TDRD15 (tudor domain containing 15) - Rat Genome Database

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Gene: TDRD15 (tudor domain containing 15) Chlorocebus sabaeus
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Symbol: TDRD15
Name: tudor domain containing 15
RGD ID: 18521494
Description: INVOLVED IN P granule organization (inferred); piRNA processing (inferred); spermatogenesis (inferred); FOUND IN P granule (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC103220704; tudor domain-containing protein 15
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11486,523,235 - 86,541,406 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1486,524,788 - 86,530,595 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604525,635,847 - 25,665,680 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
P granule  (IEA)

References

Genomics

Comparative Map Data
TDRD15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11486,523,235 - 86,541,406 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1486,524,788 - 86,530,595 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604525,635,847 - 25,665,680 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TDRD15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38221,123,932 - 21,147,325 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl221,123,968 - 21,144,368 (+)EnsemblGRCh38hg38GRCh38
GRCh37221,346,840 - 21,367,240 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36221,199,989 - 21,219,649 (+)NCBINCBI36Build 36hg18NCBI36
Celera221,185,941 - 21,205,599 (+)NCBICelera
Cytogenetic Map2p24.1NCBI
HuRef221,083,138 - 21,093,519 (+)NCBIHuRef
CHM1_1221,276,213 - 21,296,590 (+)NCBICHM1_1
T2T-CHM13v2.0221,157,138 - 21,180,528 (+)NCBIT2T-CHM13v2.0
Tdrd15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8636,461,284 - 36,537,455 (-)NCBIGRCr8
mRatBN7.2630,741,956 - 30,818,500 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl630,741,086 - 30,767,049 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0633,062,368 - 33,150,553 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl633,062,402 - 33,088,582 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0642,823,637 - 42,871,241 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4631,410,314 - 31,416,352 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera630,198,223 - 30,273,485 (-)NCBICelera
Cytogenetic Map6q14NCBI
Tdrd15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554693,542,765 - 3,583,503 (+)NCBIChiLan1.0ChiLan1.0
TDRD15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212105,383,388 - 105,429,379 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A105,387,360 - 105,433,322 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A21,111,290 - 21,133,797 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A21,222,260 - 21,244,300 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A21,237,408 - 21,243,212 (+)Ensemblpanpan1.1panPan2
TDRD15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11715,992,652 - 16,015,284 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1715,958,679 - 16,002,613 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1715,957,291 - 15,979,910 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01716,144,959 - 16,167,574 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1716,096,683 - 16,154,907 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11715,998,458 - 16,021,070 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01716,005,922 - 16,028,325 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01716,037,796 - 16,060,187 (+)NCBIUU_Cfam_GSD_1.0
Tdrd15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629260,400,974 - 60,445,628 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649310,423,300 - 10,429,569 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649310,423,300 - 10,429,569 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TDRD15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.13117,182,362 - 117,189,539 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23125,047,603 - 125,054,748 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Tdrd15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247383,686,484 - 3,693,144 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
4 17 17 17 4

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007971351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCSAT00000018155   ⟹   ENSCSAP00000017619
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1486,524,788 - 86,530,595 (-)Ensembl
RefSeq Acc Id: XM_007971351   ⟹   XP_007969542
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11486,523,235 - 86,541,406 (-)NCBI
Vero_WHO_p1.0NW_02366604525,635,847 - 25,665,680 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007969542 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000017619.1
RefSeq Acc Id: XP_007969542   ⟸   XM_007971351
- UniProtKB: A0A0D9S9T0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000017619   ⟸   ENSCSAT00000018155


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000000380 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000018155.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.140 UniProtKB/TrEMBL
  2.40.50.90 UniProtKB/TrEMBL
InterPro SNase_OB-fold_sf UniProtKB/TrEMBL
  Tudor UniProtKB/TrEMBL
  Tudor_domain_containing UniProtKB/TrEMBL
  Tudor_TDRD15_rpt1 UniProtKB/TrEMBL
  Tudor_TDRD15_rpt2 UniProtKB/TrEMBL
  Tudor_TDRD15_rpt3 UniProtKB/TrEMBL
  Tudor_TDRD15_rpt4 UniProtKB/TrEMBL
  Tudor_TDRD15_rpt7 UniProtKB/TrEMBL
KEGG Report csab:103220704 UniProtKB/TrEMBL
NCBI Gene LOC103220704 ENTREZGENE
PANTHER FI20010P1 UniProtKB/TrEMBL
  TUDOR DOMAIN CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam TUDOR UniProtKB/TrEMBL
PROSITE TUDOR UniProtKB/TrEMBL
SMART TUDOR UniProtKB/TrEMBL
Superfamily-SCOP SSF50199 UniProtKB/TrEMBL
  Tudor/PWWP/MBT UniProtKB/TrEMBL
UniProt A0A0D9S9T0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-08 TDRD15  tudor domain containing 15  LOC103220704  tudor domain-containing protein 15  Symbol and/or name change 5135510 APPROVED