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Gene: Mideas (mitotic deacetylase associated SANT domain protein) Rattus norvegicus

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Symbol:

Mideas

Name:

mitotic deacetylase associated SANT domain protein

RGD ID:

1306119

Description:

Predicted to enable transcription corepressor activity. Predicted to be involved in negative regulation of DNA-templated transcription and regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Predicted to be part of histone deacetylase complex and transcription regulator complex. Orthologous to human MIDEAS (mitotic deacetylase associated SANT domain protein); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cadmium dichloride.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

ELM2 and Myb/SANT domain containing 1; ELM2 and Myb/SANT-like domain containing 1; ELM2 and SANT domain-containing protein 1; Elmsan1; hypothetical protein LOC314306; LOC314306; RGD1306119; similar to transcriptional regulating protein 132; uncharacterized protein LOC314306

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	109,519,011 - 109,585,631 (-)	NCBI		GRCr8
mRatBN7.2	6	103,784,779 - 103,854,470 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	103,787,873 - 103,829,178 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	103,949,668 - 103,990,970 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	104,248,755 - 104,290,056 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	103,618,341 - 103,659,643 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	107,633,762 - 107,703,462 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	107,633,716 - 107,678,156 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	117,855,896 - 117,902,538 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	108,204,240 - 108,245,370 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	108,207,831 - 108,248,832 (-)	NCBI
Celera	6	101,616,790 - 101,658,151 (-)	NCBI		Celera
Cytogenetic Map	6	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Mideas	Rat	intellectual disability		ISO	MIDEAS (Homo sapiens)	8554872	ClinVar Annotator: match by term: Intellectual disability and mild	ClinVar
Mideas	Rat	primary ciliary dyskinesia 16		ISO	MIDEAS (Homo sapiens)	8554872	ClinVar Annotator: match by term: Primary ciliary dyskinesia 16	ClinVar	PMID:21496787 and PMID:28492532

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Mideas	Rat	17beta-estradiol	increases expression	ISO	MIDEAS (Homo sapiens)	6480464	Estradiol results in increased expression of MIDEAS mRNA	CTD	PMID:23019147
Mideas	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	EXP		6480464	Tetrachlorodibenzodioxin affects the expression of MIDEAS mRNA	CTD	PMID:22298810 and PMID:34747641
Mideas	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of MIDEAS mRNA	CTD	PMID:33387578
Mideas	Rat	3-methylcholanthrene	multiple interactions	ISO	MIDEAS (Homo sapiens)	6480464	Methylcholanthrene promotes the reaction [AHR protein binds to MIDEAS promoter]	CTD	PMID:20348232
Mideas	Rat	4,4'-sulfonyldiphenol	affects methylation	ISO	Mideas (Mus musculus)	6480464	bisphenol S affects the methylation of MIDEAS gene	CTD	PMID:31683443
Mideas	Rat	antirheumatic drug	increases expression	ISO	MIDEAS (Homo sapiens)	6480464	Antirheumatic Agents results in increased expression of MIDEAS mRNA	CTD	PMID:24449571
Mideas	Rat	aristolochic acid A	decreases expression	ISO	MIDEAS (Homo sapiens)	6480464	aristolochic acid I results in decreased expression of MIDEAS mRNA	CTD	PMID:33212167
Mideas	Rat	arsane	multiple interactions	ISO	MIDEAS (Homo sapiens)	6480464	[sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of MIDEAS mRNA	CTD	PMID:39836092
Mideas	Rat	arsenic atom	multiple interactions	ISO	MIDEAS (Homo sapiens)	6480464	[sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of MIDEAS mRNA	CTD	PMID:39836092
Mideas	Rat	benzo[a]pyrene	affects methylation	ISO	MIDEAS (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of MIDEAS 3' UTR and Benzo(a)pyrene affects the methylation of MIDEAS 5' UTR	CTD	PMID:27901495
Mideas	Rat	benzo[a]pyrene	multiple interactions	ISO	Mideas (Mus musculus)	6480464	[Benzo(a)pyrene co-treated with benz(a)anthracene co-treated with benzo(b)fluoranthene co-treated with chrysene] results in decreased expression of MIDEAS mRNA	CTD	PMID:27858113
Mideas	Rat	benzo[a]pyrene diol epoxide I	decreases expression	ISO	MIDEAS (Homo sapiens)	6480464	7 more ...	CTD	PMID:20382639
Mideas	Rat	benzo[b]fluoranthene	multiple interactions	ISO	Mideas (Mus musculus)	6480464	[Benzo(a)pyrene co-treated with benz(a)anthracene co-treated with benzo(b)fluoranthene co-treated with chrysene] results in decreased expression of MIDEAS mRNA	CTD	PMID:27858113
Mideas	Rat	bisphenol A	affects expression	EXP		6480464	bisphenol A affects the expression of MIDEAS mRNA	CTD	PMID:25181051
Mideas	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of MIDEAS mRNA	CTD	PMID:32145629 and PMID:34947998
Mideas	Rat	buta-1,3-diene	decreases expression	ISO	Mideas (Mus musculus)	6480464	1 and 3-butadiene results in decreased expression of MIDEAS mRNA	CTD	PMID:29038090
Mideas	Rat	cadmium dichloride	increases expression	EXP		6480464	Cadmium Chloride results in increased expression of MIDEAS mRNA	CTD	PMID:33453195
Mideas	Rat	caffeine	affects phosphorylation	ISO	MIDEAS (Homo sapiens)	6480464	Caffeine affects the phosphorylation of MIDEAS protein	CTD	PMID:35688186
Mideas	Rat	chrysene	multiple interactions	ISO	Mideas (Mus musculus)	6480464	[Benzo(a)pyrene co-treated with benz(a)anthracene co-treated with benzo(b)fluoranthene co-treated with chrysene] results in decreased expression of MIDEAS mRNA	CTD	PMID:27858113
Mideas	Rat	chrysene	decreases expression	ISO	Mideas (Mus musculus)	6480464	chrysene results in decreased expression of MIDEAS mRNA	CTD	PMID:26377693
Mideas	Rat	cisplatin	decreases expression	ISO	MIDEAS (Homo sapiens)	6480464	Cisplatin results in decreased expression of MIDEAS mRNA	CTD	PMID:27392435
Mideas	Rat	cisplatin	multiple interactions	ISO	MIDEAS (Homo sapiens)	6480464	[Cisplatin co-treated with jinfukang] results in decreased expression of MIDEAS mRNA	CTD	PMID:27392435
Mideas	Rat	coumarin	decreases phosphorylation	ISO	MIDEAS (Homo sapiens)	6480464	coumarin results in decreased phosphorylation of MIDEAS protein	CTD	PMID:35688186
Mideas	Rat	crotonaldehyde	decreases expression	ISO	MIDEAS (Homo sapiens)	6480464	2-butenal results in decreased expression of MIDEAS mRNA	CTD	PMID:20471460
Mideas	Rat	diazinon	increases methylation	ISO	MIDEAS (Homo sapiens)	6480464	Diazinon results in increased methylation of MIDEAS gene	CTD	PMID:22964155
Mideas	Rat	Dibutyl phosphate	affects expression	ISO	MIDEAS (Homo sapiens)	6480464	di-n-butylphosphoric acid affects the expression of MIDEAS mRNA	CTD	PMID:37042841
Mideas	Rat	dicrotophos	increases expression	ISO	MIDEAS (Homo sapiens)	6480464	dicrotophos results in increased expression of MIDEAS mRNA	CTD	PMID:28302478
Mideas	Rat	dorsomorphin	multiple interactions	ISO	MIDEAS (Homo sapiens)	6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1 more ...	CTD	PMID:27188386
Mideas	Rat	doxorubicin	decreases expression	ISO	MIDEAS (Homo sapiens)	6480464	Doxorubicin results in decreased expression of MIDEAS mRNA	CTD	PMID:29803840
Mideas	Rat	epoxiconazole	decreases expression	ISO	Mideas (Mus musculus)	6480464	epoxiconazole results in decreased expression of MIDEAS mRNA	CTD	PMID:35436446
Mideas	Rat	ethylparaben	increases expression	ISO	MIDEAS (Homo sapiens)	6480464	ethyl-p-hydroxybenzoate results in increased expression of MIDEAS mRNA	CTD	PMID:37690743
Mideas	Rat	fipronil	increases expression	EXP		6480464	fipronil results in increased expression of MIDEAS mRNA	CTD	PMID:34044035
Mideas	Rat	fluoranthene	multiple interactions	ISO	Mideas (Mus musculus)	6480464	[1-methylanthracene co-treated with fluoranthene] results in increased expression of MIDEAS mRNA	CTD	PMID:28329830
Mideas	Rat	formaldehyde	decreases expression	ISO	MIDEAS (Homo sapiens)	6480464	Formaldehyde results in decreased expression of MIDEAS mRNA	CTD	PMID:20655997
Mideas	Rat	FR900359	affects phosphorylation	ISO	MIDEAS (Homo sapiens)	6480464	FR900359 affects the phosphorylation of MIDEAS protein	CTD	PMID:37730182
Mideas	Rat	inulin	multiple interactions	ISO	Mideas (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Inulin] results in decreased expression of MIDEAS mRNA	CTD	PMID:36331819
Mideas	Rat	lead(0)	affects expression	ISO	MIDEAS (Homo sapiens)	6480464	Lead affects the expression of MIDEAS mRNA	CTD	PMID:28903495
Mideas	Rat	leflunomide	increases expression	ISO	MIDEAS (Homo sapiens)	6480464	Leflunomide results in increased expression of MIDEAS mRNA	CTD	PMID:28988120
Mideas	Rat	methylmercury chloride	increases expression	ISO	MIDEAS (Homo sapiens)	6480464	methylmercuric chloride results in increased expression of MIDEAS mRNA	CTD	PMID:28001369
Mideas	Rat	ozone	multiple interactions	ISO	Mideas (Mus musculus)	6480464	[Air Pollutants results in increased abundance of [Ozone co-treated with Soot]] which results in decreased expression of MIDEAS mRNA	CTD	PMID:34911549
Mideas	Rat	paracetamol	increases expression	ISO	MIDEAS (Homo sapiens)	6480464	Acetaminophen results in increased expression of MIDEAS mRNA	CTD	PMID:29067470
Mideas	Rat	paracetamol	increases expression	EXP		6480464	Acetaminophen results in increased expression of MIDEAS mRNA	CTD	PMID:33387578
Mideas	Rat	perfluorooctane-1-sulfonic acid	multiple interactions	ISO	Mideas (Mus musculus)	6480464	[perfluorooctane sulfonic acid co-treated with Inulin] results in decreased expression of MIDEAS mRNA	CTD	PMID:36331819
Mideas	Rat	phenylmercury acetate	increases expression	ISO	MIDEAS (Homo sapiens)	6480464	Phenylmercuric Acetate results in increased expression of MIDEAS mRNA	CTD	PMID:26272509
Mideas	Rat	phenylmercury acetate	multiple interactions	ISO	MIDEAS (Homo sapiens)	6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of MIDEAS mRNA	CTD	PMID:27188386
Mideas	Rat	potassium dichromate	increases expression	ISO	MIDEAS (Homo sapiens)	6480464	Potassium Dichromate results in increased expression of MIDEAS protein	CTD	PMID:23718831
Mideas	Rat	SB 431542	multiple interactions	ISO	MIDEAS (Homo sapiens)	6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1 more ...	CTD	PMID:27188386
Mideas	Rat	silver atom	increases expression	ISO	MIDEAS (Homo sapiens)	6480464	Silver results in increased expression of MIDEAS mRNA	CTD	PMID:26014281
Mideas	Rat	silver(0)	increases expression	ISO	MIDEAS (Homo sapiens)	6480464	Silver results in increased expression of MIDEAS mRNA	CTD	PMID:26014281
Mideas	Rat	sodium arsenite	decreases expression	ISO	MIDEAS (Homo sapiens)	6480464	sodium arsenite results in decreased expression of MIDEAS mRNA	CTD	PMID:38568856
Mideas	Rat	sodium arsenite	multiple interactions	ISO	MIDEAS (Homo sapiens)	6480464	[sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of MIDEAS mRNA	CTD	PMID:39836092
Mideas	Rat	tetraphene	decreases expression	ISO	Mideas (Mus musculus)	6480464	benz(a)anthracene results in decreased expression of MIDEAS mRNA	CTD	PMID:26377693
Mideas	Rat	tetraphene	multiple interactions	ISO	Mideas (Mus musculus)	6480464	[Benzo(a)pyrene co-treated with benz(a)anthracene co-treated with benzo(b)fluoranthene co-treated with chrysene] results in decreased expression of MIDEAS mRNA	CTD	PMID:27858113
Mideas	Rat	thioacetamide	increases expression	EXP		6480464	Thioacetamide results in increased expression of MIDEAS mRNA	CTD	PMID:34492290
Mideas	Rat	thiram	decreases expression	ISO	MIDEAS (Homo sapiens)	6480464	Thiram results in decreased expression of MIDEAS mRNA	CTD	PMID:38568856
Mideas	Rat	titanium dioxide	increases expression	ISO	Mideas (Mus musculus)	6480464	titanium dioxide results in increased expression of MIDEAS mRNA	CTD	PMID:23557971 and PMID:35295148
Mideas	Rat	trichostatin A	increases expression	ISO	MIDEAS (Homo sapiens)	6480464	trichostatin A results in increased expression of MIDEAS mRNA	CTD	PMID:26272509
Mideas	Rat	trichostatin A	multiple interactions	ISO	MIDEAS (Homo sapiens)	6480464	[NOG protein co-treated with trichostatin A co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of MIDEAS mRNA	CTD	PMID:27188386
Mideas	Rat	valproic acid	increases methylation	ISO	MIDEAS (Homo sapiens)	6480464	Valproic Acid results in increased methylation of MIDEAS gene	CTD	PMID:29154799
Mideas	Rat	valproic acid	increases expression	ISO	MIDEAS (Homo sapiens)	6480464	Valproic Acid results in increased expression of MIDEAS mRNA	CTD	PMID:23179753 more ...
Mideas	Rat	valproic acid	multiple interactions	ISO	MIDEAS (Homo sapiens)	6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1 and 3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased expression of MIDEAS mRNA	CTD	PMID:27188386
Mideas	Rat	valproic acid	decreases expression	ISO	MIDEAS (Homo sapiens)	6480464	Valproic Acid results in decreased expression of MIDEAS mRNA	CTD	PMID:28001369

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Mideas	Rat	negative regulation of DNA-templated transcription	involved_in	IBA	FB:FBgn0261573 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Mideas	Rat	regulation of transcription by RNA polymerase II	involved_in	IBA	PANTHER:PTN001043031 and UniProtKB:Q96PN7	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Mideas	Rat	histone deacetylase complex	part_of	IBA	MGI:3647699 and PANTHER:PTN001043031	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Mideas	Rat	nucleoplasm	located_in	ISO	MIDEAS (Homo sapiens)	1624291		RGD	GO_REF:0000052
Mideas	Rat	nucleoplasm	located_in	IEA	UniProtKB:A0A1C7CYX1 and ensembl:ENSP00000407767	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Mideas	Rat	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Mideas	Rat	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Mideas	Rat	transcription regulator complex	part_of	IBA	FB:FBgn0261573 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Mideas	Rat	transcription corepressor activity	enables	IBA	FB:FBgn0261573 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Mideas
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	109,519,011 - 109,585,631 (-)	NCBI		GRCr8
mRatBN7.2	6	103,784,779 - 103,854,470 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	103,787,873 - 103,829,178 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	103,949,668 - 103,990,970 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	104,248,755 - 104,290,056 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	103,618,341 - 103,659,643 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	107,633,762 - 107,703,462 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	107,633,716 - 107,678,156 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	117,855,896 - 117,902,538 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	108,204,240 - 108,245,370 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	6	108,207,831 - 108,248,832 (-)	NCBI
Celera	6	101,616,790 - 101,658,151 (-)	NCBI		Celera
Cytogenetic Map	6	q31	NCBI

MIDEAS
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	73,715,122 - 73,790,285 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	73,715,122 - 73,790,285 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	74,181,825 - 74,253,911 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	73,251,578 - 73,323,649 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	73,251,578 - 73,296,745	NCBI
Celera	14	54,217,906 - 54,289,979 (-)	NCBI		Celera
Cytogenetic Map	14	q24.3	NCBI
HuRef	14	54,349,253 - 54,421,330 (-)	NCBI		HuRef
CHM1_1	14	74,121,371 - 74,193,565 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	67,922,658 - 67,997,994 (-)	NCBI		T2T-CHM13v2.0

Mideas
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	84,195,942 - 84,265,679 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	84,195,950 - 84,265,655 (-)	Ensembl		GRCm39 Ensembl
GRCm38	12	84,149,168 - 84,218,881 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	84,149,176 - 84,218,881 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	85,490,118 - 85,559,831 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	85,042,150 - 85,083,785 (-)	NCBI		MGSCv36	mm8
Celera	12	85,596,015 - 85,665,703 (-)	NCBI		Celera
Cytogenetic Map	12	D1	NCBI
cM Map	12	39.07	NCBI

Mideas
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955523	1,651,906 - 1,719,556 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955523	1,611,293 - 1,674,067 (+)	NCBI	ChiLan1.0	ChiLan1.0

MIDEAS
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	74,805,125 - 74,880,766 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	74,021,639 - 74,097,183 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	54,274,444 - 54,349,983 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	73,130,955 - 73,206,272 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	73,130,955 - 73,176,626 (-)	Ensembl	panpan1.1		panPan2

MIDEAS
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	46,978,452 - 47,044,450 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	46,978,577 - 47,054,872 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	46,659,737 - 46,729,881 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	47,205,002 - 47,274,875 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	47,208,205 - 47,274,837 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	46,871,978 - 46,942,191 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	46,890,267 - 46,960,200 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	47,280,774 - 47,350,979 (-)	NCBI		UU_Cfam_GSD_1.0

Mideas
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	29,006,701 - 29,073,608 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936488	2,998,684 - 3,062,251 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936488	2,995,362 - 3,062,231 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MIDEAS
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	97,052,417 - 97,122,966 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	97,056,519 - 97,125,236 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	102,828,156 - 102,878,979 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MIDEAS
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	50,920,102 - 50,991,859 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	50,917,943 - 50,994,706 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	39,134,929 - 39,210,828 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mideas
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	27,819,746 - 27,840,378 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624734	27,716,744 - 27,840,473 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Mideas
183 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	110
Count of miRNA genes:	82
Interacting mature miRNAs:	85
Transcripts:	ENSRNOT00000014158
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
12801411	Schws8	Schwannoma susceptibility QTL 8			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	94968928	139968928	Rat
1331799	Bp211	Blood pressure QTL 211	3.66407		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	72202632	130919985	Rat
1358355	Srcrt4	Stress Responsive Cort QTL 4	6.39		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	100364669	140994061	Rat
634330	Pia16	Pristane induced arthritis QTL 16	3.9		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	6	45790088	104200226	Rat
2313399	Anxrr28	Anxiety related response QTL 28			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	6	100671796	132340886	Rat
1331789	Rf37	Renal function QTL 37	3.224		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	6	72202632	115200186	Rat
1331725	Bp212	Blood pressure QTL 212	3.52475		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	93701310	128713626	Rat
1331722	Thshl1	Thyroid stimulating hormone level QTL 1	11.7	0.0001	blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	6	89762877	106752806	Rat
8552796	Vie3	Viral induced encephalitis QTL 3	2.6		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	6	96833997	140994061	Rat
4145119	Mcs25	Mammary carcinoma susceptibility QTL 25		0.0001	mammary gland integrity trait (VT:0010552)	ratio of deaths to total study population during a period of time (CMO:0001023)	6	10894415	110548006	Rat
1581563	Uae33	Urinary albumin excretion QTL 33			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	72227641	130729205	Rat
10054138	Gmadr3	Adrenal mass QTL 3	3.68	0.00045	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	6	85140138	130140138	Rat
1558641	Cm47	Cardiac mass QTL 47	2.9	0.001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	6	57730540	104085867	Rat
61414	Pia3	Pristane induced arthritis QTL 3	4.5		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	6	94968928	137848904	Rat
724524	Uae2	Urinary albumin excretion QTL 2	2.7	0.0005	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	73463459	109394713	Rat
737827	Hcar11	Hepatocarcinoma resistance QTL 11	4.4		liver integrity trait (VT:0010547)	liver tumorous lesion number (CMO:0001068)	6	82523650	110548006	Rat
1641904	Alcrsp4	Alcohol response QTL 4			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	6	67262953	112262953	Rat
724513	Uae14	Urinary albumin excretion QTL 14	6.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	85311061	133478515	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	6	88047916	133047916	Rat
1576309	Emca7	Estrogen-induced mammary cancer QTL 7	4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	6	15107216	107351382	Rat
731173	Uae22	Urinary albumin excretion QTL 22	10.1		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	65531555	140994061	Rat
2293837	Kiddil1	Kidney dilation QTL 1	3.7		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	81132889	104393926	Rat
2293842	Kiddil3	Kidney dilation QTL 3	4.3		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	6	81132889	104393926	Rat
10054123	Srcrt6	Stress Responsive Cort QTL 6	2.5	0.0043	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	85140138	130140138	Rat
724536	Uae7	Urinary albumin excretion QTL 7	3.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	72202632	130729475	Rat
70196	BpQTLcluster7	Blood pressure QTL cluster 7	6.82		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	6	72202632	117202632	Rat
1581550	Pur8	Proteinuria QTL 8			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	72227641	130729205	Rat
1576302	Schws4	Schwannoma susceptibility QTL 4		0.0078	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	83190345	106747639	Rat
1300075	Glom7	Glomerulus QTL 7	5.6	0.0000002	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)	6	71201409	116201409	Rat
738034	Anxrr5	Anxiety related response QTL 5	5.9		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	6	84130881	129130881	Rat
2290393	Uae37	Urinary albumin excretion QTL 37		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	65531555	140994061	Rat
12801471	Schws9	Schwannoma susceptibility QTL 9			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	61747639	106747639	Rat
6893332	Cm74	Cardiac mass QTL 74	0.4	0.64	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	6	57730540	104085867	Rat
1300076	Glom8	Glomerulus QTL 8	7	9e-09	kidney glomerulus morphology trait (VT:0005325)	count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)	6	86894788	131894788	Rat

D6Rat91

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	6	109,560,556 - 109,560,718 (+)	Marker Load Pipeline
mRatBN7.2	6	103,829,422 - 103,829,584 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	107,678,401 - 107,678,562	NCBI	Rnor6.0
Rnor_5.0	6	117,858,071 - 117,858,232	UniSTS	Rnor5.0
RGSC_v3.4	6	108,245,614 - 108,245,776	RGD	RGSC3.4
RGSC_v3.4	6	108,245,615 - 108,245,776	UniSTS	RGSC3.4
RGSC_v3.1	6	108,249,070 - 108,249,232	RGD
Celera	6	101,658,396 - 101,658,557	UniSTS
FHH x ACI Map	6	68.02	UniSTS
FHH x ACI Map	6	68.02	RGD
Cytogenetic Map	6	q31	UniSTS

RH132686

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	103,787,943 - 103,788,139 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	107,636,927 - 107,637,122	NCBI	Rnor6.0
Rnor_5.0	6	117,899,178 - 117,899,373	UniSTS	Rnor5.0
RGSC_v3.4	6	108,204,311 - 108,204,506	UniSTS	RGSC3.4
Celera	6	101,616,861 - 101,617,056	UniSTS
RH 3.4 Map	6	731.99	UniSTS
Cytogenetic Map	6	q31	UniSTS

RH142982

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	103,855,192 - 103,855,337 (+)	MAPPER	mRatBN7.2
mRatBN7.2	6	103,855,192 - 103,855,337 (-)	MAPPER	mRatBN7.2
Rnor_6.0	6	110,739,229 - 110,739,373	NCBI	Rnor6.0
Rnor_6.0	6	107,704,168 - 107,704,312	NCBI	Rnor6.0
Rnor_5.0	6	120,034,695 - 120,034,839	UniSTS	Rnor5.0
RGSC_v3.4	6	108,271,384 - 108,271,528	UniSTS	RGSC3.4
Celera	6	101,684,127 - 101,684,271	UniSTS
RH 3.4 Map	6	733.1	UniSTS
Cytogenetic Map	6	q31	UniSTS

BE107742

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	103,793,684 - 103,793,866 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	107,642,666 - 107,642,847	NCBI	Rnor6.0
Rnor_5.0	6	117,893,453 - 117,893,634	UniSTS	Rnor5.0
RGSC_v3.4	6	108,210,050 - 108,210,231	UniSTS	RGSC3.4
Celera	6	101,622,600 - 101,622,781	UniSTS
RH 3.4 Map	6	741.7	UniSTS
Cytogenetic Map	6	q31	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001169116	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764791	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112308	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC094055	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000014158 ⟹ ENSRNOP00000014158

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	6	103,787,873 - 103,829,178 (-)	Ensembl
Rnor_6.0 Ensembl	6	107,636,856 - 107,678,156 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000088712 ⟹ ENSRNOP00000075492

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	6	107,633,716 - 107,658,741 (-)	Ensembl

RefSeq Acc Id:

NM_001169116 ⟹ NP_001162587

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	109,519,011 - 109,560,312 (-)	NCBI
mRatBN7.2	6	103,787,873 - 103,829,178 (-)	NCBI
Rnor_6.0	6	107,636,856 - 107,678,156 (-)	NCBI
Rnor_5.0	6	117,855,896 - 117,902,538 (+)	NCBI
RGSC_v3.4	6	108,204,240 - 108,245,370 (-)	RGD
Celera	6	101,616,790 - 101,658,151 (-)	RGD

Sequence:

show sequence

CTGGTTCCTGCTCGCCGCCGTGCCGCGCGCGCCGGCCAGCCACTGGGCGCTCGGAGCTCCCAGCCTCGAGTTGTGCAATCCTTTGTAGCACGCCAGCGAGTCCTCCTCCTTCGCTCTTGCCTCTCGCC
CTCTCTCTTTTTTTCAAGCTGTGAGCTCAACCGATGAGTCAGAGCCGTGCAATCCTGACACTGCATCGCAGGACTGGGGGTGACACGCAGGGAGGGAGAGCGCTCTCGAGGCGGACTGTAAGGGCGCG
GGGCGCGCCGAGGCTGCCGAGTCGCGAGCAGCGGGTGACAGCACACACGTCCCGCCCGGGCCCTGCCAGCAAACTTCCAGGCTTCGGGAAGCGCGGGCTTGGCTGAAACCCTGCGAACGCCGCGGGGA
AGCGACGGCGCCTGTTTGTTTTTAAAATCCGGGAGTGTGTGCAGGCGACTGGGTTCTTCAGAGGCGACCTAAGGCGGCGGCCCGCGGCGGAAGGAAGGGGCACTGCTGAGGCCGGAGGCCGAGTGGGA
GCTGGGCTCCAGGACCTGGTGCAGCATCATGACTGGGGAAGTGTAGCTGAGCTCAAGACTCTCCCTAGAAGAGGAAGGACCAGTGGACGTTTCTCGGCTCTTGCCTGAGGGCTCCTGAGTTTTCCTCT
GCCCCTCTTCTGCCTTCCCTGGCTACTGGACTGGGGCCAGGCTTCCAGCAGGACCTTCTCCCAAGGGATGGGCATCTGCTGAAGGACGTCTCATTGTCAGGCTTAGCTGGCCACACCATGAACCTCCA
GGCCCAGTCCAAGGCTCAGAATAAGCGCAAGCGTTGTCCTTATGGGGACCAGGAGCCAGCTGCTAAGGAACAGCCACCACCACTGCAGGCTCCACCACAGTCCCTCAGAGCTAAAGAGGAACAGTACG
GTCCCCACGAAGGTCCCGCGGGGGTCGCCTCCACCACCCAGCCTGTGGAGCTATCTCCTCCCAACAACCTGGCTCTGCTGAACAGTGTGGTATATGGATCTGAACGGACCACAGCAGCCATGCTGTCC
CAGCAGGCCCAGGTCAGCTCAGTAAAGTGGCCCAACTCCGTGATGACTCCAGGGCGGGGCCTGGAGTGTGGGGGAGGTGCAGGCATCAGCGACAGTGGCTGGCAGCAACAACCTGGCCAGCCCCCACC
CCACTCCACGTGGAATCACCTGCCCCTCTACAGTGGACCCAAAGGGGGCCCTCATCCAGGTGTGGGGGTCTCTCCCTACTATAACCACGCCGAGGCACTGAAGGGGAACAAACCTGGGGGTCCACAGC
TGGATCACTATGGAAACGCAGTGCAGCCCATGGTGCCACAGAAGATGCAGCTGGAGGTGGGGAGGCCCCAAGCGCCCTTGAACTCTTATCATTCAGCCAAGAAACCCCCAAACCAGACACTGCCCTTG
CAACCCTTCCAGCTGGCATTTGGCCACCAGGTGAACCGCCAGGTCTTCCGGCAGGGCCCTCAGCCCTCTAACCCCACCACCTCCTTCCCGCCCCAGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCC
GCCGGCAGCCCTGCCCCACATGCAGCTATTTGAGAACTACTACCCCATGCATCAGCCGCCTTCACAGCAGCACCAGGACTTTACCCTGGCACCGGGCGGGCCCCTGGGACAGACTCACCTGCCTCACC
GCGGCATGGCCCCCTACCCGTTCCCCCACAACCCAGAACTGCGCAAGGCCCTCCTGCAGGACCCTGCTTCACAGCCCGTGCTACCTCAGCCCCAGATGGCCTTCCCGCGCCGCTCCCGCCGTCTCTCC
AAGGAGGGGATTCTGCCTTCCAACTCCCTCGATGGAGCTGGCACCCAACCTGGACAGGAGCCCACGAGCAATCTGTTCCTCCATCACTGGTCTTTGCAGCAGCCGCCGCCAGGCGCCCTGGGGCAGCC
CCATTCCGAAGCCCTGGGATTCCCGTTAGAACTCCGGGAGTCGCAGCTGCTGGTGGATGGGGACAGACTGGCACCCAATGGCCGAGAGCGGGAGGCTCCCGCCGTGGGTAATGAGGAGGTCTCGAGGG
CAGGGGGCCTCGGGGACTGTGGGCAGATGATGCGAAGCGGGGTGATCCAGAGCACAAGGCGGAGACGCAGGGCGTCCCAGGAAGCTAATTTGCTGACCCTGGCCCAGAAGGCGGTGGAGCTGGCCTCT
CTGCAGGATGCCAATGGCTCTGAGGAGAAGCGGAAAAGCGTGCTGGCCTCAACTGCCAAGTGTGGTGTGGAGTTTTCTGAGCCCGCCTCAGCTGCCAAGAGAGCTCGGGAGGAGAGTGGGATGGTGCC
CCTCATCATCCCCGTGTCTGTTCCTGTGAGGACCGTGGGCCCCACCGAGGTGGCCCAAGTTGGAGGTTCTGATGAGGATGGGAAGGGTCTTGAGCAGTTCCCCACTGACCACAAGCCGTCGGTCATCG
TAACCCGCAGGAGGTCTACCCGAGTGCCCGGGACAGATACTGCAGCTCAGGCCGAAGACCTGAACGCCAAGTTGGAGGGAGAACCTTCTATGCGGAAACCAAAGCAGCGGCCACGGCCGGAGCCTCTC
ATCATCCCCACCAAGGCGGGCACTTTCATTGCCCCTCCTGTCTACTCCAACATCACCCCCTACCAGAGCCACCTGCGTTCTCCTGTGCGCCTTGCTGACCACCCCTCTGAGAGGAGCTTCGAGCTGCC
CCCTTACACACCACCCCCCATTCTCAGCCCCGTTCGGGAAGGCTCTGGCCTCTACTTCAATGCCATCCTGTCAACCAGCAACGTCCCGGCCCCTCCTCCTATCACGCCAAAGAGTGCCCATAGGACCC
TGCTCCGCTCTAATAGTTCTGAAGTCACCCCGCCCGTCCTCTCTGTGATGGGGGAGGCCACCCCTGTGAGCATCGAACCACGAATCAACGTCGGCACCCGGTTCCAAGCAGAAATCCCCACAATGAGA
GACAGATCCCTGGCAGCCGCAGACCCCCATAAGGCTGACTTGGTGTGGCAGCCTTGGGAACATCTTGAGAGCAGCTGGGAGAAGCAGAGGCAAGTGGATGACCTGCTGACGGCCGCCTGTTCAAGTAT
TTTCCCTGGTGCCGGCACCAACCAGGAACTGGCCCTACACTATCTGCATGAGTCCCGGGGGGACATCCTGGAGGCGCTGAATAAGCTGCTACTGAAGAAGCCCCTGCGGCCCCACAATCACCCACTGG
CTACCTATCACTACACAGGCTCTGACGAGTGGAAGATGGCTGAGAGGAAGCTGTTCAACAAGGGCATTGCCATCTATAAGAAAGATTTCTTCCTGGTGCAGAAACTGATCCAGACCAAGACTGTGGCT
CAGTGCGTGGAGTTCTACTACACCTACAAGAAACAGGTGAAAATTGGCCGCAACGGGACACTCACCTTTGGTGACCTGGATACCGGTGCTGAGAAGTCCGGCCAAGAGGAAGTCGAGGTGGACGTTAA
GACTTCTCAGAAGTTCCCAAGGGTGCTTCCTCCCAGAAGAGAGTCCCCAAGTGAAGAGAGGCTGGAACCCAAGAGGGAAATGAAAGAACCCAAGAAGGAGGGGGAGGAGGAGGTACCAGACACCCAGG
AAAAGGGAGAGCAGGAGGAGGGGCGAGAGCGCAGCCGTCGGGCCGCGGCTGTCAAAGCTACACAGACACTACAGCCCACTGAGGCGGCCAATGATGTCCTCATTCTCCGGAGCCACGAACCCAATGCC
CCGGGGTCTGCCAGTGTTCAGACCTCAGAGAAGCCAAGGGAAGGGCCGGGGAAGTCACGAAGGGCTCTGCCTTTCACAGAGAAGAAGAAAAAACCGGAGGCATTTAATAAAACCCAAAACCAGGAGAA
CACTTTCCCTTGTAAAAAGTGTGGCAGGGTGTTTTATAAGGTGAAGAGCCGCAGTGCTCACATGAAGAGTCACGCAGAGCAGGAGAAGAAGGCTGCAGCTCTAAGACTGAAGGAGAAGGAGGCTGCAG
CCGCCGCCGCGCACCAGCAGGCGCTGAAAGAAGAGAGCGGCGAAGGCGAGAAGGGCTGAGGCCCTGCTGGATCCTCTTGCCGGGCTCCCCAGAACTCTGTACCTGGAACCTCTAGAGAAGGCCAGGAG
AGGATCACTTGGACTTTGCTTTGCAAAACAAATCAAATAATGAAAAATAAACAGGCTCTTTTATTTA

hide sequence

RefSeq Acc Id:

XM_008764791 ⟹ XP_008763013

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	109,519,011 - 109,585,631 (-)	NCBI
mRatBN7.2	6	103,788,009 - 103,854,470 (-)	NCBI
Rnor_6.0	6	107,633,762 - 107,703,462 (-)	NCBI

Sequence:

show sequence

CTAGCTGCTGGGTCACAGCCCTAGCCGCGCCGCCTGCTCGGCGAGGAAGTGACGACTGCGCCGTCCGGAGAGCAACAAAGTTTGAGTCTGCGGGTCGCGCTCGCCTGCGTCCCGCGCCCCCTCGGAGC
TACCCAGGGATCCAGCGTGCAGGCTCCAGGACCTGGTGCAGCATCATGACTGGGGAAGTGTAGCTGAGCTCAAGACTCTCCCTAGAAGAGGAAGGACCAGTGGACGTTTCTCGGCTCTTGCCTGAGGG
CTCCTGAGTTTTCCTCTGCCCCTCTTCTGCCTTCCCTGGCTACTGGACTGGGGCCAGGCTTCCAGCAGGACCTTCTCCCAAGGGATGGGCATCTGCTGAAGGACGTCTCATTGTCAGGCTTAGCTGGC
CACACCATGAACCTCCAGGCCCAGTCCAAGGCTCAGAATAAGCGCAAGCGTTGTCCTTATGGGGACCAGGAGCCAGCTGCTAAGGAACAGCCACCACCACTGCAGGCTCCACCACAGTCCCTCAGAGC
TAAAGAGGAACAGTACGGTCCCCACGAAGGTCCCGCGGGGGTCGCCTCCACCACCCAGCCTGTGGAGCTATCTCCTCCCAACAACCTGGCTCTGCTGAACAGTGTGGTATATGGATCTGAACGGACCA
CAGCAGCCATGCTGTCCCAGCAGGCCCAGGTCAGCTCAGTAAAGTGGCCCAACTCCGTGATGACTCCAGGGCGGGGCCTGGAGTGTGGGGGAGGTGCAGGCATCAGCGACAGTGGCTGGCAGCAACAA
CCTGGCCAGCCCCCACCCCACTCCACGTGGAATCACCTGCCCCTCTACAGTGGACCCAAAGGGGGCCCTCATCCAGGTGTGGGGGTCTCTCCCTACTATAACCACGCCGAGGCACTGAAGGGGAACAA
ACCTGGGGGTCCACAGCTGGATCACTATGGAAACGCAGTGCAGCCCATGGTGCCACAGAAGATGCAGCTGGAGGTGGGGAGGCCCCAAGCGCCCTTGAACTCTTATCATTCAGCCAAGAAACCCCCAA
ACCAGACACTGCCCTTGCAACCCTTCCAGCTGGCATTTGGCCACCAGGTGAACCGCCAGGTCTTCCGGCAGGGCCCTCAGCCCTCTAACCCCACCACCTCCTTCCCGCCCCAGAAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCCGCCGGCAGCCCTGCCCCACATGCAGCTATTTGAGAACTACTACCCCATGCATCAGCCGCCTTCACAGCAGCACCAGGACTTTACCCTGGCACCGGGCGGGCCCCTGGGACA
GACTCACCTGCCTCACCGCGGCATGGCCCCCTACCCGTTCCCCCACAACCCAGAACTGCGCAAGGCCCTCCTGCAGGACCCTGCTTCACAGCCCGTGCTACCTCAGCCCCAGATGGCCTTCCCGCGCC
GCTCCCGCCGTCTCTCCAAGGAGGGGATTCTGCCTTCCAACTCCCTCGATGGAGCTGGCACCCAACCTGGACAGGAGCCCACGAGCAATCTGTTCCTCCATCACTGGTCTTTGCAGCAGCCGCCGCCA
GGCGCCCTGGGGCAGCCCCATTCCGAAGCCCTGGGATTCCCGTTAGAACTCCGGGAGTCGCAGCTGCTGGTGGATGGGGACAGACTGGCACCCAATGGCCGAGAGCGGGAGGCTCCCGCCGTGGGTAA
TGAGGAGGTCTCGAGGGCAGGGGGCCTCGGGGACTGTGGGCAGATGATGCGAAGCGGGGTGATCCAGAGCACAAGGCGGAGACGCAGGGCGTCCCAGGAAGCTAATTTGCTGACCCTGGCCCAGAAGG
CGGTGGAGCTGGCCTCTCTGCAGGATGCCAATGGCTCTGAGGAGAAGCGGAAAAGCGTGCTGGCCTCAACTGCCAAGTGTGGTGTGGAGTTTTCTGAGCCCGCCTCAGCTGCCAAGAGAGCTCGGGAG
GAGAGTGGGATGGTGCCCCTCATCATCCCCGTGTCTGTTCCTGTGAGGACCGTGGGCCCCACCGAGGTGGCCCAAGTTGGAGGTTCTGATGAGGATGGGAAGGGTCTTGAGCAGTTCCCCACTGACCA
CAAGCCGTCGGTCATCGTAACCCGCAGGAGGTCTACCCGAGTGCCCGGGACAGATACTGCAGCTCAGGCCGAAGACCTGAACGCCAAGTTGGAGGGAGAACCTTCTATGCGGAAACCAAAGCAGCGGC
CACGGCCGGAGCCTCTCATCATCCCCACCAAGGCGGGCACTTTCATTGCCCCTCCTGTCTACTCCAACATCACCCCCTACCAGAGCCACCTGCGTTCTCCTGTGCGCCTTGCTGACCACCCCTCTGAG
AGGAGCTTCGAGCTGCCCCCTTACACACCACCCCCCATTCTCAGCCCCGTTCGGGAAGGCTCTGGCCTCTACTTCAATGCCATCCTGTCAACCAGCAACGTCCCGGCCCCTCCTCCTATCACGCCAAA
GAGTGCCCATAGGACCCTGCTCCGCTCTAATAGTTCTGAAGTCACCCCGCCCGTCCTCTCTGTGATGGGGGAGGCCACCCCTGTGAGCATCGAACCACGAATCAACGTCGGCACCCGGTTCCAAGCAG
AAATCCCCACAATGAGAGACAGATCCCTGGCAGCCGCAGACCCCCATAAGGCTGACTTGGTGTGGCAGCCTTGGGAACATCTTGAGAGCAGCTGGGAGAAGCAGAGGCAAGTGGATGACCTGCTGACG
GCCGCCTGTTCAAGTATTTTCCCTGGTGCCGGCACCAACCAGGAACTGGCCCTACACTATCTGCATGAGTCCCGGGGGGACATCCTGGAGGCGCTGAATAAGCTGCTACTGAAGAAGCCCCTGCGGCC
CCACAATCACCCACTGGCTACCTATCACTACACAGGCTCTGACGAGTGGAAGATGGCTGAGAGGAAGCTGTTCAACAAGGGCATTGCCATCTATAAGAAAGATTTCTTCCTGGTGCAGAAACTGATCC
AGACCAAGACTGTGGCTCAGTGCGTGGAGTTCTACTACACCTACAAGAAACAGGTGAAAATTGGCCGCAACGGGACACTCACCTTTGGTGACCTGGATACCGGTGCTGAGAAGTCCGGCCAAGAGGAA
GTCGAGGTGGACGTTAAGACTTCTCAGAAGTTCCCAAGGGTGCTTCCTCCCAGAAGAGAGTCCCCAAGTGAAGAGAGGCTGGAACCCAAGAGGGAAATGAAAGAACCCAAGAAGGAGGGGGAGGAGGA
GGTACCAGACACCCAGGAAAAGGGAGAGCAGGAGGAGGGGCGAGAGCGCAGCCGTCGGGCCGCGGCTGTCAAAGCTACACAGACACTACAGCCCACTGAGGCGGCCAATGATGTCCTCATTCTCCGGA
GCCACGAACCCAATGCCCCGGGGTCTGCCAGTGTTCAGACCTCAGAGAAGCCAAGGGAAGGGCCGGGGAAGTCACGAAGGGCTCTGCCTTTCACAGAGAAGAAGAAAAAACCGGAGGCATTTAATAAA
ACCCAAAACCAGGAGAACACTTTCCCTTGTAAAAAGTGTGGCAGGGTGTTTTATAAGGTGAAGAGCCGCAGTGCTCACATGAAGAGTCACGCAGAGCAGGAGAAGAAGGCTGCAGCTCTAAGACTGAA
GGAGAAGGAGGCTGCAGCCGCCGCCGCGCACCAGCAGGCGCTGAAAGAAGAGAGCGGCGAAGGCGAGAAGGGCTGAGGCCCTGCTGGATCCTCTTGCCGGGCTCCCCAGAACTCTGTACCTGGAACCT
CTAGAGAAGGCCAGGAGAGGATCACTTGGACTTTGCTTTGCAAAACAAATCAAATAATGAAAAATAAACAGGCTCTTTTATTTACGAAGGCCAAGGACAGTGTTAAGGGCTGCAGGATCCAGTTCTCT
CAGTATCTGGTTTGTCCCGAGTCGTTCTGCTTTCCTGGAGCCTTGAGAGGCCAGGCCCCTTGGAATGGGAAAGAGCTCTGAGCTACTTCTCTGATCTCTGCTGTCGCATCTGTGCCTCTTGTATCCCA
GGTCCTTAGGAAGCCACCACGGCAAGCCAAGCACAAGCTCACCCTGTGACAGCATTATTCCTCCTTCCCCAGAGGACCTGGAAGGCTGTGCAAACCTTTTCCTAAACCCAAAGGGGGCTCCCTAGAGA
GTGGTGGCCTTAATCCCTGTGCTGACCTTGTGAAATCATGCTCAGGCCAGAGCTGCTCCAACGATCCAGTCTTAAGGTCACCACTTCCTTAGTCGGGATCTCGGAGGGCTATTTCAACCCCTTTGCTG
CTTGTCAACAGCCCATCTGGGGCTGTAAAAGTTTTCTCAGACGTTTGGAGTTCATGCCCCACTCTCAGCCTGCTACACCGAGGGGAACTGTTCAGAGGCCTGAAGGTGCAGAGCTAGGCCTGAGGGAC
CTTTGGACAAGCCCATGGCTACCATTTTATATCTTTGAGTCCAGGAGGCTGCTGAAGGAGCCTCAAGCAGGTCCCAGGGAGGCCTGGCCTGGCCTTGGGTGCCAGCTTCCTTCTTGCCTGTCGTGTTC
TCAGTAGCTGCCAGTTACTCCCACTGTACCCTATTTGATGCTGATATTCACGCCCCCACCCCCCACCCCCAATACGGCATGCTGGAGATTTCTGGATCCTTCCCTGGGAGGGGGATGTCTCCTAACTA
GATGAGACAGGAGCCTTCATTCCTTGACTTGTCATTTGGGAACTATTTATTTATTTCTTAATATTTAATTTTTAACATCCTCAGGGACCAGGGGCCTCTTGCTTTCCAGAGGTCCAAGTGCATTTATC
CCAAAATAAGGCACCTTCTTGGCATCTCCAAATCCTCCCCCAGTTCCAAGGCCCTGGGGTCCCTTACTTTGTGACTCTTAGGTGCAGGAGTGATAAAAACTGACGGAACTGGGAAGTTGGGAGTGTTC
TCAGTCACAGGAAACTAGCAGATGTGGGTGAGATCAAAGGCAGGGCTCAGTCCTGCCCTTTCTGTACTCTCAAGTGCTGGAGGGAGTTGGCAAGAGGCCAGAATTCTAGTTTTATTTATCAGCCTGGA
ATCTGGCTTGAAGAAACCATATTTGGCATGGAATTACTGAAGGGTCAGAATGTTCTAGAGGCCCCTTCACTTTCCAGTTCCACAGGAGACTTAAAGTTACTTTTCTGATATGACCACTTAACTTTAGT
TGTACAGAAGGAAGTCTAAGTGAATGTGTGTCGGACTGTTCAGGGTGTTAGTAAGAGCTATAAAGGATTCCTTCACCATTCCCTAGGCAATAGTCTACAGCCCTGTTGGGAACTGGAGATAGAGATGG
GGTTTTTTGTCTTTGAGCTACGGACTATTGGGTGTTTCTTAACATTCATTTACGCATGAGTATGGTTCTATGAGAGCTGCCTATGGAAATAACAAAAAAGTCCCCCTAGATACCTGAACAATTACTTA
ACCTTCAGTTTCCCTGCTTGTTTCCTTCACAGGCTTCTATAAACTCAAAGTCCCGAGATTACAAAAATCTGGTCCCCTCAGAAGTAGAAGGGCAACAAGTTTAGGATCTCTTCTAAACCACTTGTATA
GCGAGTGCCTTCACAGCTTAGCCCCAAAGTGCCACTTAGGTTTCCCAAGATTCTTTTCCATTAAACCATACTTGGCTCAGGCCCCTTGGTGGACAGGTGATATCAGAAATCTTCAGCCACCTGAGACT
CCTCTGTACGGTGGTACCAACTAATCCTTAGAAATCTTAATTTAAAGAAACCAAGTCTGCTTTTCTAAGTTCACAGAGACCAGATGAAGGTAGCCAGGAAAAAAAAGATCAAGATGTTACCTTTAGGT
AGTGATCCACCAGTGATTTACAGGGGCCCATGCTCCGTCGTGCACGTGTGGAGGCTGAACCATTTCAAAGGGGAGATGCACGTGTGGCAGGAGGCTGATACAGGCGCATCCTTACTGGTGCTTTCTCC
CATGAACACACTGGGCTTGGCTTTTGTTGTTCTTTTTCTGTTCAGAGCTCCCTCTTTTACAGTAGCAGCCCTATACCGTGTCACCCTGCCTGTCTCCCAGTGTCCACCTGCGCTCAGAGAGGGCGTGA
ACTGACATAGTGCCTGTGTTCTCCACCGTTTCTGAGGTCTCTTGCCCATCTAAGGAGTCAGTGCCCTTACTGCTGCCCTCCAAGCCTTCAGCAGCCCCTCATAGCTAAGGTACATGCCCACCACCGTT
CTGCCGCTTCACCTCCAACCTTGGCACAGGGCCCTGTGCCGATGATGTCTAAAGGGATTGCCTATATTTAACTGCCTCAGTCACCTAACCTCTTTCTTCTCATGTGCCAGATGTTAAAGATGGAGGGG
AAGAGTACAACACATACTCCAGCCTCAGCTGTTTAAGTGTTTTTATTGGGGCTCACTTTTCTGGGTTGTTATTTATTACTAGACTGGCAAAGCCTAAACCCTTAGGTTTTTACAGGAAGTATGCATAT
TTTTATAAAAAAAACAGTTGTGTCTAACCCACATTTGGCTGTGTTTGTTTCCTCAAAAAAAAAATTTGCAGCTGTTAGAGCTCTTCTTCATTTGTCTCTTAAATTAAAGGCCTTGTTGGAGAGGACAG
CACAGAAACAGCCTTGACTGTAATTATTGTACAGATATTTTAATAGCATAAAGTAAGTATATTCCTTTTATTTTGAAACAAAATGGTCAGACACTGCCTTTCATGTGTTTGTTGCCTGTGGCACTCTT
TTTAAAAAAGACTGTTACATATTAAATAGTGTACATATATATAAATATTACCTCTTTGTGTACAGTTGTGATAGACCAGACCGAAAATTTTATTTTTTGTGTGCTTTTTATAAAAAAAATTAATACAC
TAAAGAGAATCTTGCGGATGTGATTGTAATGTACCCATGTAACTTATTTACTTTTGAATGTTCTGTATCTTAAGACCTTTTATTAAATAAGGTTTTAAAAAAGTCA

hide sequence

RefSeq Acc Id:

XM_039112308 ⟹ XP_038968236

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	109,519,011 - 109,566,792 (-)	NCBI
mRatBN7.2	6	103,784,779 - 103,828,799 (-)	NCBI


Protein RefSeqs	NP_001162587	(Get FASTA)	NCBI Sequence Viewer
	XP_008763013	(Get FASTA)	NCBI Sequence Viewer
	XP_038968236	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL81479	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000014158
	ENSRNOP00000014158.6
	ENSRNOP00000107715

RefSeq Acc Id:

NP_001162587 ⟸ NM_001169116

- UniProtKB:

D4ACA6 (UniProtKB/TrEMBL), A6JDT5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MNLQAQSKAQNKRKRCPYGDQEPAAKEQPPPLQAPPQSLRAKEEQYGPHEGPAGVASTTQPVELSPPNNLALLNSVVYGSERTTAAMLSQQAQVSSVKWPNSVMTPGRGLECGGGAGISDSGWQQQPG
QPPPHSTWNHLPLYSGPKGGPHPGVGVSPYYNHAEALKGNKPGGPQLDHYGNAVQPMVPQKMQLEVGRPQAPLNSYHSAKKPPNQTLPLQPFQLAFGHQVNRQVFRQGPQPSNPTTSFPPQKQQQQQQ
QQQPPAALPHMQLFENYYPMHQPPSQQHQDFTLAPGGPLGQTHLPHRGMAPYPFPHNPELRKALLQDPASQPVLPQPQMAFPRRSRRLSKEGILPSNSLDGAGTQPGQEPTSNLFLHHWSLQQPPPGA
LGQPHSEALGFPLELRESQLLVDGDRLAPNGREREAPAVGNEEVSRAGGLGDCGQMMRSGVIQSTRRRRRASQEANLLTLAQKAVELASLQDANGSEEKRKSVLASTAKCGVEFSEPASAAKRAREES
GMVPLIIPVSVPVRTVGPTEVAQVGGSDEDGKGLEQFPTDHKPSVIVTRRRSTRVPGTDTAAQAEDLNAKLEGEPSMRKPKQRPRPEPLIIPTKAGTFIAPPVYSNITPYQSHLRSPVRLADHPSERS
FELPPYTPPPILSPVREGSGLYFNAILSTSNVPAPPPITPKSAHRTLLRSNSSEVTPPVLSVMGEATPVSIEPRINVGTRFQAEIPTMRDRSLAAADPHKADLVWQPWEHLESSWEKQRQVDDLLTAA
CSSIFPGAGTNQELALHYLHESRGDILEALNKLLLKKPLRPHNHPLATYHYTGSDEWKMAERKLFNKGIAIYKKDFFLVQKLIQTKTVAQCVEFYYTYKKQVKIGRNGTLTFGDLDTGAEKSGQEEVE
VDVKTSQKFPRVLPPRRESPSEERLEPKREMKEPKKEGEEEVPDTQEKGEQEEGRERSRRAAAVKATQTLQPTEAANDVLILRSHEPNAPGSASVQTSEKPREGPGKSRRALPFTEKKKKPEAFNKTQ
NQENTFPCKKCGRVFYKVKSRSAHMKSHAEQEKKAAALRLKEKEAAAAAAHQQALKEESGEGEKG

hide sequence

RefSeq Acc Id:	XP_008763013 ⟸ XM_008764791
- Peptide Label:	isoform X1
- UniProtKB:	D4ACA6 (UniProtKB/TrEMBL), A6JDT5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNLQAQSKAQNKRKRCPYGDQEPAAKEQPPPLQAPPQSLRAKEEQYGPHEGPAGVASTTQPVELSPPNNLALLNSVVYGSERTTAAMLSQQAQVSSVKWPNSVMTPGRGLECGGGAGISDSGWQQQPG QPPPHSTWNHLPLYSGPKGGPHPGVGVSPYYNHAEALKGNKPGGPQLDHYGNAVQPMVPQKMQLEVGRPQAPLNSYHSAKKPPNQTLPLQPFQLAFGHQVNRQVFRQGPQPSNPTTSFPPQKQQQQQQ QQQPPAALPHMQLFENYYPMHQPPSQQHQDFTLAPGGPLGQTHLPHRGMAPYPFPHNPELRKALLQDPASQPVLPQPQMAFPRRSRRLSKEGILPSNSLDGAGTQPGQEPTSNLFLHHWSLQQPPPGA LGQPHSEALGFPLELRESQLLVDGDRLAPNGREREAPAVGNEEVSRAGGLGDCGQMMRSGVIQSTRRRRRASQEANLLTLAQKAVELASLQDANGSEEKRKSVLASTAKCGVEFSEPASAAKRAREES GMVPLIIPVSVPVRTVGPTEVAQVGGSDEDGKGLEQFPTDHKPSVIVTRRRSTRVPGTDTAAQAEDLNAKLEGEPSMRKPKQRPRPEPLIIPTKAGTFIAPPVYSNITPYQSHLRSPVRLADHPSERS FELPPYTPPPILSPVREGSGLYFNAILSTSNVPAPPPITPKSAHRTLLRSNSSEVTPPVLSVMGEATPVSIEPRINVGTRFQAEIPTMRDRSLAAADPHKADLVWQPWEHLESSWEKQRQVDDLLTAA CSSIFPGAGTNQELALHYLHESRGDILEALNKLLLKKPLRPHNHPLATYHYTGSDEWKMAERKLFNKGIAIYKKDFFLVQKLIQTKTVAQCVEFYYTYKKQVKIGRNGTLTFGDLDTGAEKSGQEEVE VDVKTSQKFPRVLPPRRESPSEERLEPKREMKEPKKEGEEEVPDTQEKGEQEEGRERSRRAAAVKATQTLQPTEAANDVLILRSHEPNAPGSASVQTSEKPREGPGKSRRALPFTEKKKKPEAFNKTQ NQENTFPCKKCGRVFYKVKSRSAHMKSHAEQEKKAAALRLKEKEAAAAAAHQQALKEESGEGEKG hide sequence

Ensembl Acc Id:

ENSRNOP00000014158 ⟸ ENSRNOT00000014158

Ensembl Acc Id:

ENSRNOP00000075492 ⟸ ENSRNOT00000088712

RefSeq Acc Id:	XP_038968236 ⟸ XM_039112308
- Peptide Label:	isoform X2
- UniProtKB:	A6JDT5 (UniProtKB/TrEMBL)

Protein Domains

C2H2-type ELM2 SANT

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4ACA6-F1-model_v2	AlphaFold	D4ACA6	1-1089	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13694720

Promoter ID:

EPDNEW_R5245

Type:

single initiation site

Name:

Elmsan1_1

Description:

ELM2 and Myb/SANT domain containing 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	107,677,972 - 107,678,032	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-36836	BioCyc
Ensembl Genes	ENSRNOG00000010653	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000014158	ENTREZGENE
	ENSRNOT00000014158.7	UniProtKB/TrEMBL
	ENSRNOT00000135949	ENTREZGENE
Gene3D-CATH	Homeodomain-like	UniProtKB/TrEMBL
InterPro	ELM2	UniProtKB/TrEMBL
	Homeodomain-like	UniProtKB/TrEMBL
	SANT_DNA-bd	UniProtKB/TrEMBL
	SANT_eukarya	UniProtKB/TrEMBL
	Trans_reg/Corepressor	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
KEGG Report	rno:314306	UniProtKB/TrEMBL
NCBI Gene	314306	ENTREZGENE
PANTHER	MITOTIC DEACETYLASE-ASSOCIATED SANT DOMAIN PROTEIN	UniProtKB/TrEMBL
	REST COREPRESSOR COREST PROTEIN-RELATED	UniProtKB/TrEMBL
Pfam	ELM2	UniProtKB/TrEMBL
PhenoGen	Mideas	PhenoGen
PROSITE	ELM2	UniProtKB/TrEMBL
	SANT	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000010653	RatGTEx
SMART	ELM2	UniProtKB/TrEMBL
	SANT	UniProtKB/TrEMBL
Superfamily-SCOP	Homeodomain_like	UniProtKB/TrEMBL
UniProt	A6JDT5	ENTREZGENE, UniProtKB/TrEMBL
	D4ACA6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-11-11	Mideas	mitotic deacetylase associated SANT domain protein	Elmsan1	ELM2 and Myb/SANT domain containing 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2016-03-29	Elmsan1	ELM2 and Myb/SANT domain containing 1	Elmsan1	ELM2 and Myb/SANT-like domain containing 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-10-10	Elmsan1	ELM2 and Myb/SANT-like domain containing 1	RGD1306119	similar to transcriptional regulating protein 132	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1306119	similar to transcriptional regulating protein 132	RGD1306119_predicted	similar to transcriptional regulating protein 132 (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-20	RGD1306119_predicted	similar to transcriptional regulating protein 132 (predicted)	LOC314306_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC314306_predicted	similar to transcriptional regulating protein 132 (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar