Tdrd15 (tudor domain containing 15)

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Gene: Tdrd15 (tudor domain containing 15) Chinchilla lanigera

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Symbol:

Tdrd15

Name:

tudor domain containing 15

RGD ID:

9049323

Description:

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

tudor domain-containing protein 15

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955469	3,542,765 - 3,583,503 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Genomics

Comparative Map Data

Tdrd15
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955469	3,542,765 - 3,583,503 (+)	NCBI	ChiLan1.0	ChiLan1.0

TDRD15
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	21,123,932 - 21,147,325 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	21,123,968 - 21,144,368 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	21,346,840 - 21,367,240 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	21,199,989 - 21,219,649 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	2	21,185,941 - 21,205,599 (+)	NCBI		Celera
Cytogenetic Map	2	p24.1	NCBI
HuRef	2	21,083,138 - 21,093,519 (+)	NCBI		HuRef
CHM1_1	2	21,276,213 - 21,296,590 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	21,157,138 - 21,180,528 (+)	NCBI		T2T-CHM13v2.0

Tdrd15
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	36,461,284 - 36,537,455 (-)	NCBI		GRCr8
mRatBN7.2	6	30,741,956 - 30,818,500 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	30,741,086 - 30,767,049 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	6	33,062,368 - 33,150,553 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	33,062,402 - 33,088,582 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	42,823,637 - 42,871,241 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	6	31,410,314 - 31,416,352 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	6	30,198,223 - 30,273,485 (-)	NCBI		Celera
Cytogenetic Map	6	q14	NCBI

TDRD15
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	105,383,388 - 105,429,379 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	105,387,360 - 105,433,322 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	21,111,290 - 21,133,797 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	21,222,260 - 21,244,300 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	21,237,408 - 21,243,212 (+)	Ensembl	panpan1.1		panPan2

TDRD15
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	15,992,652 - 16,015,284 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	15,958,679 - 16,002,613 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	15,957,291 - 15,979,910 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	16,144,959 - 16,167,574 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	16,096,683 - 16,154,907 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	15,998,458 - 16,021,070 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	16,005,922 - 16,028,325 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	16,037,796 - 16,060,187 (+)	NCBI		UU_Cfam_GSD_1.0

Tdrd15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	60,400,974 - 60,445,628 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936493	10,423,300 - 10,429,569 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936493	10,423,300 - 10,429,569 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TDRD15
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	3	117,182,362 - 117,189,539 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	125,047,603 - 125,054,748 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TDRD15
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	86,523,235 - 86,541,406 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	86,524,788 - 86,530,595 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	25,635,847 - 25,665,680 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tdrd15
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624738	3,686,484 - 3,693,144 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013522573	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01052303	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_013522573 ⟹ XP_013378027

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955469	3,542,765 - 3,583,503 (+)	NCBI

Sequence:

show sequence

CTGAGCAAACAGGAATGCTAACCCTGAAGGTAGCACCGCAAGGCATATTATAGTCCAATCACTT
GCTACCAAATAACTTAAGACAGCTTTACTGAGACATGATTGCGGCACAACAAATTGCATGTATT
TGAAGTGTGGAATTTCATGACACCTGAAACATACATGTATCCATGAAACTACCATAAAATCAAG
ATAATATGTCCATCACGCCCAAAAGTTTCTTTTGGTCCTACCAATCCCATTCCACTCTCTGCAC
CTGTCAGGTATGTACTAATGACCATGAGAATGAATTTCAAGATATAATGAAAAATATAAACAAA
TGTTATGATTCATGTAAAAATGATGAACTGATTCTAAGAAATCCTAAACCTGGAATGTTATGTT
GTGCTAGATACAGCAAGGACAGGTACTTTTACAGAGCTCTCATCACTGAAATTAATGATGATGG
CCAAGCCTTCAGATGTTGTCTTAAGCATTTATTTGAACCAGTTAGTTGTAAATTATTTTGTTGG
ACAAGAGAAGCATCCAGAGACTTTGGAGGTTTTATTTCTTCATCTAGAGGTGGAGTAAAATGGA
ATGAGCCTGCTGAAATATGGGACAGCAAAACTGTGGGTTATTTTGCCTCAATAGCCTTCAGATC
AAGAGGAAATGTAGCTGGGGAACAACTTCTGGGGAGCCTGATCTGCAACTCCACATGATTCAGT
TGATGTGATCTGAGACTTTGTCTAGATGTTGCAATGAAATGAGACCTTGGAGGTCTTAGGGGAG
GAGGTAGAATATTCTGCATGGGAAGGATGTGACTTTGTGGTTAAGGGAGAGACTGTCAGATTGC
ATTTTTAAATTGTCACAGTATTTTCCATTTTCATGTTCTTATCTGATATGATGTTGGCACTGCC
ATCAAAAGGTAGAATATGGTTACCCTTCTCTTGATCTGGGAAGGCTTGTGACCAATATCGTATA
GTAGAAGTAATGTCATGTGACCTTCAAGGCTGGATCGTAAAAGATGATGCATATTTCACCTCTT
TTCACCTTATTGGCCTTTCAAAGCATTTTGTCTTTTTCCCCCATTTAGTTGCTTT

hide sequence

Protein Sequences


Protein RefSeqs	XP_013378027	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_013378027 ⟸ XM_013522573
- Sequence:	show sequence MSITPKSFFWSYQSHSTLCTCQVCTNDHENEFQDIMKNINKCYDSCKNDELILRNPKPGMLCCA RYSKDRYFYRALITEINDDGQAFRCCLKHLFEPVSCKLFCWTREASRDFGGFISSSRGGVKWNE PAEIWDSKTVGYFASIAFRSRGNVAGEQLLGSLICNST hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	LOC102019380	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-08-25	Tdrd15	tudor domain containing 15	LOC102019380	uncharacterized LOC102019380	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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