Gm15322 (predicted gene 15322) - Rat Genome Database

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Gene: Gm15322 (predicted gene 15322) Mus musculus
Analyze
Symbol: Gm15322
Name: predicted gene 15322
RGD ID: 9599751
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913112,131,445 - 112,186,488 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13112,127,893 - 112,132,097 (+)EnsemblGRCm39 Ensembl
GRCm3813111,994,911 - 112,049,954 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13111,991,466 - 111,995,486 (+)EnsemblGRCm38mm10GRCm38
Celera13116,301,371 - 116,354,879 (+)NCBICelera
Cytogenetic Map13D2.2NCBI
cM Map1363.73NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm15322Mousebiological_process involved_inND 2290270 MGIGO_REF:0000015

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm15322Mousecellular_component is_active_inND 2290270 MGIGO_REF:0000015

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Gm15322Mousemolecular_function enablesND 2290270 MGIGO_REF:0000015

PMID:24316575  



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Variants in Gm15322
2318 total Variants

Predicted Target Of
Summary Value
Count of predictions:71
Count of miRNA genes:71
Interacting mature miRNAs:71
Transcripts:ENSMUST00000142621
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 26 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
4142334Svtms_msurvival time modifier of Sod2 (mouse)Not determined13107613580119476372Mouse
1558741Ses10_msalmonella enteritidis susceptibility 10 (mouse)Not determined1382739968116740106Mouse
10043997Bw40_mbody weight QTL 40 (mouse)Not determined1479239045113239162Mouse
1301142Heal2_mwound healing/regeneration 2 (mouse)Not determined1393875267120883175Mouse
1357468Rplag_mreduced platelet aggregation (mouse)Not determined1395502130120883175Mouse
12879496Fexq2_mfear expression QTL 2 (mouse)13100741519120883175Mouse
13824989Pbsq1_mpercent broken sperm QTL 1 (mouse)13102136508112136534Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
1300939Hrtfm6_mheart failure modifier 6 (mouse)Not determined1391383692120883175Mouse

1 to 10 of 26 rows





RefSeq Transcripts XR_382921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC119266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02029555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000142621
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13112,127,944 - 112,132,097 (+)Ensembl
GRCm38.p6 Ensembl13111,991,466 - 111,995,486 (+)Ensembl
Ensembl Acc Id: ENSMUST00000270533
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13112,127,893 - 112,132,097 (+)Ensembl
RefSeq Acc Id: XR_382921
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913112,131,445 - 112,186,488 (+)NCBI
GRCm3813111,994,911 - 112,049,954 (+)NCBI
Sequence:


Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000086402 Ensembl
MGD MGI:3705208 ENTREZGENE
NCBI Gene Gm15322 ENTREZGENE
PhenoGen Gm15322 PhenoGen
RNAcentral URS000076C48C RNACentral