TBC1D3P6 (TBC1 domain family member 3 pseudogene 6) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: TBC1D3P6 (TBC1 domain family member 3 pseudogene 6) Homo sapiens
Analyze
Symbol: TBC1D3P6
Name: TBC1 domain family member 3 pseudogene 6
RGD ID: 9834962
HGNC Page HGNC:43568
Description: INTERACTS WITH aristolochic acid A
Type: pseudo (Ensembl: unprocessed_pseudogene)
Previously known as: TBC1 domain family, member 3 pseudogene 6
Related Functional Gene: TBC1D3  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38115,976,131 - 15,997,206 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl115,989,871 - 15,994,751 (+)EnsemblGRCh38hg38GRCh38
GRCh37116,302,626 - 16,323,701 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1p36.13NCBI
HuRef114,818,906 - 14,842,737 (+)NCBIHuRef
CHM1_1116,101,158 - 16,122,232 (+)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Variants

.
Variants in TBC1D3P6
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:251
Count of miRNA genes:241
Interacting mature miRNAs:250
Transcripts:ENST00000505954
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 3 6 2
Below cutoff 163 346 108 41 154 23 396 274 234 9 253 117 18 80 302

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000505954
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl115,989,871 - 15,994,751 (+)Ensembl
RefSeq Acc Id: XM_006710073   ⟹   XP_006710136
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
HuRef114,818,906 - 14,842,774 (+)NCBI
RefSeq Acc Id: XM_006711097   ⟹   XP_006711160
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38115,976,131 - 15,997,206 (+)NCBI
RefSeq Acc Id: XM_006726334   ⟹   XP_006726397
Type: CODING
Position: No map positions available.
RefSeq Acc Id: XM_011527577   ⟹   XP_011525879
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
CHM1_1116,101,158 - 16,122,232 (+)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC TBC1D3P6 COSMIC
Ensembl Genes ENSG00000224966 Ensembl
GTEx ENSG00000224966 GTEx
HGNC ID HGNC:43568 ENTREZGENE
Human Proteome Map TBC1D3P6 Human Proteome Map
NCBI Gene TBC1D3P6 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 TBC1D3P6  TBC1 domain family member 3 pseudogene 6    TBC1 domain family, member 3 pseudogene 6  Symbol and/or name change 5135510 APPROVED