Cuedc1 (CUE domain containing 1) - Rat Genome Database

Name: Cuedc1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Advanced Search (OLGA)

Gene: Cuedc1 (CUE domain containing 1) Chinchilla lanigera

Analyze

Symbol:

Cuedc1

Name:

CUE domain containing 1

RGD ID:

8942136

Description:

ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); intellectual disability (ortholog); Joubert syndrome 1 (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

CUE domain-containing protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	5,105,123 - 5,120,544 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955451	5,054,633 - 5,124,318 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

hereditary breast ovarian cancer syndrome (ISO)

intellectual disability (ISO)

Joubert syndrome 1 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Cuedc1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955451	5,105,123 - 5,120,544 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955451	5,054,633 - 5,124,318 (+)	NCBI	ChiLan1.0	ChiLan1.0

CUEDC1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	57,861,243 - 57,955,412 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	57,861,243 - 57,955,412 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	55,938,604 - 56,032,773 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	53,295,336 - 53,335,749 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	53,295,335 - 53,335,749	NCBI
Celera	17	52,402,105 - 52,442,530 (-)	NCBI		Celera
Cytogenetic Map	17	q22	NCBI
HuRef	17	51,299,100 - 51,341,254 (-)	NCBI		HuRef
CHM1_1	17	56,003,616 - 56,097,775 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	58,734,503 - 58,828,695 (-)	NCBI		T2T-CHM13v2.0

Cuedc1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	87,989,972 - 88,084,966 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	87,988,884 - 88,084,966 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	88,099,146 - 88,194,140 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	88,098,058 - 88,194,140 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	87,912,648 - 88,007,642 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	87,915,444 - 88,009,110 (+)	NCBI		MGSCv36	mm8
Celera	11	97,701,112 - 97,797,818 (+)	NCBI		Celera
Cytogenetic Map	11	C	NCBI
cM Map	11	52.4	NCBI

Cuedc1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	73,389,798 - 73,484,914 (+)	NCBI		GRCr8
mRatBN7.2	10	72,892,637 - 72,986,546 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	72,892,637 - 72,986,542 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	77,502,980 - 77,596,217 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	77,007,912 - 77,101,147 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	72,472,427 - 72,565,664 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	75,495,817 - 75,516,280 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	75,495,817 - 75,516,304 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	74,590,105 - 74,610,568 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	76,467,673 - 76,488,136 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	76,408,476 - 76,502,502 (+)	NCBI
Celera	10	71,875,454 - 71,895,917 (+)	NCBI		Celera
Cytogenetic Map	10	q26	NCBI

CUEDC1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	74,036,926 - 74,131,517 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	78,847,852 - 78,941,751 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	51,941,043 - 52,034,948 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	56,798,556 - 56,822,922 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	56,798,556 - 56,822,922 (-)	Ensembl	panpan1.1		panPan2

CUEDC1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	32,563,784 - 32,584,116 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	32,565,314 - 32,584,207 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	31,802,497 - 31,822,902 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	33,372,124 - 33,392,522 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	33,373,654 - 33,392,839 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	32,156,619 - 32,177,007 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	32,439,876 - 32,460,268 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	32,523,497 - 32,543,899 (-)	NCBI		UU_Cfam_GSD_1.0

Cuedc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	31,892,522 - 31,954,782 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936490	5,175,058 - 5,182,521 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936490	5,120,268 - 5,182,523 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CUEDC1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	34,141,649 - 34,167,930 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	34,141,649 - 34,167,731 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	34,964,028 - 35,053,237 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CUEDC1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	35,444,405 - 35,550,666 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666077	6,261,263 - 6,355,720 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cuedc1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624795	12,743,174 - 12,774,273 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624795	12,743,634 - 12,823,711 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005394044	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005394045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005394046	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01043162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01043163	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCB01001214	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000018506 ⟹ ENSCLAP00000018327

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955451	5,105,123 - 5,120,544 (+)	Ensembl

RefSeq Acc Id:

XM_005394044 ⟹ XP_005394101

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955451	5,097,054 - 5,124,318 (+)	NCBI

Sequence:

show sequence

AACGTGGACCTCGCAGGCTGACAGAGAGGACGGAGAGCTGCCGTGCATATGGCTCTGGGATAGT
GGTTGGCACGGAAGGAGCAGGCAGTGGGACCGTCCCAGAGCCGGCGACAGGATGCCCCGGTGGT
GCGGATGACCTGCATCCAGCCGAGCCCAGTCCAGGCCCGCATGTCGCCGCCCCATGAGTGCCGC
TCCTCGAGGGCCGCCTGGGGCTCCGCGCCCATAGTCTCCTGACCCGGAGCCCCACTGCCCATTG
GCGTACAGAGGAGGAGGCGCAGGGGTGAGCTTCCCGTATCCGCGGAGCAAGCAAGCAAGCAAGC
AAGCAAGCGGCCGACGGCGCAAGGACCAGGAACGAGGGGGCTTCGCGGCCGATCGATCGGAAAC
ATTTTCCCCAAGCGGCTGCACAAAATGACCAGCCTGTTCCGAAGGAGCAGCGGGGGCGGCGGGG
CGGGGGCGCGCGGGGCCGGGGCGGGGACCGGGAGCAGCTCCGCGGCCCCGCAGGAGCTCAACAA
CAGCCGGCCCGCGCGCCAGGTGCGCCGCCTGGAGTTCAACCAGGCCATGGACGACTTCAAGACC
ATGTTCCCCAACATGGACTACGACATCATCGAGTGCGTGCTGCGCGCCAACAGCGGCGCAGTGG
ACGCCACCATCGACCAGCTGCTGCAGATGAACCTGGAGGGGGGCGGCAGCAGCGCCTACGAGGA
CAGCTCCGACTCGGAGGACAGCATCCCCCCAGAGATCTTGGAAAGGACTTTGGAACCTGATAGC
TCCGATGAAGAGCCTCCACCTGTGTACTCCCCTCCGGCCTACCACATGCACGTGTTCGACAGGC
CTTACCCTCTGGCCCCGCCCACTCCACCGCCCCGGATTGATGTGCTGGGCTCCGGGCCCTCTGC
AAGCCAGAGGCGCTATCGGAACTGGAACCCACCGCTGCTGGGCAACCTCCCTGATGACTTTCTC
CGCATCCTGCCCCAGCAGCTGGACAGCATACAGGGTAACCCCCGGTGCACCAAGTCTGTGAGCG
GAGAGGGAGGCCTGCCTCCCACAGCCGGAGACCAGGACAGCCGCTGGAAGCAGTACCTGGAGGA
CGAGAGGATCGCGCTCTTCCTGCAGAACGAGGAGTTCATGAAGGAGCTGCAGCGGAACCGAGAC
TTCCTCCTCGCCTTGGAGAGAGATCGACTGAAATATGAGTCCCAGAAATCCAAATCCAGCAGTG
TGGCGGTGGGAAATGACTTTGGCTTTCCCTCTTCTGTCCCAGCTCAGGGGCCGTCCCTCAGCAG
GTGTCTCCCTCTTCCAGGAAACAGTGATGCCAACCCTGCTGTGTCTGAAGATGCCTTATTCAGG
GACAAGTTGAAACACATGGGAAAATCCACCCGGAGGAAGCTGTTTGAGCTGGCGCGCGCCTTCT
CCGAGAAGACCAAAATGAGGAAGTCCAGGAGGAAGCACTTGCCCAAGCATCAGTCGCTGGGGGC
TGCTGCATCAACAGCCAATCTCCTGGATGACGTGGAGGGCCACGCTTGTGATGAAGACCTCCGG
GGAAGGCGGCAGGAGACACCCAAGATGGAGGAAGCCCTCAGGGAAGGACAGTAAGAGGTGCCAG
CAGCTCCACCTCTCTAGGGATGCTCTGACCCGGCAGGGGCAGCTGGAGAGCAACGCGGCACCCT
GCTGAAGGGCCCGGATGCAGCCAGACTGACGGTGCTTGATTCGGAGGCCGGGTGGTCCTCCAGC
CATGGTCCAGCCCAGCCACTGCCACCTTGCACGGGACCTAGAACTTTGGAGTCGCCATCCTATG
ATTGGAGGAGGGACCTGGGGCCCCTAGAGGGCAGCAGCCAGGCTTTTCTACAGCCGTGGGTGGC
AATGCAGGAGTCACGCCTTTCTTTCTTAAAAAAAAAAAAAAAAAAAATCTGAGGAAGTTCAGAG
GCCGGAGTTTGGGAAAGGGCAGGATCACCCTAAGCAGGCTCTCGGCTGGAGGTGAGCTCCTGCC
TTCTTCCCTCCGCATCTCTCCAGCCGGGCGTCAGACTGCCTCATCTCCTACCCTTGTGTCCGGC
TCTCTAGGCACCTTGGGCCCCTTCTTCCCAAGGCCACCTGCATCTCAGCCTTTCCCGGGGGCTG
CAGGGCCACTTGGAGCCGGGGGGGGGGCAGTGGCGCTCACCAGCGTGCCCTGAGGGGCGACCCT
CAGCACCCCGCTTCCTCCCAATGGGGTGGGAGGAGCTGGAAGACTCTGGCCAGGCAGGGTCTGT
CCCCTAAGGGTGGGCCGCTGGGGGCCGAGAGTGCCGCCTTGGAGAAGGGGCAGCACCGGGTGGG
GGCAGCTGCCAATAGCCAGGAGGTGATGGGAGGAGGAAAATTGTGACTCCACCTATTCTTAACC
ACAAGGCCACTGCTAAGCGGCGGAGGCGCAGCTCTCCCCGGACTGGAGCGCAGCGGGTGCAGCT
TCCGCGCGGGGTTGTGGGTGGTGGGGCTGGGAGTGGGATCCGATACAGTATTTGTTGGGGCATT
GGTGGCCGTGAGGTACTGGGGCGTGGCGAGGGTGAGCCAGGACCTTGCCCTGTTCTGCGCCCCT
CATCCCCTGCACCTCCGCGACTCTGGGGCGGCCAGGCAGCGTGAGGAAGTTGGGAAGCACGGAG
CTGGGGGCTTTGGTCATGAGCCCTCCTACGCTCTTGGCTGGTTCCTGGCATGGCCCGGCGCACT
GAAGGGACGGGGAGCCCCCAGCCGCTAACTTAAGCTCCAGACAGCCTGATCCCGAGGGGCAGAG
GAGGGGCTCTGGGCCGTGACCCTGACTTCTCCCCGGCCAGGGCCAGGCTCAGCGGGAGTAGCCC
CAGCCCCAAGTCTCTGTGTGTTGCTTTATTATTTTTTCCTCCTATGTGTGGGTTTTTTCTTGGA
ACTGTTTCATAGGAACTCCTGTAATAAAGCCTTGGTGTTCTCTTGGTGCTCTGA

hide sequence

RefSeq Acc Id:

XM_005394045 ⟹ XP_005394102

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955451	5,054,633 - 5,124,318 (+)	NCBI

Sequence:

show sequence

GGAGCTGAAAGAGGCGAGGTGGGACCGTCCCAGAGCCGGCGACAGGATGCCCCGGTGGTGCGGA
TGACCTGCATCCAGCCGAGCCCAGTCCAGGCCCGCATGTCGCCGCCCCATGAGTGCCGCTCCTC
GAGGGCCGCCTGGGGCTCCGCGCCCATAGTCTCCTGACCCGGAGCCCCACTGCCCATTGGCGTA
CAGAGGAGGAGGCGCAGGGGTGAGCTTCCCGTATCCGCGGAGCAAGCAAGCAAGCAAGCAAGCA
AGCGGCCGACGGCGCAAGGACCAGGAACGAGGGGGCTTCGCGGCCGATCGATCGGAAACATTTT
CCCCAAGCGGCTGCACAAAATGACCAGCCTGTTCCGAAGGAGCAGCGGGGGCGGCGGGGCGGGG
GCGCGCGGGGCCGGGGCGGGGACCGGGAGCAGCTCCGCGGCCCCGCAGGAGCTCAACAACAGCC
GGCCCGCGCGCCAGGTGCGCCGCCTGGAGTTCAACCAGGCCATGGACGACTTCAAGACCATGTT
CCCCAACATGGACTACGACATCATCGAGTGCGTGCTGCGCGCCAACAGCGGCGCAGTGGACGCC
ACCATCGACCAGCTGCTGCAGATGAACCTGGAGGGGGGCGGCAGCAGCGCCTACGAGGACAGCT
CCGACTCGGAGGACAGCATCCCCCCAGAGATCTTGGAAAGGACTTTGGAACCTGATAGCTCCGA
TGAAGAGCCTCCACCTGTGTACTCCCCTCCGGCCTACCACATGCACGTGTTCGACAGGCCTTAC
CCTCTGGCCCCGCCCACTCCACCGCCCCGGATTGATGTGCTGGGCTCCGGGCCCTCTGCAAGCC
AGAGGCGCTATCGGAACTGGAACCCACCGCTGCTGGGCAACCTCCCTGATGACTTTCTCCGCAT
CCTGCCCCAGCAGCTGGACAGCATACAGGGTAACCCCCGGTGCACCAAGTCTGTGAGCGGAGAG
GGAGGCCTGCCTCCCACAGCCGGAGACCAGGACAGCCGCTGGAAGCAGTACCTGGAGGACGAGA
GGATCGCGCTCTTCCTGCAGAACGAGGAGTTCATGAAGGAGCTGCAGCGGAACCGAGACTTCCT
CCTCGCCTTGGAGAGAGATCGACTGAAATATGAGTCCCAGAAATCCAAATCCAGCAGTGTGGCG
GTGGGAAATGACTTTGGCTTTCCCTCTTCTGTCCCAGCTCAGGGGCCGTCCCTCAGCAGGTGTC
TCCCTCTTCCAGGAAACAGTGATGCCAACCCTGCTGTGTCTGAAGATGCCTTATTCAGGGACAA
GTTGAAACACATGGGAAAATCCACCCGGAGGAAGCTGTTTGAGCTGGCGCGCGCCTTCTCCGAG
AAGACCAAAATGAGGAAGTCCAGGAGGAAGCACTTGCCCAAGCATCAGTCGCTGGGGGCTGCTG
CATCAACAGCCAATCTCCTGGATGACGTGGAGGGCCACGCTTGTGATGAAGACCTCCGGGGAAG
GCGGCAGGAGACACCCAAGATGGAGGAAGCCCTCAGGGAAGGACAGTAAGAGGTGCCAGCAGCT
CCACCTCTCTAGGGATGCTCTGACCCGGCAGGGGCAGCTGGAGAGCAACGCGGCACCCTGCTGA
AGGGCCCGGATGCAGCCAGACTGACGGTGCTTGATTCGGAGGCCGGGTGGTCCTCCAGCCATGG
TCCAGCCCAGCCACTGCCACCTTGCACGGGACCTAGAACTTTGGAGTCGCCATCCTATGATTGG
AGGAGGGACCTGGGGCCCCTAGAGGGCAGCAGCCAGGCTTTTCTACAGCCGTGGGTGGCAATGC
AGGAGTCACGCCTTTCTTTCTTAAAAAAAAAAAAAAAAAAAATCTGAGGAAGTTCAGAGGCCGG
AGTTTGGGAAAGGGCAGGATCACCCTAAGCAGGCTCTCGGCTGGAGGTGAGCTCCTGCCTTCTT
CCCTCCGCATCTCTCCAGCCGGGCGTCAGACTGCCTCATCTCCTACCCTTGTGTCCGGCTCTCT
AGGCACCTTGGGCCCCTTCTTCCCAAGGCCACCTGCATCTCAGCCTTTCCCGGGGGCTGCAGGG
CCACTTGGAGCCGGGGGGGGGGCAGTGGCGCTCACCAGCGTGCCCTGAGGGGCGACCCTCAGCA
CCCCGCTTCCTCCCAATGGGGTGGGAGGAGCTGGAAGACTCTGGCCAGGCAGGGTCTGTCCCCT
AAGGGTGGGCCGCTGGGGGCCGAGAGTGCCGCCTTGGAGAAGGGGCAGCACCGGGTGGGGGCAG
CTGCCAATAGCCAGGAGGTGATGGGAGGAGGAAAATTGTGACTCCACCTATTCTTAACCACAAG
GCCACTGCTAAGCGGCGGAGGCGCAGCTCTCCCCGGACTGGAGCGCAGCGGGTGCAGCTTCCGC
GCGGGGTTGTGGGTGGTGGGGCTGGGAGTGGGATCCGATACAGTATTTGTTGGGGCATTGGTGG
CCGTGAGGTACTGGGGCGTGGCGAGGGTGAGCCAGGACCTTGCCCTGTTCTGCGCCCCTCATCC
CCTGCACCTCCGCGACTCTGGGGCGGCCAGGCAGCGTGAGGAAGTTGGGAAGCACGGAGCTGGG
GGCTTTGGTCATGAGCCCTCCTACGCTCTTGGCTGGTTCCTGGCATGGCCCGGCGCACTGAAGG
GACGGGGAGCCCCCAGCCGCTAACTTAAGCTCCAGACAGCCTGATCCCGAGGGGCAGAGGAGGG
GCTCTGGGCCGTGACCCTGACTTCTCCCCGGCCAGGGCCAGGCTCAGCGGGAGTAGCCCCAGCC
CCAAGTCTCTGTGTGTTGCTTTATTATTTTTTCCTCCTATGTGTGGGTTTTTTCTTGGAACTGT
TTCATAGGAACTCCTGTAATAAAGCCTTGGTGTTCTCTTGGTGCTCTGA

hide sequence

RefSeq Acc Id:

XM_005394046 ⟹ XP_005394103

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955451	5,097,058 - 5,124,318 (+)	NCBI

Sequence:

show sequence

TGGACCTCGCAGGCTGACAGAGAGGACGGAGAGCTGCCGTGCATATGGCTCTGGGATAGTGGTT
GGCACGGAAGGAGCAGGCAGTGGGACCGTCCCAGAGCCGGCGACAGGATGCCCCGGTGGTGCGG
ATGACCTGCATCCAGCCGAGCCCAGTCCAGGCCCGCATGTCGCCGCCCCATGAGTGCCGCTCCT
CGAGGGCCGCCTGGGGCTCCGCGCCCATAGTCTCCTGACCCGGAGCCCCACTGCCCATTGGCGT
ACAGAGGAGGAGGCGCAGGGGTGAGCTTCCCGTATCCGCGGAGCAAGCAAGCAAGCAAGCAAGC
AAGCGGCCGACGGCGCAAGGACCAGGAACGAGGGGGCTTCGCGGCCGATCGATCGGAAACATTT
TCCCCAAGCGGCTGCACAAAATGACCAGCCTGTTCCGAAGGAGCAGCGGGGGCGGCGGGGCGGG
GGCGCGCGGGGCCGGGGCGGGGACCGGGAGCAGCTCCGCGGCCCCGCAGGAGCTCAACAACAGC
CGGCCCGCGCGCCAGGTGCGCCGCCTGGAGTTCAACCAGGCCATGGACGACTTCAAGACCATGT
TCCCCAACATGGACTACGACATCATCGAGTGCGTGCTGCGCGCCAACAGCGGCGCAGTGGACGC
CACCATCGACCAGCTGCTGCAGATGAACCTGGAGGGGGGCGGCAGCAGCGCCTACGAGGACAGC
TCCGACTCGGAGGACAGCATCCCCCCAGAGATCTTGGAAAGGACTTTGGAACCTGATAGCTCCG
ATGAAGAGCCTCCACCTGTGTACTCCCCTCCGGCCTACCACATGCACGTGTTCGACAGGCCTTA
CCCTCTGGCCCCGCCCACTCCACCGCCCCGGATTGATGTGCTGGGCTCCGGGCCCTCTGCAAGC
CAGAGGCGCTATCGGAACTGGAACCCACCGCTGCTGGGCAACCTCCCTGATGACTTTCTCCGCA
TCCTGCCCCAGCAGCTGGACAGCATACAGGGTAACCCCCGGTGCACCAAGTCTGTGAGCGGAGA
GGGAGGCCTGCCTCCCACAGCCGGAGACCAGGACAGCCGCTGGAAGCAGTACCTGGAGGACGAG
AGGATCGCGCTCTTCCTGCAGAACGAGGAGTTCATGAAGGAGCTGCAGCGGAACCGAGACTTCC
TCCTCGCCTTGGAGAGAGATCGACTGAAATATGAGTCCCAGAAATCCAAATCCAGCAGTGTGGC
GGTGGGAAATGACTTTGGCTTTCCCTCTTCTGTCCCAGGAAACAGTGATGCCAACCCTGCTGTG
TCTGAAGATGCCTTATTCAGGGACAAGTTGAAACACATGGGAAAATCCACCCGGAGGAAGCTGT
TTGAGCTGGCGCGCGCCTTCTCCGAGAAGACCAAAATGAGGAAGTCCAGGAGGAAGCACTTGCC
CAAGCATCAGTCGCTGGGGGCTGCTGCATCAACAGCCAATCTCCTGGATGACGTGGAGGGCCAC
GCTTGTGATGAAGACCTCCGGGGAAGGCGGCAGGAGACACCCAAGATGGAGGAAGCCCTCAGGG
AAGGACAGTAAGAGGTGCCAGCAGCTCCACCTCTCTAGGGATGCTCTGACCCGGCAGGGGCAGC
TGGAGAGCAACGCGGCACCCTGCTGAAGGGCCCGGATGCAGCCAGACTGACGGTGCTTGATTCG
GAGGCCGGGTGGTCCTCCAGCCATGGTCCAGCCCAGCCACTGCCACCTTGCACGGGACCTAGAA
CTTTGGAGTCGCCATCCTATGATTGGAGGAGGGACCTGGGGCCCCTAGAGGGCAGCAGCCAGGC
TTTTCTACAGCCGTGGGTGGCAATGCAGGAGTCACGCCTTTCTTTCTTAAAAAAAAAAAAAAAA
AAAATCTGAGGAAGTTCAGAGGCCGGAGTTTGGGAAAGGGCAGGATCACCCTAAGCAGGCTCTC
GGCTGGAGGTGAGCTCCTGCCTTCTTCCCTCCGCATCTCTCCAGCCGGGCGTCAGACTGCCTCA
TCTCCTACCCTTGTGTCCGGCTCTCTAGGCACCTTGGGCCCCTTCTTCCCAAGGCCACCTGCAT
CTCAGCCTTTCCCGGGGGCTGCAGGGCCACTTGGAGCCGGGGGGGGGGCAGTGGCGCTCACCAG
CGTGCCCTGAGGGGCGACCCTCAGCACCCCGCTTCCTCCCAATGGGGTGGGAGGAGCTGGAAGA
CTCTGGCCAGGCAGGGTCTGTCCCCTAAGGGTGGGCCGCTGGGGGCCGAGAGTGCCGCCTTGGA
GAAGGGGCAGCACCGGGTGGGGGCAGCTGCCAATAGCCAGGAGGTGATGGGAGGAGGAAAATTG
TGACTCCACCTATTCTTAACCACAAGGCCACTGCTAAGCGGCGGAGGCGCAGCTCTCCCCGGAC
TGGAGCGCAGCGGGTGCAGCTTCCGCGCGGGGTTGTGGGTGGTGGGGCTGGGAGTGGGATCCGA
TACAGTATTTGTTGGGGCATTGGTGGCCGTGAGGTACTGGGGCGTGGCGAGGGTGAGCCAGGAC
CTTGCCCTGTTCTGCGCCCCTCATCCCCTGCACCTCCGCGACTCTGGGGCGGCCAGGCAGCGTG
AGGAAGTTGGGAAGCACGGAGCTGGGGGCTTTGGTCATGAGCCCTCCTACGCTCTTGGCTGGTT
CCTGGCATGGCCCGGCGCACTGAAGGGACGGGGAGCCCCCAGCCGCTAACTTAAGCTCCAGACA
GCCTGATCCCGAGGGGCAGAGGAGGGGCTCTGGGCCGTGACCCTGACTTCTCCCCGGCCAGGGC
CAGGCTCAGCGGGAGTAGCCCCAGCCCCAAGTCTCTGTGTGTTGCTTTATTATTTTTTCCTCCT
ATGTGTGGGTTTTTTCTTGGAACTGTTTCATAGGAACTCCTGTAATAAAGCCTTGGTGTTCTCT
TGGTGCTCTGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005394101	(Get FASTA)	NCBI Sequence Viewer
	XP_005394102	(Get FASTA)	NCBI Sequence Viewer
	XP_005394103	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000018327
	ENSCLAP00000018327.1

RefSeq Acc Id:	XP_005394102 ⟸ XM_005394045
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2VNM4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSLFRRSSGGGGAGARGAGAGTGSSSAAPQELNNSRPARQVRRLEFNQAMDDFKTMFPNMDYD IIECVLRANSGAVDATIDQLLQMNLEGGGSSAYEDSSDSEDSIPPEILERTLEPDSSDEEPPPV YSPPAYHMHVFDRPYPLAPPTPPPRIDVLGSGPSASQRRYRNWNPPLLGNLPDDFLRILPQQLD SIQGNPRCTKSVSGEGGLPPTAGDQDSRWKQYLEDERIALFLQNEEFMKELQRNRDFLLALERD RLKYESQKSKSSSVAVGNDFGFPSSVPAQGPSLSRCLPLPGNSDANPAVSEDALFRDKLKHMGK STRRKLFELARAFSEKTKMRKSRRKHLPKHQSLGAAASTANLLDDVEGHACDEDLRGRRQETPK MEEALREGQ hide sequence

RefSeq Acc Id:	XP_005394101 ⟸ XM_005394044
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2VNM4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSLFRRSSGGGGAGARGAGAGTGSSSAAPQELNNSRPARQVRRLEFNQAMDDFKTMFPNMDYD IIECVLRANSGAVDATIDQLLQMNLEGGGSSAYEDSSDSEDSIPPEILERTLEPDSSDEEPPPV YSPPAYHMHVFDRPYPLAPPTPPPRIDVLGSGPSASQRRYRNWNPPLLGNLPDDFLRILPQQLD SIQGNPRCTKSVSGEGGLPPTAGDQDSRWKQYLEDERIALFLQNEEFMKELQRNRDFLLALERD RLKYESQKSKSSSVAVGNDFGFPSSVPAQGPSLSRCLPLPGNSDANPAVSEDALFRDKLKHMGK STRRKLFELARAFSEKTKMRKSRRKHLPKHQSLGAAASTANLLDDVEGHACDEDLRGRRQETPK MEEALREGQ hide sequence

RefSeq Acc Id:	XP_005394103 ⟸ XM_005394046
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2VNM4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSLFRRSSGGGGAGARGAGAGTGSSSAAPQELNNSRPARQVRRLEFNQAMDDFKTMFPNMDYD IIECVLRANSGAVDATIDQLLQMNLEGGGSSAYEDSSDSEDSIPPEILERTLEPDSSDEEPPPV YSPPAYHMHVFDRPYPLAPPTPPPRIDVLGSGPSASQRRYRNWNPPLLGNLPDDFLRILPQQLD SIQGNPRCTKSVSGEGGLPPTAGDQDSRWKQYLEDERIALFLQNEEFMKELQRNRDFLLALERD RLKYESQKSKSSSVAVGNDFGFPSSVPGNSDANPAVSEDALFRDKLKHMGKSTRRKLFELARAF SEKTKMRKSRRKHLPKHQSLGAAASTANLLDDVEGHACDEDLRGRRQETPKMEEALREGQ hide sequence

Ensembl Acc Id:

ENSCLAP00000018327 ⟸ ENSCLAT00000018506

Protein Domains

CUE

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000012560	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000018506	ENTREZGENE
	ENSCLAT00000018506.1	UniProtKB/TrEMBL
Gene3D-CATH	DNA helicase RuvA subunit, C-terminal domain	UniProtKB/TrEMBL
InterPro	CUE	UniProtKB/TrEMBL
	CUE_CUED1	UniProtKB/TrEMBL
	CUEDC1	UniProtKB/TrEMBL
	UBA-like_sf	UniProtKB/TrEMBL
NCBI Gene	Cuedc1	ENTREZGENE
PANTHER	CUE DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
	PTHR13467	UniProtKB/TrEMBL
Pfam	CUE	UniProtKB/TrEMBL
PROSITE	CUE	UniProtKB/TrEMBL
SMART	CUE	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46934	UniProtKB/TrEMBL
UniProt	A0A8C2VNM4	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar