Dbndd2 (dysbindin domain containing 2) - Rat Genome Database

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Gene: Dbndd2 (dysbindin domain containing 2) Chinchilla lanigera
Analyze
Symbol: Dbndd2
Name: dysbindin domain containing 2
RGD ID: 8987495
Description: ENCODES a protein that exhibits ATPase binding (ortholog); INVOLVED IN apoptotic process (ortholog); ERK1 and ERK2 cascade (ortholog); monoatomic ion homeostasis (ortholog); ASSOCIATED WITH adenosine deaminase deficiency (ortholog); Experimental Liver Cirrhosis (ortholog); focal epilepsy (ortholog); FOUND IN endoplasmic reticulum (ortholog); lysosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dysbindin (dystrobrevin binding protein 1) domain containing 2; dysbindin domain-containing protein 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544511,931,200 - 11,975,660 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544511,931,996 - 11,936,534 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Dbndd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544511,931,200 - 11,975,660 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544511,931,996 - 11,936,534 (-)NCBIChiLan1.0ChiLan1.0
DBNDD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382045,405,993 - 45,410,610 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2045,406,057 - 45,410,610 (+)EnsemblGRCh38hg38GRCh38
GRCh372044,034,633 - 44,039,250 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362043,468,085 - 43,472,661 (+)NCBINCBI36Build 36hg18NCBI36
Build 342043,425,114 - 43,431,263NCBI
Celera2040,743,180 - 40,747,756 (+)NCBICelera
Cytogenetic Map20q13.12NCBI
HuRef2040,776,125 - 40,780,742 (+)NCBIHuRef
CHM1_12043,937,170 - 43,941,787 (+)NCBICHM1_1
T2T-CHM13v2.02047,141,855 - 47,146,472 (+)NCBIT2T-CHM13v2.0
Dbndd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392164,309,073 - 164,335,243 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2164,328,026 - 164,335,239 (+)EnsemblGRCm39 Ensembl
GRCm382164,467,153 - 164,493,323 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2164,486,106 - 164,493,319 (+)EnsemblGRCm38mm10GRCm38
MGSCv372164,311,640 - 164,318,823 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362164,171,646 - 164,181,968 (+)NCBIMGSCv36mm8
Celera2170,423,165 - 170,430,358 (+)NCBICelera
Cytogenetic Map2H3NCBI
cM Map285.17NCBI
Dbndd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83173,634,551 - 173,639,999 (+)NCBIGRCr8
mRatBN7.23153,216,300 - 153,220,651 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3153,191,090 - 153,220,651 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3157,027,895 - 157,030,654 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03165,526,852 - 165,529,611 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03163,270,495 - 163,273,254 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03160,933,833 - 160,938,468 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3160,935,709 - 160,938,467 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03167,091,378 - 167,118,754 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43155,509,140 - 155,511,899 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3151,829,203 - 151,831,962 (+)NCBICelera
Cytogenetic Map3q42NCBI
DBNDD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22151,141,392 - 51,146,004 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12051,134,500 - 51,139,112 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02041,738,913 - 41,743,520 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12042,828,136 - 42,833,333 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2042,829,178 - 42,833,333 (+)Ensemblpanpan1.1panPan2
DBNDD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12432,661,966 - 32,701,789 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2432,697,708 - 32,700,203 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2432,340,349 - 32,345,274 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02433,405,822 - 33,410,754 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2433,372,082 - 33,411,668 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12432,667,014 - 32,671,933 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02432,782,615 - 32,787,537 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02433,327,472 - 33,331,798 (+)NCBIUU_Cfam_GSD_1.0
Dbndd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640192,035,029 - 192,045,621 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365147,488,679 - 7,526,802 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365147,488,672 - 7,499,238 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DBNDD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1747,725,132 - 47,729,668 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11747,686,220 - 47,729,663 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21767,792,650 - 67,795,261 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DBNDD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1218,424,594 - 18,429,086 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605067,066,329 - 67,071,031 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dbndd2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247909,091,461 - 9,095,722 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247909,091,461 - 9,095,889 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000013361   ⟹   ENSCLAP00000013210
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495544511,931,200 - 11,975,244 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000013362   ⟹   ENSCLAP00000013211
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495544511,970,249 - 11,975,660 (-)Ensembl
RefSeq Acc Id: XM_013518316   ⟹   XP_013373770
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544511,931,996 - 11,936,534 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013518317   ⟹   XP_013373771
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544511,931,996 - 11,935,513 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013373770 (Get FASTA)   NCBI Sequence Viewer  
  XP_013373771 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000013210
  ENSCLAP00000013210.1
RefSeq Acc Id: XP_013373770   ⟸   XM_013518316
- UniProtKB: A0A8C2VBR0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013373771   ⟸   XM_013518317
- UniProtKB: A0A8C2VBR0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000013210   ⟸   ENSCLAT00000013361
Ensembl Acc Id: ENSCLAP00000013211   ⟸   ENSCLAT00000013362


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009121 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000013361 ENTREZGENE
  ENSCLAT00000013361.1 UniProtKB/TrEMBL
InterPro Dysbindin UniProtKB/TrEMBL
NCBI Gene Dbndd2 ENTREZGENE
PANTHER DYSBINDIN DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
  PTHR16294 UniProtKB/TrEMBL
Pfam Dysbindin UniProtKB/TrEMBL
UniProt A0A8C2VBR0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Dbndd2  dysbindin domain containing 2    dysbindin (dystrobrevin binding protein 1) domain containing 2  Symbol and/or name change 5135510 APPROVED