PMID:33961781 and PMID:35271311

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:19946888	PMID:22658674	PMID:22681889	PMID:24625528	PMID:28755400

Fam120a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	15,890,151 - 15,981,337 (+)	NCBI		GRCr8
mRatBN7.2	17	15,684,233 - 15,774,964 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	15,684,233 - 15,774,964 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	15,570,799 - 15,654,196 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	17,175,834 - 17,259,232 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	15,497,553 - 15,580,950 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	16,106,101 - 16,196,054 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	16,106,137 - 16,194,478 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	18,168,308 - 18,257,857 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	21,673,373 - 21,764,457 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	21,630,559 - 21,764,451 (+)	NCBI
Celera	17	15,413,330 - 15,503,374 (+)	NCBI		Celera
Cytogenetic Map	17	p14	NCBI

FAM120A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	93,451,685 - 93,566,112 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	93,451,685 - 93,566,112 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	96,213,967 - 96,328,394 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	95,253,994 - 95,368,218 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	93,293,727 - 93,407,946	NCBI
Celera	9	66,655,621 - 66,769,844 (+)	NCBI		Celera
Cytogenetic Map	9	q22.31	NCBI
HuRef	9	65,891,442 - 66,004,918 (+)	NCBI		HuRef
CHM1_1	9	96,361,189 - 96,475,409 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	105,619,097 - 105,733,519 (+)	NCBI		T2T-CHM13v2.0

Fam120a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	49,032,692 - 49,121,754 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	49,032,695 - 49,121,493 (-)	Ensembl		GRCm39 Ensembl
GRCm38	13	48,879,216 - 48,968,060 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	48,879,219 - 48,968,017 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	48,974,585 - 49,063,197 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	48,892,733 - 48,979,765 (-)	NCBI		MGSCv36	mm8
Celera	13	49,970,064 - 50,058,536 (-)	NCBI		Celera
Cytogenetic Map	13	A5	NCBI
cM Map	13	25.0	NCBI

Fam120a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955515	4,531,586 - 4,629,569 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955515	4,531,586 - 4,628,646 (-)	NCBI	ChiLan1.0	ChiLan1.0

FAM120A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	45,861,657 - 45,975,643 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	45,864,039 - 45,978,184 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	64,575,501 - 64,689,649 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

FAM120A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	98,264,680 - 98,336,761 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	98,265,855 - 98,353,296 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	98,660,089 - 98,747,406 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	98,882,404 - 98,969,686 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	98,883,782 - 98,969,662 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	98,496,292 - 98,583,580 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	98,232,192 - 98,319,495 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	98,987,128 - 99,074,444 (-)	NCBI		UU_Cfam_GSD_1.0

Fam120a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404944	8,532,251 - 8,633,666 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	2,748,720 - 2,850,283 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	2,748,726 - 2,850,089 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FAM120A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	42,861,410 - 42,974,866 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	42,861,594 - 42,974,874 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	44,241,918 - 44,330,942 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LOC103219772
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	103,829,452 - 103,945,026 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	103,829,680 - 103,945,419 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	92,129,572 - 92,245,134 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fam120a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624868	2,996,903 - 3,103,279 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624868	2,996,907 - 3,103,289 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Fam120a
467 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	223
Count of miRNA genes:	141
Interacting mature miRNAs:	180
Transcripts:	ENSRNOT00000060568
Prediction methods:	Miranda, Pita, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354581	Bp247	Blood pressure QTL 247	4.5		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	17	1	69599340	Rat
2300002	Iddm36	Insulin dependent diabetes mellitus QTL 36	1.98		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	17	9991286	40540197	Rat
631499	Stl1	Serum triglyceride level QTL 1	3.6		blood triglyceride amount (VT:0002644)	blood triglyceride level (CMO:0000118)	17	3271398	27389946	Rat
2293664	Bmd28	Bone mineral density QTL 28	5.1	0.0001	femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	17	4354487	27028127	Rat
1300123	Bp194	Blood pressure QTL 194	2.82		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	17	2115149	34551001	Rat
1582224	Epfw4	Epididymal fat weight QTL 4	3.5	0.0058	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	17	9201365	23653323	Rat
1582225	Bw67	Body weight QTL 67	6.2	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	17	9201365	23653323	Rat
1582226	Bw64	Body weight QTL 64	4.2	0.0017	body mass (VT:0001259)	body weight (CMO:0000012)	17	9201365	23653323	Rat
1354651	Lmblg2	Limb length QTL 2	6		tibia length (VT:0004357)	tibia length (CMO:0000450)	17	4299130	69599340	Rat
10401807	Kidm52	Kidney mass QTL 52			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	17	1	31701463	Rat
10054088	Scort28	Serum corticosterone level QTL 28	2.04	0.0102	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	4528038	49528038	Rat
1354630	Cm34	Cardiac mass QTL 34	8.7		heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	17	4299130	69599340	Rat
1582208	Kidm32	Kidney mass QTL 32	3.9	0.0018	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	17	9201365	23653323	Rat
1354638	Insul1	Insulin level QTL 1	4.8		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	17	4299130	69599340	Rat
1549900	Iddm20	Insulin dependent diabetes mellitus QTL 20	3.7		pancreas integrity trait (VT:0010560)	percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)	17	13986773	21975515	Rat
1331720	Rf43	Renal function QTL 43	2.881		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	17	15330613	23017269	Rat
1354613	Kidm14	Kidney mass QTL 14	6.2		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	17	4299130	35837242	Rat
1331765	Hrtrt15	Heart rate QTL 15	4.094		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	17	15330613	55836425	Rat
2324619	Coatc4	Coat color QTL 4		0.001	coat/hair pigmentation trait (VT:0010463)	pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)	17	4299130	21293263	Rat
2303627	Vencon8	Ventilatory control QTL 8		0.001	respiration trait (VT:0001943)	tidal volume (CMO:0000222)	17	4528038	49528038	Rat
70184	BpQTLcluster14	Blood pressure QTL cluster 14	3.38		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	17	1	31990913	Rat
1581553	Pur14	Proteinuria QTL 14	5.3	0.0001	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	17	7979968	16317111	Rat
2303561	Bw91	Body weight QTL 91	2		body mass (VT:0001259)	body weight (CMO:0000012)	17	8868462	53868462	Rat
1582258	Bw76	Body weight QTL 76	4.6	0.0005	body mass (VT:0001259)	body weight (CMO:0000012)	17	9201365	23653323	Rat
631207	Niddm41	Non-insulin dependent diabetes mellitus QTL 41			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	17	1	37830672	Rat
1582199	Insul5	Insulin level QTL 5	3.4	0.0119	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	17	9201365	23653323	Rat
1354596	Bw32	Body weight QTL 32	4.5		body mass (VT:0001259)	body weight (CMO:0000012)	17	4299130	60781592	Rat
1354662	Rf49	Renal function QTL 49	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	17	1	69599340	Rat
2293648	Bmd31	Bone mineral density QTL 31	4.5	0.0001	femur size trait (VT:1000369)	femoral neck cortical cross-sectional area (CMO:0001702)	17	4354487	27028127	Rat
1354658	Spl8	Serum phospholipid level QTL 8	3.8		blood VLDL phospholipid amount (VT:0010507)	blood very low density lipoprotein phospholipid level (CMO:0001571)	17	1	60781592	Rat
1641902	Colcr7	Colorectal carcinoma resistance QTL 7	3.35	0.0044	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	17	2115149	21881669	Rat
1582241	Bw70	Body weight QTL 70	4.6	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	17	9201365	23653323	Rat
1582245	Bw73	Body weight QTL 73	4.6	0.0004	body mass (VT:0001259)	body weight (CMO:0000012)	17	9201365	23653323	Rat
9590316	Scort21	Serum corticosterone level QTL 21	4.75	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	17	1	22871563	Rat

D3S3819

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	15,773,290 - 15,773,465 (+)	MAPPER	mRatBN7.2
mRatBN7.2	1	65,408,216 - 65,408,391 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	63,834,653 - 63,834,827	NCBI	Rnor6.0
Rnor_6.0	17	16,194,381 - 16,194,555	NCBI	Rnor6.0
Rnor_5.0	17	18,256,184 - 18,256,358	UniSTS	Rnor5.0
Rnor_5.0	1	62,826,908 - 62,827,082	UniSTS	Rnor5.0
RGSC_v3.4	1	63,721,153 - 63,721,327	UniSTS	RGSC3.4
RGSC_v3.4	17	21,762,784 - 21,762,958	UniSTS	RGSC3.4
Celera	17	15,501,822 - 15,501,996	UniSTS
Celera	1	63,135,152 - 63,135,326	UniSTS
Cytogenetic Map	1	q12	UniSTS
Cytogenetic Map	17	p14	UniSTS

BE102358

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	15,683,236 - 15,683,395 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	16,104,949 - 16,105,107	NCBI	Rnor6.0
Rnor_5.0	17	18,167,156 - 18,167,314	UniSTS	Rnor5.0
RGSC_v3.4	17	21,672,505 - 21,672,663	UniSTS	RGSC3.4
Celera	17	15,412,639 - 15,412,797	UniSTS
RH 3.4 Map	17	180.0	UniSTS
Cytogenetic Map	17	p14	UniSTS

RH138608

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	15,715,165 - 15,715,345 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	16,137,086 - 16,137,265	NCBI	Rnor6.0
Rnor_5.0	17	18,199,230 - 18,199,409	UniSTS	Rnor5.0
RGSC_v3.4	17	21,704,033 - 21,704,212	UniSTS	RGSC3.4
Celera	17	15,444,113 - 15,444,292	UniSTS
RH 3.4 Map	17	177.6	UniSTS
Cytogenetic Map	17	p14	UniSTS

RH142010

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	15,744,202 - 15,744,400 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	16,165,315 - 16,165,512	NCBI	Rnor6.0
Rnor_5.0	17	18,227,118 - 18,227,315	UniSTS	Rnor5.0
RGSC_v3.4	17	21,732,659 - 21,732,856	UniSTS	RGSC3.4
Celera	17	15,472,731 - 15,472,928	UniSTS
RH 3.4 Map	17	181.1	UniSTS
Cytogenetic Map	17	p14	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001191816	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276150	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063276151	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CA339278	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473977	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EV763908	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FN800814	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FN801796	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227566	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227617	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000060568 ⟹ ENSRNOP00000057305

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	17	15,684,233 - 15,774,964 (+)	Ensembl
Rnor_6.0 Ensembl	17	16,106,137 - 16,194,478 (+)	Ensembl

RefSeq Acc Id:

NM_001191816 ⟹ NP_001178745

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	15,890,611 - 15,981,337 (+)	NCBI
mRatBN7.2	17	15,684,233 - 15,774,964 (+)	NCBI
Rnor_6.0	17	16,106,101 - 16,196,054 (+)	NCBI
Rnor_5.0	17	18,168,308 - 18,257,857 (+)	NCBI
Celera	17	15,413,330 - 15,503,374 (+)	NCBI

Sequence:

show sequence

CGCGCCCGCCGGCCGCGCCACGGCCCCGCCGCCCCCCGCCCCGCCGCCGCCGGCCCCGCCGCCCGCGCGCGCCCGCCTCGCCGCCGCCATGGGCGTGCAGGGCTTCCAGGACTACATCGAGAAGCACT
GTCCGAGCGCCGTGGTGCCGGTGGAGCTGCAGAAGCTGGCCCGGGGCAGCCTGGTGGGCGGCGGGCGGCAGCGGCCCCCGCAGACCCCGCTTCGCCTGCTGGTGGATGCCGACAACTGCCTGCATCGC
CTGTACGGTGGCTTCTACACCGACTGGGTGAGCGGCGGCCAGTGGAACCACATGCTCGGCTACCTGGCGGCTCTGGCCAAGGCCTGCTTCGGAGGCAACATCGAGCTCTTCGTCTTCTTCAACGGCGC
GCTCGAGAAGGCCCGGCTGCACGAGTGGGTCAAGCGGCAGGGTAACGAGCGCCAGACAGCGCAGCAGATCGTCAGCCATGTCCAGAACAAGGGCACGCCACCGCCCAAGGTCTGGTTCCTGCCTCCGG
TCTGCATGGCCCACTGCATCCGCCTGGCGCTCATCCGCTTCCACGTCAAGGTTGCACAGAGCATTGAGGATCATCATCAAGAAGTGATTGGCTTCTGCAGAGAGAATGGTTTCCATGGCTTGGTGGCG
TATGACTCTGATTATGCACTGTGCAACATCCCCTACTACTTCAGTGCCCATGCCCTGAAACTGAGCCGCAATGGGAAGAGTCTCACCACAAGCCAATATCTGATGCACGAGGTTGCCAAGCAACTGGA
CCTGAACCCAAACCGTTTTCCTATTTTTGCTGCTCTGTTAGGAAATCACATACTACCTGACGAGGATCTGGCTTCCTTTCATTGGAGTTTACTTGGTCCAGAGCATCCGCTCGCCTCACTGAAGGTCC
GAGCTCACCAGCTGGTCTTGCCACCATGTGATGTAGTGATCAAAGCTGTAGCTGATTATGTCCGCAACATCCATGACACGTCTGACCTGGATGCCATAGCTAAAGATGTTTTCCAGCATTCACAGTCT
AGAACAGATGACAAAGTCATTCGATTTAAGAGAGCAGTTGGATATTACTCAGCAACTAGCAAGCCTATGCCATTTCACCCACCACATTACTTACCCCGACCAAATCCATTTGGAATGCCTGGGATGGT
GCCACCATATGTTCCCCCTCAGATGCTCAACATTCCACAGACTTCTCTGCAAGCAAAGCCCGCGGTCCCACAGGTGCCCAGCCCAGGGGGCACCCCAGGCCAGGCTCCATACCCATACAGCCTCCCTG
AGCCTGCCCTCGCCCTGGACTCTAGCGGGAAGAACCTGACAGAGCAGAACAGCTACAGCAACATTCCTCACGAGGGGAAGCACACACCGCTGTATGAGCGCTCCTCGCCCATCAACCTGGCCCAGAGC
GGCAGCCCCAATCACGTGGATTCCGCCTACTTCCCTGGCTCGTCTACCTCGTCCTCATCAGACAACGATGAGGGCAGTGGAGGGGCAACCAACCACATCAGCGGGAACAAGATTGGCTGGGAGAAGAC
AGGAAGCCATGCAGAGCCACTGGCACGGGGAGACCCAGGAGACCAAGTAAAGGTAGAAGGTTCATCCACTGCCTCTTCGGGAAGCCAGCTAGCTGAAGGCAAAGGGAGCCACATGGGCACTGTTCAGC
CAATCCCGTGCCTCCTGTCAATGCCCACCAGGAACCACATGGATATCACCACACCTCCCTTGCCCCCCGTTGCACCTGAGGTGCTGAGAGTGGCTGAGCACAGACACAAGAAGGGACTGATGTACCCC
TACATCTTCCACGTCCTGACAAAGGGTGAAATCAAAATTGCTGTTTCTATTGAAGATGAAGCCAACAAAGACCTGCCTCCGGCCGCCCTGCTCTATAGGCCAGTTCGTCAGTATGTTTACGGAGTCCT
GTTTAGTTTGGCAGAAAGCAGAAAGAAAACTGAGAGACTTGCTTTTAGAAAGAACAGACTTCCACCAGAATTCTCGCCACTGATCATTAAGGAATGGGCAGCTTACAAGGGGAAGTCTCCTCAGACCC
CGGAACTAGTGGAAGCACTGGCCTTCCGGGAGTGGACCTGCCCCAACCTGAAGAGGCTTTGGCTGGGCAAGGCGGTGGAGGACAAGAACCGCCGGATGAGGGCCTTCCTGGCCTGCATGAGGTCTGAT
ACCCCAGCCATGCTCAACCCTGCCAATGTGCCCACTCACCTCATGGTGCTCTGCTGTGTCTTACGGTATATGGTGCAGTGGCCCGGAGCTCGCATTCTGCGGCGTCAGGAGCTGGATGCCTTCCTGGC
TCAGGCATTGTCTCCCAAACTCTATGAGCCGGACCAGCTGCAGGAACTCAAGATTGAGAACTTAGACCCCCGAGGAATTCAGCTGTCAGCTCTCTTCATGAGCGGAGTAGACATGGCACTGTTTGCCA
ATGACGCGTGTGGGCAGCCCATACCCTGGGAACACTGTTGTCCTTGGATGTATTTCGATGGGAAGCTCTTCCAGTCCAAACTTCTTAAAGCCAGCCGGGAAAAGACCCCACTCATCGACCTCTGTGAT
GGTCAGGCTGAGCAGGCTGCCAAGGTTGAAAAGATGCGCCAGAGTATCCTGGAGGGGCTCAACTTCTCCCGGCAAAACCACCCACTCCCCTTCCCACCGCCTCCTGCTCTGCCCTTCTACCCAGCTTC
TGTATATCCTCGGCACTTTGGGCCGGTCCCACCCTCACAGGGCAGGGGCAGGGGCTTTGCAGGAGGTCTGTGGCTCTTGGGAGGCCATTATGGGGAAACTGTAGCAACAGGCCCTTACCGTGCCTTCC
GGGTGACAGCAGCATCGGGACACTGTGGAGCCTTCTCAGGCAGTGACAGCAACAGGACTAGCAAGTCCCAGGGCGGAGTCCAGCCTATTCCTTCTCAGGGAGGGAAGCTAGAAATAGCTGGCACGGTG
GTCGGCCACTGGGCTGGGAGCAGGCGGGGCCGTGGGGGCCGAGGGCCCTTCCCTCTGCAGGTGGTGTCTGTGGGAGGACCAGCAAGAGGGCGTCCAAGGGGTGTTATTTCCACTCCTGTGATTAGAAC
GTTTGGAAGAGGTGGAAGGTACTACGGCAGAGGCTATAAAAGCCAGGGAGCAATTCAGGGCAGACCTCCTTATGCTGCTTCAGCAGAAGAAGTGGCCAAAGAACTGAAATCGAAATCTGGGGAATCCA
AGTCCTCTGCTGTGTCCTCAGAAGGGTCCCTGGCTGAAAACGGAGTGATGGCCGAGGAGAAGCCAGTGCCCCAACTTAATGGGAGCACGGCTGACACCAGGGCCCCCAGCCACTCTGAAAGTGCCTTG
AACAATGACTCTAAAACGTGCAATACAAATCCTCACTTAAATGCACTAAGTACAGACAGCGCCTGCCGCAGGGAGGCTGCTCTGGAGGCAGCTGTCTTAAATAAAGAAGAGTGAACTTATTTTTATAG
AGGGTGAAGGATGCTGGAAGGGTAAGGATTCAGGAATATCTGGAGAGAAAGAGAGCCTGCAGTTATGTACATTTTGTCCTTTCCGTAAGAGAAAATGAGGACTGTGGAAATTCAGATCCCTCTTTGAT
ATCAGAGATTTAAACAACACATTCTTTTTTTAGTTTTAACCAGTTGTAGTCAAAATGCTACAATAAAACAAAACGAGAGAGAGAAAATGAAGAGCATTTGACTCCCGCACTTAAAAATGAAGCACACA
AAGTTTAAACTGGTTACGACGACAAAAGCCTACAGTTGTGTTTCTTGAACTATAAAGAAAACAAATTTTGGCAGTGTTTAAGTATATATAGCTTAAAATATAATTTTTAGCATTTGGCACCATATGTA
TGCCATTATATTTGATTTTGCATTACTGTTTCACAATGAAGCTTTGTTTTAAGGCTTTGATTTATGATTATGAAAGAAATAAGGCACAACCACAGTTTTTCTTTCTTACTTAAATTTCATCACTGTTG
ATGTGGTTCTTTTGTGTTAAAAAAGTGCAACTATCGAAACTAAAAAAAATTATAGAGTAAACTGCTGTTGTGCTGATTTTGAATACACAGTACATCATACATACTTTACAAGCAAGTTCAATGGAGAT
AAAGTTGAAATCATAGAAGATGCAAATGACCTTTCAAAGTCAACACAATGTGTTCTGAAACCTCGTGACTAATACCATGCACCTGTGATCAGTGAGCTACGTGGTTTTGAATCGGACGTAGACCATTA
GTGCTACTACTTGAGCTAAACTTCTGCATGGTTCATAATTTTTAAAGTGTGTAGTTAATATTATGCATGTTATTGTCTTTTCTTCCATTCTTACCAGTACGTGCCCATTTGCAAAACGAAATGCTAAT
AATCAGTAATAGTCCTATGAGGATGTTAACTCTGTTTAGTCATTGACTGATCTTGCTCTAACCCCAAAACTTTGTGATTATTGACCTCTGTTGCATTTATTCTAAACCCCCCAAAATGACCTAGCCGT
TTGGAGTATCAACATTACCCTGGTGTACTCACTGCTGTTGCAGGATTGTTCTCTGTTGCTGTTTATGCCTTCATATTCATATTAGCCAAATATGAAATTCTGTAAAGAAGAACCCCCTATGATCTTAA
AAAACAAACACCCCTCCCCTTCTGTAGCAGGAAACAAATTGCTTGTTCTTGAGAAGTTCCCATCAGGAATTTAGTAGAAGCAGGTATACTTCTATCATTTTGATGTTTTGTTACTGTTTCCAAACAAT
GTACTTTGAATCAGAATCACTTCTTACGTTTCATATACTTCCGATGCTCTTCATCACATTAGTGATCAGAAATGAGGTGTAACTCCCCAACCCCTGCCCGCGAGAGCTAAGTAGGATCTTACTGTAAG
TTGAAGGGACTTCCGCCCTAACTCATGGATTGTGAAGAATGAACTGCTGTTGGGTCTGATTGACTGTTGATGGATTGTGGTGTGGCGTATCCAGAGGCTATTGAATGCAACTTACAATGCTTAATAAA
AATCTTTATTCTTTTAGTATAAAGTA

hide sequence

RefSeq Acc Id:

XM_063276150 ⟹ XP_063132220

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	15,901,431 - 15,981,334 (+)	NCBI

RefSeq Acc Id:

XM_063276151 ⟹ XP_063132221

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	17	15,890,151 - 15,964,511 (+)	NCBI


Protein RefSeqs	NP_001178745	(Get FASTA)	NCBI Sequence Viewer
	XP_063132220	(Get FASTA)	NCBI Sequence Viewer
	XP_063132221	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL98132	(Get FASTA)	NCBI Sequence Viewer
	EDL98133	(Get FASTA)	NCBI Sequence Viewer
	EDL98134	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000057305
	ENSRNOP00000057305.4

RefSeq Acc Id:

NP_001178745 ⟸ NM_001191816

- UniProtKB:

D4AB03 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGVQGFQDYIEKHCPSAVVPVELQKLARGSLVGGGRQRPPQTPLRLLVDADNCLHRLYGGFYTDWVSGGQWNHMLGYLAALAKACFGGNIELFVFFNGALEKARLHEWVKRQGNERQTAQQIVSHVQN
KGTPPPKVWFLPPVCMAHCIRLALIRFHVKVAQSIEDHHQEVIGFCRENGFHGLVAYDSDYALCNIPYYFSAHALKLSRNGKSLTTSQYLMHEVAKQLDLNPNRFPIFAALLGNHILPDEDLASFHWS
LLGPEHPLASLKVRAHQLVLPPCDVVIKAVADYVRNIHDTSDLDAIAKDVFQHSQSRTDDKVIRFKRAVGYYSATSKPMPFHPPHYLPRPNPFGMPGMVPPYVPPQMLNIPQTSLQAKPAVPQVPSPG
GTPGQAPYPYSLPEPALALDSSGKNLTEQNSYSNIPHEGKHTPLYERSSPINLAQSGSPNHVDSAYFPGSSTSSSSDNDEGSGGATNHISGNKIGWEKTGSHAEPLARGDPGDQVKVEGSSTASSGSQ
LAEGKGSHMGTVQPIPCLLSMPTRNHMDITTPPLPPVAPEVLRVAEHRHKKGLMYPYIFHVLTKGEIKIAVSIEDEANKDLPPAALLYRPVRQYVYGVLFSLAESRKKTERLAFRKNRLPPEFSPLII
KEWAAYKGKSPQTPELVEALAFREWTCPNLKRLWLGKAVEDKNRRMRAFLACMRSDTPAMLNPANVPTHLMVLCCVLRYMVQWPGARILRRQELDAFLAQALSPKLYEPDQLQELKIENLDPRGIQLS
ALFMSGVDMALFANDACGQPIPWEHCCPWMYFDGKLFQSKLLKASREKTPLIDLCDGQAEQAAKVEKMRQSILEGLNFSRQNHPLPFPPPPALPFYPASVYPRHFGPVPPSQGRGRGFAGGLWLLGGH
YGETVATGPYRAFRVTAASGHCGAFSGSDSNRTSKSQGGVQPIPSQGGKLEIAGTVVGHWAGSRRGRGGRGPFPLQVVSVGGPARGRPRGVISTPVIRTFGRGGRYYGRGYKSQGAIQGRPPYAASAE
EVAKELKSKSGESKSSAVSSEGSLAENGVMAEEKPVPQLNGSTADTRAPSHSESALNNDSKTCNTNPHLNALSTDSACRREAALEAAVLNKEE

hide sequence

Ensembl Acc Id:

ENSRNOP00000057305 ⟸ ENSRNOT00000060568

RefSeq Acc Id:	XP_063132221 ⟸ XM_063276151
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063132220 ⟸ XM_063276150
- Peptide Label:	isoform X1

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4AB03-F1-model_v2	AlphaFold	D4AB03	1-1115	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13700358

Promoter ID:

EPDNEW_R10882

Type:

single initiation site

Name:

Fam120a_1

Description:

family with sequence similarity 120A

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	17	16,106,110 - 16,106,170	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-9985	BioCyc
Ensembl Genes	ENSRNOG00000016779	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000060568	ENTREZGENE
	ENSRNOT00000060568.5	UniProtKB/TrEMBL
Gene3D-CATH	5'-nuclease	UniProtKB/TrEMBL
InterPro	Coact_PPARg	UniProtKB/TrEMBL
	PIN_domain-like	UniProtKB/TrEMBL
NCBI Gene	291019	ENTREZGENE
PANTHER	CONSTITUTIVE COACTIVATOR OF PPAR-GAMMA-LIKE PROTEIN 1	UniProtKB/TrEMBL
	PTHR15976	UniProtKB/TrEMBL
PhenoGen	Fam120a	PhenoGen
RatGTEx	ENSRNOG00000016779	RatGTEx
Superfamily-SCOP	SSF88723	UniProtKB/TrEMBL
UniProt	D4AB03	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-07-06	Fam120a	family with sequence similarity 120 member A	Fam120a	family with sequence similarity 120A	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-05-24	Fam120a	family with sequence similarity 120A	LOC679485	similar to Protein CXorf17 homolog	Data merged from RGD:1588281	1643240	APPROVED
2008-03-07	Fam120a	family with sequence similarity 120A	RGD1306643_predicted	similar to Protein C9orf10 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-19	LOC679485	similar to Protein CXorf17 homolog			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-01-20	RGD1306643_predicted	similar to Protein C9orf10 (predicted)	LOC291019_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC291019_predicted	similar to Protein C9orf10 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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