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Gene: Garin3 (golgi associated RAB2 interactor family member 3) Chinchilla lanigera

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Symbol:

Garin3

Name:

golgi associated RAB2 interactor family member 3

RGD ID:

9055715

Description:

INVOLVED IN acrosome assembly (ortholog); cell morphogenesis (ortholog); gene expression (ortholog); ASSOCIATED WITH lymphoproliferative syndrome 1 (ortholog); FOUND IN Golgi apparatus (ortholog); sperm head (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

Fam71b; family with sequence similarity 71 member B; family with sequence similarity 71, member B; golgi associated RAB2B interactor family member 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	11,368,359 - 11,372,369 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955408	11,368,402 - 11,371,550 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

lymphoproliferative syndrome 1 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

acrosome assembly (ISO)

cell morphogenesis (ISO)

gene expression (ISO)

single fertilization (ISO)

vacuole organization (ISO)

Cellular Component

Golgi apparatus (ISO)

sperm head (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Garin3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	11,368,359 - 11,372,369 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955408	11,368,402 - 11,371,550 (-)	NCBI	ChiLan1.0	ChiLan1.0

GARIN3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	157,161,846 - 157,166,264 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	157,161,846 - 157,166,264 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	156,588,857 - 156,593,275 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	156,521,921 - 156,525,856 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	152,615,874 - 152,619,810 (-)	NCBI		Celera
Cytogenetic Map	5	q33.3	NCBI
HuRef	5	151,677,371 - 151,681,307 (-)	NCBI		HuRef
CHM1_1	5	156,022,055 - 156,025,991 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	157,680,788 - 157,685,206 (-)	NCBI		T2T-CHM13v2.0

Garin3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	46,295,555 - 46,298,812 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	46,287,386 - 46,298,809 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	46,404,728 - 46,407,985 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	46,396,559 - 46,407,982 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	46,218,232 - 46,221,484 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	46,248,153 - 46,251,405 (+)	NCBI		MGSCv36	mm8
Celera	11	50,990,638 - 50,993,887 (+)	NCBI		Celera
Cytogenetic Map	11	B1.1	NCBI
cM Map	11	27.83	NCBI

Garin3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	31,331,196 - 31,334,434 (+)	NCBI		GRCr8
mRatBN7.2	10	30,829,877 - 30,833,115 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	30,829,877 - 30,833,111 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	35,557,466 - 35,560,698 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	4,095,918 - 4,099,150 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	30,532,048 - 30,535,282 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	31,508,549 - 31,511,787 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	31,508,512 - 31,511,788 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	31,323,995 - 31,327,233 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	31,533,267 - 31,536,505 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	10	30,281,793 - 30,285,031 (+)	NCBI		Celera
Cytogenetic Map	10	q21	NCBI

GARIN3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	152,349,706 - 152,362,154 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	150,489,251 - 150,501,701 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	152,563,544 - 152,567,778 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	159,185,386 - 159,189,354 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	159,185,509 - 159,189,258 (-)	Ensembl	panpan1.1		panPan2

GARIN3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	52,979,661 - 52,982,554 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	52,979,616 - 52,982,547 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	52,871,858 - 52,874,755 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	53,416,256 - 53,419,153 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	53,416,165 - 53,419,146 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	53,242,592 - 53,245,488 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	53,349,548 - 53,352,445 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	53,866,443 - 53,869,340 (+)	NCBI		UU_Cfam_GSD_1.0

Garin3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	107,516,989 - 107,520,157 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936515	5,966,423 - 5,969,389 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GARIN3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	66,098,468 - 66,102,878 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	16	66,073,629 - 66,132,170 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	71,865,987 - 71,940,155 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GARIN3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	59,557,349 - 59,561,719 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	59,557,465 - 59,561,334 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666034	18,069,244 - 18,073,305 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Garin3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624733	32,218,061 - 32,221,254 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624733	32,218,203 - 32,249,115 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005376226	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01008308	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01003424	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000021146 ⟹ ENSCLAP00000020945

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955408	11,368,359 - 11,372,369 (-)	Ensembl

RefSeq Acc Id:

XM_005376226 ⟹ XP_005376283

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955408	11,368,402 - 11,371,550 (-)	NCBI

Sequence:

show sequence

TGGTGTGAAGAGATGTAGGCAGAAGCCTTGCAAGGAGATGGTATGTTGCCATCACTCCCTCTCT
CTCTTGGGGACTCAATTTGTAGCTGGCAAAGATGTCTGGAGGAAAAAGAATTCGAAGCAGTGAG
TGTGTGCTGCCTTATTACACAGCCCGCAGCTACCGCTCGATGGGCGTGTTTAATACCTCCATGG
GGGACCTGCAGCGGCAGCTGTACAAGGGAGGAGAGTATGAAATCTTCAAGTATGCACCAATGTT
TGAGAGCGACTTTATCCAGATTAGCAAAAAAGGAGAGGTCATCGATGTGCACAATCGTGTGCGA
ATGGTGACTGTATGCATTGCGTCCACCAGCCCCGTTCTCCCGCTCCCTGACGTCATGCTGCTGG
CCCGGCCAGCTAAAGTCTGTGAAGAGCATGCCAAACGCGGCCTACTCCCCAAAAAAAGAACTCA
GATGCCCAAGAGGACTCTAGAGCTCACCAGGCTACTTCCCTTGAAGTTTGTTAAGATCTCCATC
CACGATCGTGAGAAACAGCAGCTGCGCCTGAAGCTTGCCACAGGCCGAACTTTCTATCTGCAGC
TGTGCCCCTCTTCAGATACGCGCGAAGATCTCTTCTGCTATTGGGAAAAGCTTGTCTATCTCCT
GAGGCCACCAGTCGACAGCTGCAGTAGCACCCCAACTATTCAGACTGGGGATGCAGGCACTCCT
GAGGACATCAAGAGTCTACTGGCTTCAGACCTCTGTGGAGAAGGGGACCAGGATTCTGGGCTTC
TGAAGCTTCATGAGGTGCGTGGAGCCAGCTCTTCTGCTTTTGCTGGGGGAGAGGGAATCCAACT
TGCTGCTCTTGCAGCATCAGCCACAGGAGGAGCAGCAAGGACAGTGGGTGGTGTGGCAGCCGTG
GGGACAACAACCGGTCCTACAGCAGGTACGGCCGTGGCAGGGACAGCGACGCGCCCTGCAGCTG
GTGCGATGAGCATGGCAGCAGCTAAGTCTGCAGGCTCAGGCCAGGTAACCACAGCCCTGGCAGG
GACGGCCATCAAGGAGTCCGGAGAAGGCAGAGCCAGCAAGGCCGTGGCAGCTTCTGCCAGTGTA
TCTGCGGACAATATCAATGTGGCGATGGCGGGCGCTGCAAGCAGCTCCTCAGCGGGAACTTCCA
CGGCGGGTGCCGCCAGTGTCTCCCAGGACAGCATGAATGTGGTTTTTGCAGGCACCATGATGAC
CAAGGCGCCTATGGGAGAAAAAGCTGAAGGGTCAGCGGTGGTACCCGTTGTCTCAGCCTTGCAG
AGTGAAAGCTACATGTGTGAACGGGATGGTAGCCAGAAGGTTTCCCAGGTCAGTGCTGAAGCCA
GGAAGGAGAAAAGGGAAAGAAGAGAAAAGAACAGAACTGCCAGCAGGAAAAGTTCCCATCACCG
CAGGACAGGTGAAAGTCACCGGCACAGGTCAGGTGGGCACAAGAGCCGGAAATCATCATCCCAC
CATTCTGTGTCTGGCCACAGGAGCAAGAGAGAAGAAAAAAAGGAAAAAGGGTCAAGAAAGGCAA
GGAGCAGCAGGGGACGCAGTTCCCCTCACAAAAACGCCAGCCGCAGTTCCTCCAACAAGGGATC
TAGGACCTCTCGCAAAGCAGGGAAAGGACGATCTGCAGCCAGTTCAAGCTCTGTAAGTAAGAAA
TCCAGTAAAATCAGCTCATTTCTGAGGAGCTTCCTAACTGCATCTAGTTCCAAAATAGCCCTTG
GATCACGTGACAGAGAAGTAGACATCATGACAAAGACAGTGGAAAAGCGCAACATAGAGACAAA
GGTGGAAAAGGGCCAGGCAGGTCAGGAGCTGGAGCTCTACGGTACCATGACATCTGAGACAACG
GAAACGATCATCTTTGAAGCCGTATCCATTTAAATAGGAGCCAGGCGGGAAGCTAGAACCGTAA
CAACAGAGAGTTGGGCTCAGGAAAATATCCCCAGTGAGCCCATTACAGTTCAAATAATAAAGGT
CCTACAACTCCAAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005376283	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000020945
	ENSCLAP00000020945.1

RefSeq Acc Id:

XP_005376283 ⟸ XM_005376226

- UniProtKB:

A0A8C2YSX7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSGGKRIRSSECVLPYYTARSYRSMGVFNTSMGDLQRQLYKGGEYEIFKYAPMFESDFIQISKK
GEVIDVHNRVRMVTVCIASTSPVLPLPDVMLLARPAKVCEEHAKRGLLPKKRTQMPKRTLELTR
LLPLKFVKISIHDREKQQLRLKLATGRTFYLQLCPSSDTREDLFCYWEKLVYLLRPPVDSCSST
PTIQTGDAGTPEDIKSLLASDLCGEGDQDSGLLKLHEVRGASSSAFAGGEGIQLAALAASATGG
AARTVGGVAAVGTTTGPTAGTAVAGTATRPAAGAMSMAAAKSAGSGQVTTALAGTAIKESGEGR
ASKAVAASASVSADNINVAMAGAASSSSAGTSTAGAASVSQDSMNVVFAGTMMTKAPMGEKAEG
SAVVPVVSALQSESYMCERDGSQKVSQVSAEARKEKRERREKNRTASRKSSHHRRTGESHRHRS
GGHKSRKSSSHHSVSGHRSKREEKKEKGSRKARSSRGRSSPHKNASRSSSNKGSRTSRKAGKGR
SAASSSSVSKKSSKISSFLRSFLTASSSKIALGSRDREVDIMTKTVEKRNIETKVEKGQAGQEL
ELYGTMTSETTETIIFEAVSI

hide sequence

Ensembl Acc Id:

ENSCLAP00000020945 ⟸ ENSCLAT00000021146

Protein Domains

Golgi associated RAB2 interactor protein-like Rab2B-

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000014348	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000021146	ENTREZGENE
	ENSCLAT00000021146.1	UniProtKB/TrEMBL
InterPro	DUF3699	UniProtKB/TrEMBL
NCBI Gene	Fam71b	ENTREZGENE
PANTHER	PROTEIN FAM71B	UniProtKB/TrEMBL
	UNCHARACTERIZED	UniProtKB/TrEMBL
Pfam	DUF3699	UniProtKB/TrEMBL
UniProt	A0A8C2YSX7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2024-03-06	Garin3	golgi associated RAB2 interactor family member 3	Garin3	golgi associated RAB2B interactor family member 3	Symbol and/or name change	5135510	APPROVED
2021-11-30	Garin3	golgi associated RAB2B interactor family member 3	Fam71b	family with sequence similarity 71 member B	Symbol and/or name change	5135510	APPROVED
2016-08-16	Fam71b	family with sequence similarity 71 member B		family with sequence similarity 71, member B	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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