Lhfpl5 (LHFPL tetraspan subfamily member 5) - Rat Genome Database

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Gene: Lhfpl5 (LHFPL tetraspan subfamily member 5) Chinchilla lanigera
Analyze
Symbol: Lhfpl5
Name: LHFPL tetraspan subfamily member 5
RGD ID: 9015181
Description: INVOLVED IN auditory receptor cell stereocilium organization (ortholog); detection of mechanical stimulus involved in sensory perception of sound (ortholog); sensory perception of sound (ortholog); ASSOCIATED WITH autosomal recessive intellectual developmental disorder (ortholog); autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 67 (ortholog); FOUND IN apical plasma membrane (ortholog); plasma membrane (ortholog); stereocilium bundle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: lipoma HMGIC fusion partner-like 5; tetraspan membrane protein of hair cell stereocilia
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554373,644,448 - 3,650,688 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Lhfpl5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554373,644,448 - 3,650,688 (+)NCBIChiLan1.0ChiLan1.0
LHFPL5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38635,805,352 - 35,824,070 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl635,797,206 - 35,845,397 (+)EnsemblGRCh38hg38GRCh38
GRCh37635,773,129 - 35,791,847 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36635,881,049 - 35,899,830 (+)NCBINCBI36Build 36hg18NCBI36
Build 34635,881,048 - 35,899,830NCBI
Celera637,327,661 - 37,346,425 (+)NCBICelera
Cytogenetic Map6p21.31NCBI
HuRef635,491,242 - 35,509,995 (+)NCBIHuRef
CHM1_1635,774,824 - 35,793,580 (+)NCBICHM1_1
T2T-CHM13v2.0635,625,702 - 35,644,396 (+)NCBIT2T-CHM13v2.0
Lhfpl5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391728,794,330 - 28,802,567 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1728,794,615 - 28,804,653 (+)EnsemblGRCm39 Ensembl
GRCm381728,575,369 - 28,583,593 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1728,575,641 - 28,585,679 (+)EnsemblGRCm38mm10GRCm38
MGSCv371728,712,664 - 28,720,538 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361727,780,565 - 27,788,352 (+)NCBIMGSCv36mm8
MGSCv361728,303,321 - 28,311,092 (+)NCBIMGSCv36mm8
Celera1729,129,951 - 29,134,400 (+)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1714.77NCBI
Lhfpl5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8206,634,058 - 6,644,264 (+)NCBIGRCr8
mRatBN7.2206,632,324 - 6,642,534 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl206,632,362 - 6,642,532 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx207,345,236 - 7,355,285 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0206,707,072 - 6,717,122 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0207,186,764 - 7,197,585 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0205,815,837 - 5,826,137 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl205,815,837 - 5,826,137 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0207,851,367 - 7,861,667 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4206,814,056 - 6,824,225 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1206,814,282 - 6,824,452 (+)NCBI
Celera208,188,650 - 8,198,670 (+)NCBICelera
Cytogenetic Map20p12NCBI
LHFPL5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2550,273,564 - 50,291,642 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1646,141,493 - 46,159,560 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0635,367,304 - 35,389,595 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1636,569,008 - 36,589,102 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl636,569,008 - 36,589,102 (+)Ensemblpanpan1.1panPan2
LHFPL5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1124,919,732 - 4,936,823 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl124,902,832 - 4,936,413 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha124,934,745 - 4,951,853 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0125,261,351 - 5,278,696 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl125,261,460 - 5,283,351 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1124,917,192 - 4,934,293 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0124,996,288 - 5,013,405 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0125,097,141 - 5,114,473 (+)NCBIUU_Cfam_GSD_1.0
Lhfpl5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494640,468,584 - 40,481,195 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647623,482,756 - 23,491,811 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647623,479,939 - 23,491,611 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LHFPL5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl731,624,450 - 31,642,268 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1731,624,050 - 31,642,269 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2736,535,889 - 36,568,822 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LHFPL5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11736,295,612 - 36,313,964 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1736,298,479 - 36,313,490 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604435,731,742 - 35,772,825 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lhfpl5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475421,749,312 - 21,762,896 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475421,744,784 - 21,763,161 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013516732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01034330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_013516732   ⟹   XP_013372186
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554373,644,448 - 3,650,688 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013372186 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000015160.1
RefSeq Acc Id: XP_013372186   ⟸   XM_013516732
- UniProtKB: A0A8C2VND8 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010444 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000015320.1 UniProtKB/TrEMBL
InterPro LHFPL UniProtKB/TrEMBL
NCBI Gene Lhfpl5 ENTREZGENE
PANTHER LHFPL TETRASPAN SUBFAMILY MEMBER 5 PROTEIN UniProtKB/TrEMBL
  LIPOMA HMGIC FUSION PARTNER-LIKE PROTEIN UniProtKB/TrEMBL
Pfam L_HMGIC_fpl UniProtKB/TrEMBL
UniProt A0A8C2VND8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-06-27 Lhfpl5  LHFPL tetraspan subfamily member 5    lipoma HMGIC fusion partner-like 5  Symbol and/or name change 5135510 APPROVED