Advanced Search (OLGA)

Gene: Fndc5 (fibronectin type III domain containing 5) Chinchilla lanigera

Analyze

Symbol:

Fndc5

Name:

fibronectin type III domain containing 5

RGD ID:

8975191

Description:

INVOLVED IN positive regulation of brown fat cell differentiation (ortholog); response to muscle activity (ortholog); ASSOCIATED WITH Cardiomegaly (ortholog); Charcot-Marie-Tooth disease dominant intermediate C (ortholog); endomyocardial fibrosis (ortholog); FOUND IN endoplasmic reticulum (ortholog); extracellular region (ortholog); plasma membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

fibronectin type III domain-containing protein 5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	11,120,823 - 11,126,877 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955452	11,120,823 - 11,127,010 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Cardiomegaly (ISO)

Charcot-Marie-Tooth disease dominant intermediate C (ISO)

endomyocardial fibrosis (ISO)

hypertension (ISO)

Inflammation (ISO)

Ventricular Dysfunction, Left (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of brown fat cell differentiation (ISO)

response to muscle activity (ISO)

Cellular Component

endoplasmic reticulum (ISO)

extracellular region (ISO)

plasma membrane (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Fndc5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	11,120,823 - 11,126,877 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955452	11,120,823 - 11,127,010 (-)	NCBI	ChiLan1.0	ChiLan1.0

FNDC5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	32,862,268 - 32,872,484 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	32,862,268 - 32,872,482 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	33,327,869 - 33,338,085 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	33,100,464 - 33,108,934 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	32,996,969 - 33,005,440	NCBI
Celera	1	31,596,509 - 31,606,718 (-)	NCBI		Celera
Cytogenetic Map	1	p35.1	NCBI
HuRef	1	31,443,482 - 31,467,074 (-)	NCBI		HuRef
CHM1_1	1	33,443,265 - 33,453,515 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	32,722,061 - 32,732,277 (-)	NCBI		T2T-CHM13v2.0

Fndc5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	129,030,672 - 129,038,386 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	129,030,477 - 129,038,386 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	129,136,870 - 129,144,593 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	129,136,999 - 129,144,593 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	128,814,304 - 128,821,837 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	128,639,364 - 128,646,897 (+)	NCBI		MGSCv36	mm8
Celera	4	127,477,236 - 127,484,769 (+)	NCBI		Celera
Cytogenetic Map	4	D2.2	NCBI
cM Map	4	62.93	NCBI

Fndc5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	146,765,951 - 146,775,611 (+)	NCBI		GRCr8
mRatBN7.2	5	141,481,593 - 141,491,257 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	141,481,590 - 141,490,731 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	144,181,715 - 144,188,750 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	145,951,536 - 145,958,571 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	145,951,004 - 145,958,030 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	147,323,240 - 147,330,266 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	147,323,240 - 147,330,266 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	151,057,680 - 151,064,707 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	148,296,328 - 148,304,372 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	148,308,143 - 148,312,519 (+)	NCBI
Celera	5	139,965,061 - 139,970,393 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

FNDC5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	193,951,370 - 193,959,995 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	193,073,575 - 193,082,199 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	32,152,828 - 32,161,447 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	33,338,886 - 33,347,278 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	33,338,886 - 33,347,284 (-)	Ensembl	panpan1.1		panPan2

FNDC5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	68,485,941 - 68,493,491 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	68,485,935 - 68,492,606 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	65,065,786 - 65,073,356 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	69,051,020 - 69,058,589 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	69,050,613 - 69,057,703 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	65,862,540 - 65,870,105 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	66,884,983 - 66,892,545 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	67,876,900 - 67,884,468 (+)	NCBI		UU_Cfam_GSD_1.0

Fndc5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	49,940,375 - 49,951,702 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	15,768,518 - 15,783,999 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	15,765,169 - 15,776,452 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FNDC5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	89,163,378 - 89,171,795 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	89,163,363 - 89,171,871 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	83,190,623 - 83,197,348 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FNDC5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	99,997,627 - 100,007,819 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666033	16,684,569 - 16,693,140 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fndc5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	15,970,991 - 15,976,682 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624764	15,969,640 - 15,976,683 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005395095	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005395096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01044327	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDJ01261961	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000015730 ⟹ ENSCLAP00000015568

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955452	11,120,823 - 11,126,877 (-)	Ensembl

RefSeq Acc Id:

XM_005395095 ⟹ XP_005395152

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955452	11,120,825 - 11,127,010 (-)	NCBI

Sequence:

show sequence

CCACAGCTGAGACCTTGGCCTCCCTCTCCCCCCACAAAGCGTGGCCTTCCCAGGCTTCCCCTTC
TCACTCCTGAGACCGTCGGGTGGGCTCAGCACGGGGATGCTCAAGCTCTGGTGCCTGCCTGCCC
CCCAGACAGCCCTTCAGCCCCAGTGAACGTCACCGTCAGGCACCTGAAGGCCAACTCTGCAGTG
GTCAGCTGGGATGTCCTGGAAGATGAGGTTGTCATTGGATTTGCCATCTCTCAGCAGAAGAAAG
ACGTGAGGATGCTGCGCTTCATCCAGGAAGTGAACACCACCACCCGCTCATGCGCCCTCTGGGA
CCTGGAGGAGGACACGGAGTATATCGTGCATGTACAGGCCATCTCCATTCAGGGACAGAGCCCA
GCCAGCGAGCCGGTGCTCTTCAAGACCCCTCGAGAGGCCGAGAAGATGGCCTCTAAGAACAAAG
ATGAAGTCACCATGAAGGAGATGGGGAAGAACCAACAGCTGCGGACAGGGGAGGTGCTCATCAT
CGTCGTGGTCCTGTTCATGTGGGCAGGTGTCATTGCCCTCTTCTGCCGCCAGTATGACATTATC
AAGGACAATGAACCCAATAACAACAAGGAGAAAACTAAGAGTGCCTCTGAAACCAGCACTCCAG
AGCACCAGGGCGGGGGGCTCCTCCGCAGCAAGTTTCCAAACAAGCCCTCAGTGAACATCATCGA
AGCATGACTGACTGTCTGCAGGGAGAAGGATTTCATTTTTCTTCTCTGCTGGTCTGCGGGTCCT
GAGCACAGGGAGAGGGCCAACTGCAGTCAGGGAGGAGGCACAGCTAGCTGCAGTTCTCCTTCTT
CCCTCTTAGTCTGATGAAAGAGGCTGAACTACAAACCCAAATTCTGCAAAAAAAATAATAATAA
GCCACAAAACTAAAAAGGCCTGGCTCCATCCTGGAAAAGGCAAAGCTGCATGAAACAGCTTTCT
GCCTCCTCATCTCTCCTGGACTGGCTTCCTCTTTGAGAAAATGCACAACGCTCTGGGAGATAAC
AAGCAGTAAGATTGCCTCAAGCTGTCTTTTAGACCGAGGAGCATTGGAGGAGGCCATGGAGCTG
CCTGCCGTGCAGGGTCATGGCTGCTGTGAAGCCTTTTCTGGATGTAGCCATCAAAGACTTGTTT
GTGGTGTGATATACACCTTTGTGAGTGTGTAAGATGTTACCTGTTTTGTCTCTTGAAACACATA
ATTGGAGGGCTCCGTTCCAGAGGACAGAGGGTTCTTCCAAGACTTACGCTGGTTGCCTGTACTC
TCCCTGTCTTCTCTGACATTTACTTTGATGGTAAGATCATCAGTCTGAGGTTTAAAAAGACTTC
GAAGGTACTGACCCTGTTTGTTAAGGAAGCATCTCTTGGAGTTTCAGCAGAGCCAGCTGGGGCA
ACTGAAAAGGCACATCCACATTTTATATCCTAGACTGCTGACCCACCCACTGTGGAGTGGAAGT
TACTGGAAGGCAGGCCTAAGCCATGTACCACAGACAGGCAGAGCAGCCTGGCTGTCACAACTAG
CCTCTAGAGTCTCCATATCTTACCATCTCATCAGGATTCTGGGAAAGTTACCCAGGGTCTTCAT
GTCCTTCCCTAGAGCCTGAGTGGTATGAGGTGACAGGTCTCTCTCTCCACTGCCCCTTTCTGGT
TAAAAAACAAACTAACAAACAATGGTGCTTGATGAGGGGAGGCAAACTCTTCCCTGGGATTGGT
GAGTTACAGCTGCCAGATGCCTGCACGGGAAGAGGTGGACTCTGCGTCTTCCACTGGTGACCAA
GAAGAGGAGGGTAGAGGATGTGCCTAGCACAAGGCTGATACACAGTAGGTACTTGGGCAATATT
TGCTGTGCTGAATGTGAAGAGCACTGGCCCCCAAGACAGAGAGCTGAAAGCCATCACCCAATGC
CCATCCCTTCCTTCCAGTGTTTAAGCGCTCTCAAGGCTGGCTCAGCCACCACTCTGCTTCAGCC
AAGTGTGGAAGCACAGGGGAGGAGAGACAGGGTAAAAGGCAGATGTCAGCAATACCAAGGGCTT
CCTCATGGGAGGGCATGAGGCTCCACTCATTGTCTTGTGACTTCCATCCCTGCTGAATGGGGCT
GCGAGGCCAAGGCTCCTTACGGGAGAGGTCCTTACCTCTGATCCAGTTAGAGCAATAACCACTT
TTTAAACATAAAATAAAAAGACAAATGAAAAGGCACATCCTTGTCTCCTGGTAAATGCCCAAAT
GTTGCCCTCTTTTTCTGGCAATTGGCAGCAAGTCAGGATGTGTGGAGGAGGGAATCAGTTCTCT
CTTCCATTTTGGCCTGCAGTCTCTTAGGGACATGCCTGCCAGCCAAGCTGGAGTTGGAAGGGAA
TTCTTGAACAGATGGGGGTGCACGTGTAG

hide sequence

RefSeq Acc Id:

XM_005395096 ⟹ XP_005395153

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955452	11,120,823 - 11,126,843 (-)	NCBI

Sequence:

show sequence

GCACCTGAAGGCCAACTCTGCAGTGGTCAGCTGGGATGTCCTGGAAGATGAGGTTGTCATTGGA
TTTGCCATCTCTCAGCAGAAGAAAGACGTGAGGATGCTGCGCTTCATCCAGGAAGTGAACACCA
CCACCCGCTCATGCGCCCTCTGGGACCTGGAGGAGGACACGGAGTATATCGTGCATGTACAGGC
CATCTCCATTCAGGGACAGAGCCCAGCCAGCGAGCCGGTGCTCTTCAAGACCCCTCGAGAGGCC
GAGAAGATGGCCTCTAAGAACAAAGATGAAGTCACCATGAAGGAGATGGGGAAGAACCAACAGC
TGCGGACAGGGGAGGTGCTCATCATCGTCGTGGTCCTGTTCATGTGGGCAGGTGTCATTGCCCT
CTTCTGCCGCCAGTATGACATTATCAAGGACAATGAACCCAATAACAACAAGGAGAAAACTAAG
AGTGCCTCTGAAACCAGCACTCCAGAGCACCAGGGCGGGGGGCTCCTCCGCAGCAAGATATGAA
ATCCTTTCAGTGCTTGCTCTGAGCAGCTCAGAAGACAGTAGAGAATGAGAGGATCTCATGATTC
TGACGATGATTATCCAACAAACATCTGGCCCTCTCTGCATCTCCTCCTCCTTCCATCTTGTACC
CTCTGGCTTACTGTCCGCTCTCTCGGCTTCTCTCTTTCTGGCACCTTTTCCTGAAGCCTCTTAT
TGACCCCTATTTCCAGAAACACTTCGACAATGTCAGTGGCTGAGGCTGTGCCTAGAGGCATATC
TGCAGGATGTGAGCAAACCAGCCAGAGGGATGACTGCTGGGGGGAGAGTGGGCACCAGGGCGCT
GAGCCCAGGACTCAGGTTTGGCCATTCAGCTGAGTGAGGCCGAAGGCTGGGCTGGAAAAGGCAG
ACAGACAAGATCTCCAGGGAGGGCTGCTCTTCTTTCCGCAAGGGACAAGAGCCTGGCTTTTAGG
CTGCAGCTCTGCTGGCTCCCTTCCTCCTCCAGCCCTGTTTCCTCCCTTGCAAGAAGTCTATTCA
ATTGGCTTTGGCCACTTCTCTCATTTCTTTCCTCCCAGTTTCCAAACAAGCCCTCAGTGAACAT
CATCGAAGCATGACTGACTGTCTGCAGGGAGAAGGATTTCATTTTTCTTCTCTGCTGGTCTGCG
GGTCCTGAGCACAGGGAGAGGGCCAACTGCAGTCAGGGAGGAGGCACAGCTAGCTGCAGTTCTC
CTTCTTCCCTCTTAGTCTGATGAAAGAGGCTGAACTACAAACCCAAATTCTGCAAAAAAAATAA
TAATAAGCCACAAAACTAAAAAGGCCTGGCTCCATCCTGGAAAAGGCAAAGCTGCATGAAACAG
CTTTCTGCCTCCTCATCTCTCCTGGACTGGCTTCCTCTTTGAGAAAATGCACAACGCTCTGGGA
GATAACAAGCAGTAAGATTGCCTCAAGCTGTCTTTTAGACCGAGGAGCATTGGAGGAGGCCATG
GAGCTGCCTGCCGTGCAGGGTCATGGCTGCTGTGAAGCCTTTTCTGGATGTAGCCATCAAAGAC
TTGTTTGTGGTGTGATATACACCTTTGTGAGTGTGTAAGATGTTACCTGTTTTGTCTCTTGAAA
CACATAATTGGAGGGCTCCGTTCCAGAGGACAGAGGGTTCTTCCAAGACTTACGCTGGTTGCCT
GTACTCTCCCTGTCTTCTCTGACATTTACTTTGATGGTAAGATCATCAGTCTGAGGTTTAAAAA
GACTTCGAAGGTACTGACCCTGTTTGTTAAGGAAGCATCTCTTGGAGTTTCAGCAGAGCCAGCT
GGGGCAACTGAAAAGGCACATCCACATTTTATATCCTAGACTGCTGACCCACCCACTGTGGAGT
GGAAGTTACTGGAAGGCAGGCCTAAGCCATGTACCACAGACAGGCAGAGCAGCCTGGCTGTCAC
AACTAGCCTCTAGAGTCTCCATATCTTACCATCTCATCAGGATTCTGGGAAAGTTACCCAGGGT
CTTCATGTCCTTCCCTAGAGCCTGAGTGGTATGAGGTGACAGGTCTCTCTCTCCACTGCCCCTT
TCTGGTTAAAAAACAAACTAACAAACAATGGTGCTTGATGAGGGGAGGCAAACTCTTCCCTGGG
ATTGGTGAGTTACAGCTGCCAGATGCCTGCACGGGAAGAGGTGGACTCTGCGTCTTCCACTGGT
GACCAAGAAGAGGAGGGTAGAGGATGTGCCTAGCACAAGGCTGATACACAGTAGGTACTTGGGC
AATATTTGCTGTGCTGAATGTGAAGAGCACTGGCCCCCAAGACAGAGAGCTGAAAGCCATCACC
CAATGCCCATCCCTTCCTTCCAGTGTTTAAGCGCTCTCAAGGCTGGCTCAGCCACCACTCTGCT
TCAGCCAAGTGTGGAAGCACAGGGGAGGAGAGACAGGGTAAAAGGCAGATGTCAGCAATACCAA
GGGCTTCCTCATGGGAGGGCATGAGGCTCCACTCATTGTCTTGTGACTTCCATCCCTGCTGAAT
GGGGCTGCGAGGCCAAGGCTCCTTACGGGAGAGGTCCTTACCTCTGATCCAGTTAGAGCAATAA
CCACTTTTTAAACATAAAATAAAAAGACAAATGAAAAGGCACATCCTTGTCTCCTGGTAAATGC
CCAAATGTTGCCCTCTTTTTCTGGCAATTGGCAGCAAGTCAGGATGTGTGGAGGAGGGAATCAG
TTCTCTCTTCCATTTTGGCCTGCAGTCTCTTAGGGACATGCCTGCCAGCCAAGCTGGAGTTGGA
AGGGAATTCTTGAACAGATGGGGGTGCACGTGTAGGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005395152	(Get FASTA)	NCBI Sequence Viewer
	XP_005395153	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000015568.1

RefSeq Acc Id:	XP_005395152 ⟸ XM_005395095
- Peptide Label:	isoform X2
- Sequence:	show sequence MLRFIQEVNTTTRSCALWDLEEDTEYIVHVQAISIQGQSPASEPVLFKTPREAEKMASKNKDEV TMKEMGKNQQLRTGEVLIIVVVLFMWAGVIALFCRQYDIIKDNEPNNNKEKTKSASETSTPEHQ GGGLLRSKFPNKPSVNIIEA hide sequence

RefSeq Acc Id:	XP_005395153 ⟸ XM_005395096
- Peptide Label:	isoform X1
- Sequence:	show sequence MLRFIQEVNTTTRSCALWDLEEDTEYIVHVQAISIQGQSPASEPVLFKTPREAEKMASKNKDEV TMKEMGKNQQLRTGEVLIIVVVLFMWAGVIALFCRQYDIIKDNEPNNNKEKTKSASETSTPEHQ GGGLLRSKI hide sequence

Ensembl Acc Id:

ENSCLAP00000015568 ⟸ ENSCLAT00000015730

Protein Domains

Fibronectin type-III

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000010700	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000015730.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
InterPro	FN3_dom	UniProtKB/TrEMBL
	FN3_sf	UniProtKB/TrEMBL
	FNDC5_C	UniProtKB/TrEMBL
	FNDC_type_III	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
NCBI Gene	Fndc5	ENTREZGENE
PANTHER	FIBRONECTIN TYPE III DOMAIN-CONTAINING PROTEIN	UniProtKB/TrEMBL
	FIBRONECTIN TYPE III DOMAIN-CONTAINING PROTEIN 5	UniProtKB/TrEMBL
Pfam	DUF4808	UniProtKB/TrEMBL
	fn3	UniProtKB/TrEMBL
PROSITE	FN3	UniProtKB/TrEMBL
SMART	FN3	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49265	UniProtKB/TrEMBL
UniProt	A0A8C2VPE7_CHILA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD