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Gene: Mybph (myosin binding protein H) Ictidomys tridecemlineatus

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Symbol:

Mybph

Name:

myosin binding protein H

RGD ID:

12575296

Description:

ASSOCIATED WITH familial adult myoclonic epilepsy 5 (ortholog); gastrointestinal stromal tumor (ortholog); hypertension (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

myosin-binding protein H

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	72,187,287 - 72,195,094 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936567	1,421,927 - 1,429,787 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936567	1,421,965 - 1,429,771 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

familial adult myoclonic epilepsy 5 (ISO)

gastrointestinal stromal tumor (ISO)

hypertension (ISO)

Hypokalemic Periodic Paralysis, Type 1 (ISO)

parathyroid carcinoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Mybph
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	72,187,287 - 72,195,094 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936567	1,421,927 - 1,429,787 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936567	1,421,965 - 1,429,771 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MYBPH
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	203,167,811 - 203,179,214 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	203,167,811 - 203,175,826 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	203,136,939 - 203,144,954 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	201,403,562 - 201,411,565 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	199,868,595 - 199,876,599	NCBI
Celera	1	176,266,180 - 176,274,183 (-)	NCBI		Celera
Cytogenetic Map	1	q32.1	NCBI
HuRef	1	174,302,068 - 174,310,071 (-)	NCBI		HuRef
CHM1_1	1	204,559,258 - 204,567,263 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	202,430,562 - 202,441,596 (-)	NCBI		T2T-CHM13v2.0

Mybph
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	134,121,159 - 134,128,975 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	134,121,186 - 134,128,970 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	134,193,418 - 134,201,237 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	134,193,448 - 134,201,232 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	136,090,025 - 136,097,809 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	136,009,859 - 136,017,643 (+)	NCBI		MGSCv36	mm8
Celera	1	136,805,964 - 136,813,747 (+)	NCBI		Celera
Cytogenetic Map	1	E4	NCBI
cM Map	1	58.15	NCBI

Mybph
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	48,205,162 - 48,212,928 (+)	NCBI		GRCr8
mRatBN7.2	13	45,653,156 - 45,660,893 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	45,653,234 - 45,660,893 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	48,261,307 - 48,268,974 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	49,549,364 - 49,557,031 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	46,814,234 - 46,821,893 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	51,034,228 - 51,041,903 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	51,034,256 - 51,041,902 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	56,089,915 - 56,097,580 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	47,151,091 - 47,158,665 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	47,165,133 - 47,172,708 (+)	NCBI
Celera	13	45,981,355 - 45,988,929 (+)	NCBI		Celera
Cytogenetic Map	13	q13	NCBI

Mybph
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	39,184,691 - 39,191,741 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955406	39,174,864 - 39,191,969 (-)	NCBI	ChiLan1.0	ChiLan1.0

MYBPH
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	46,202,277 - 46,210,312 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	46,165,749 - 46,179,484 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	178,769,183 - 178,777,737 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	183,065,188 - 183,072,188 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	183,065,021 - 183,072,188 (-)	Ensembl	panpan1.1		panPan2

MYBPH
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	34,181 - 44,479 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	36,428 - 43,803 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	91,094 - 100,208 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	45,844 - 54,962 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	46,099 - 54,286 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	34,076 - 43,199 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	143,675 - 152,776 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	166,080 - 175,211 (+)	NCBI		UU_Cfam_GSD_1.0

MYBPH
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	113,872,441 - 113,882,719 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	113,872,439 - 113,884,544 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	125,331,945 - 125,341,102 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MYBPH
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	26,172,236 - 26,180,502 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	26,172,495 - 26,179,656 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	26,948,542 - 26,956,927 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mybph
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624807	7,666,174 - 7,678,068 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624807	7,665,505 - 7,673,819 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005330322	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040278726	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000005221 ⟹ ENSSTOP00000004684

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936567	1,421,927 - 1,429,787 (+)	Ensembl

RefSeq Acc Id:

XM_005330322 ⟹ XP_005330379

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	72,187,287 - 72,195,094 (+)	NCBI
SpeTri2.0	NW_004936567	1,421,965 - 1,429,771 (+)	NCBI

Sequence:

show sequence

GTCCCAGACACCCTGGAGGCTCAGACCCTCCACTGCTGACCCCGGCAGGCCCCAGCCTCACCCT
CTACAGCCCAACAATGACAGGAGAGGCCACCTCCGAGGCCACTGCCTCTGGTCCAGAGGAGACG
GCACCTGAGTCTGTCAGTGTGCCCATCACAGAGCCTTCTGGAGAAGTGGCAGCATCGGAGTCCA
AAGGAGAAGAACAGGCTCAGGAGTCCCAGGAGCCCCAGGACCCTGCTTCTCAGGCACCGGCCCC
CACAGCTCCCGCCGTCACTAAGCCTGCACCCCCAAGCGAAGATGTCCCCAGCGCACCGCTGCTG
CTGACCGTGGAGGATGTGAGCAGCAGCTCCGTGACTGTGAGCTGGGAGCCCCCGGAGAAGCTGG
GGAGGCTGGGGCTCCAGGGCTACGTGGTGGAGATCTGCAGAGAGGGAACCTCAGAGTGGGTCCC
TGTGAATGCCCGGCCCATGATGGTGACCCAGCAGATCTTGCGGAACCTGGCTCTAGGGGACAAG
TTCTTCCTGCGTGTGGCCGCAGTGAGCTCCGCGGGGGCTGGTCCACCTGCAGTGCTGGACCAGC
CTGTCCACATCCAGGAGATCATAGAGCCCCCCAAGATCCGTGTCCCCCGCCACCTTCGGCAGAC
TTACATCCGCCAGGTGGGAGAGTCGATCAACCTTCAAATCCCCTTCCAGGGGAAGCCCAAGCCT
CAGGCCTCATGGACACACAACGGCCAAGCCTTGGACAGCAAGCGGGTAAACGTGCGCAGCGGGG
ACCAGGATTCCATCCTCTTCATCCGCTCCGCCCAGCGCTCTGACTCAGGCCGCTATGAACTCAC
TGTGAGGCTGGAAGGTCTGGAGGCCAAGGCAGCCATCGACATCCTGGTGATTGAGAAGCCTGGG
CCCCCCAGCAGCATCAAGCTACTGGACGTGTGGGGTTGCAATGCTGCCCTTGAGTGGACACCAC
CCCAGGACACGGGCAACACAGAGCTCCTGGGCTACACGGTGCAGAAGGCAGACAAAAAGACAGG
GCAATGGTTCACAGTGTTGGAGCGCTACCACCCAACCACCTGCACCATCTCCCACCTCATCATT
GGCAACTCGTACTACTTCCGGGTCTTCTCAGAAAACCTGTGTGGCCTCAGCGACTCAGCCACCT
CCACCAAGGAGCTCGCCCACATCCAGAAGGCAGATATTGCTGCCAAACCTAAAGGGTTCATTGA
GCGAGACTTCTCGGAAGCCCCCTCGTTCACTCAGCCCCTGGCTGACCACACCTCCACCCCCGGC
TACAGCACTCAGCTCTTCTGCAGCGTCAGAGCATCGCCCAAGCCCAAGATCATCTGGATGAAAA
ACCAAATGAACATCCAGGGGGACCCCAAATACCGTGCCCTCTCTGAGCAAGGGGTCTGCACCCT
GGAGATCCGGAAACCCAGCCCCTTTGATTCCGGGGTCTACACCTGCAAGGCCATCAACGTGCTG
GGGGAGGCATCTGTGGATTGCCGGCTGGAAGTCAAAGCCTCAGCCACACACTGAAGAGCAATGG
AGGAGGCTGGTGTGTGGAGACAGGTCCTGCAGGCCTGAGGGGTCCGTCCCCCAGGTCCAAAATC
TAGCTCAGAAGACACCAAATGACCTGCATGTCCATAGCAACAACTGATGGAACCGCCCCTACCT
GATGACCTCCCGTCCCCGGAGGCTGGAGTTCAGAACTCAGGAGAGGGCCTGGCGGGCCCCAGGT
CAGGCATTCTGGGCACCAGGGAGCCCGGAAGGAACAGAGATTGGAACACCCTGCAGAGTTGTAC
CCTGAGCAAGAAGCACTCAAATAAAGGTGTGTGATGTTACAGT

hide sequence

RefSeq Acc Id:

XM_040278726 ⟹ XP_040134660

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	72,187,287 - 72,195,094 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005330379	(Get FASTA)	NCBI Sequence Viewer
	XP_040134660	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000004684.3
GenBank Protein	KAG3258356	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005330379 ⟸ XM_005330322
- Peptide Label:	isoform X2
- UniProtKB:	I3M5P3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTGEATSEATASGPEETAPESVSVPITEPSGEVAASESKGEEQAQESQEPQDPASQAPAPTAPA VTKPAPPSEDVPSAPLLLTVEDVSSSSVTVSWEPPEKLGRLGLQGYVVEICREGTSEWVPVNAR PMMVTQQILRNLALGDKFFLRVAAVSSAGAGPPAVLDQPVHIQEIIEPPKIRVPRHLRQTYIRQ VGESINLQIPFQGKPKPQASWTHNGQALDSKRVNVRSGDQDSILFIRSAQRSDSGRYELTVRLE GLEAKAAIDILVIEKPGPPSSIKLLDVWGCNAALEWTPPQDTGNTELLGYTVQKADKKTGQWFT VLERYHPTTCTISHLIIGNSYYFRVFSENLCGLSDSATSTKELAHIQKADIAAKPKGFIERDFS EAPSFTQPLADHTSTPGYSTQLFCSVRASPKPKIIWMKNQMNIQGDPKYRALSEQGVCTLEIRK PSPFDSGVYTCKAINVLGEASVDCRLEVKASATH hide sequence

RefSeq Acc Id:	XP_040134660 ⟸ XM_040278726
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSSTOP00000004684 ⟸ ENSSTOT00000005221

Protein Domains

Fibronectin type-III Ig-like

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000005228	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000005221.3	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
InterPro	FN3_dom	UniProtKB/TrEMBL
	FN3_sf	UniProtKB/TrEMBL
	Ig-like_dom	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_I-set	UniProtKB/TrEMBL
	Ig_sub	UniProtKB/TrEMBL
	Ig_sub2	UniProtKB/TrEMBL
NCBI Gene	Mybph	ENTREZGENE
PANTHER	MICROFIBRIL-ASSOCIATED GLYCOPROTEIN 3	UniProtKB/TrEMBL
	TITIN	UniProtKB/TrEMBL
Pfam	fn3	UniProtKB/TrEMBL
	I-set	UniProtKB/TrEMBL
PRINTS	FNTYPEIII	UniProtKB/TrEMBL
PROSITE	FN3	UniProtKB/TrEMBL
	IG_LIKE	UniProtKB/TrEMBL
SMART	FN3	UniProtKB/TrEMBL
	IGc2	UniProtKB/TrEMBL
	SM00409	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48726	UniProtKB/TrEMBL
	SSF49265	UniProtKB/TrEMBL
UniProt	I3M5P3	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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