Mybph (myosin binding protein H) - Rat Genome Database

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Gene: Mybph (myosin binding protein H) Chinchilla lanigera
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Symbol: Mybph
Name: myosin binding protein H
RGD ID: 9026085
Description: ASSOCIATED WITH familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); hypertension (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: myosin-binding protein H
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540639,184,691 - 39,191,741 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540639,174,864 - 39,191,969 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Mybph
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540639,184,691 - 39,191,741 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540639,174,864 - 39,191,969 (-)NCBIChiLan1.0ChiLan1.0
MYBPH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381203,167,811 - 203,179,214 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1203,167,811 - 203,175,826 (-)EnsemblGRCh38hg38GRCh38
GRCh371203,136,939 - 203,144,954 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361201,403,562 - 201,411,565 (-)NCBINCBI36Build 36hg18NCBI36
Build 341199,868,595 - 199,876,599NCBI
Celera1176,266,180 - 176,274,183 (-)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1174,302,068 - 174,310,071 (-)NCBIHuRef
CHM1_11204,559,258 - 204,567,263 (-)NCBICHM1_1
T2T-CHM13v2.01202,430,562 - 202,441,596 (-)NCBIT2T-CHM13v2.0
Mybph
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391134,121,159 - 134,128,975 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1134,121,186 - 134,128,970 (+)EnsemblGRCm39 Ensembl
GRCm381134,193,418 - 134,201,237 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1134,193,448 - 134,201,232 (+)EnsemblGRCm38mm10GRCm38
MGSCv371136,090,025 - 136,097,809 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361136,009,859 - 136,017,643 (+)NCBIMGSCv36mm8
Celera1136,805,964 - 136,813,747 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map158.15NCBI
Mybph
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81348,205,162 - 48,212,928 (+)NCBIGRCr8
mRatBN7.21345,653,156 - 45,660,893 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1345,653,234 - 45,660,893 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1348,261,307 - 48,268,974 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01349,549,364 - 49,557,031 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01346,814,234 - 46,821,893 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01351,034,228 - 51,041,903 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1351,034,256 - 51,041,902 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01356,089,915 - 56,097,580 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41347,151,091 - 47,158,665 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11347,165,133 - 47,172,708 (+)NCBI
Celera1345,981,355 - 45,988,929 (+)NCBICelera
Cytogenetic Map13q13NCBI
MYBPH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2146,202,277 - 46,210,312 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1146,165,749 - 46,179,484 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01178,769,183 - 178,777,737 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11183,065,188 - 183,072,188 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1183,065,021 - 183,072,188 (-)Ensemblpanpan1.1panPan2
MYBPH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1734,181 - 44,479 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl736,428 - 43,803 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha791,094 - 100,208 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0745,844 - 54,962 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl746,099 - 54,286 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1734,076 - 43,199 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.07143,675 - 152,776 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.07166,080 - 175,211 (+)NCBIUU_Cfam_GSD_1.0
Mybph
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934472,187,287 - 72,195,094 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365671,421,927 - 1,429,787 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365671,421,965 - 1,429,771 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYBPH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9113,872,441 - 113,882,719 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19113,872,439 - 113,884,544 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29125,331,945 - 125,341,102 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MYBPH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12526,172,236 - 26,180,502 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2526,172,495 - 26,179,656 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605526,948,542 - 26,956,927 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mybph
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248077,666,174 - 7,678,068 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248077,665,505 - 7,673,819 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000017329   ⟹   ENSCLAP00000017160
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540639,184,691 - 39,191,741 (-)Ensembl
RefSeq Acc Id: XM_005375253   ⟹   XP_005375310
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540639,183,906 - 39,191,968 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005375254   ⟹   XP_005375311
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540639,183,906 - 39,191,968 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005375255   ⟹   XP_005375312
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540639,182,887 - 39,191,968 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013522522   ⟹   XP_013377976
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540639,183,906 - 39,191,969 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013522534   ⟹   XP_013377988
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540639,183,906 - 39,191,969 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001236938
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540639,183,906 - 39,191,969 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001236939
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540639,174,864 - 39,191,969 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001236943
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540639,183,906 - 39,191,969 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001236947
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540639,174,865 - 39,191,968 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005375312   ⟸   XM_005375255
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VRB4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005375311   ⟸   XM_005375254
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VRB4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005375310   ⟸   XM_005375253
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VRB4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013377988   ⟸   XM_013522534
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013377976   ⟸   XM_013522522
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSCLAP00000017160   ⟸   ENSCLAT00000017329
Protein Domains
Fibronectin type-III   Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011779 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000017329 ENTREZGENE
  ENSCLAT00000017329.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Striated_Muscle_Regulatory UniProtKB/TrEMBL
NCBI Gene Mybph ENTREZGENE
PANTHER STRETCHIN-MLCK, ISOFORM U UniProtKB/TrEMBL
  TITIN UniProtKB/TrEMBL
Pfam fn3 UniProtKB/TrEMBL
  I-set UniProtKB/TrEMBL
PRINTS FNTYPEIII UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
  IG_LIKE UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
  IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
UniProt A0A8C2VRB4 ENTREZGENE, UniProtKB/TrEMBL