Hhatl (hedgehog acyltransferase like) - Rat Genome Database

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Gene: Hhatl (hedgehog acyltransferase like) Chinchilla lanigera
Analyze
Symbol: Hhatl
Name: hedgehog acyltransferase like
RGD ID: 8939103
Description: INVOLVED IN negative regulation of N-terminal protein palmitoylation (ortholog); ASSOCIATED WITH congenital muscular dystrophy-dystroglycanopathy type A8 (ortholog); FOUND IN endoplasmic reticulum (ortholog); perinuclear region of cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: hedgehog acyltransferase-like
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542028,110,860 - 28,117,454 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542028,110,462 - 28,117,454 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Hhatl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542028,110,860 - 28,117,454 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542028,110,462 - 28,117,454 (+)NCBIChiLan1.0ChiLan1.0
HHATL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38342,692,663 - 42,702,798 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl342,692,663 - 42,702,824 (-)EnsemblGRCh38hg38GRCh38
GRCh37342,734,155 - 42,744,290 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36342,709,159 - 42,718,017 (-)NCBINCBI36Build 36hg18NCBI36
Build 34342,709,158 - 42,718,017NCBI
Celera342,674,550 - 42,684,714 (-)NCBICelera
Cytogenetic Map3p22.1NCBI
HuRef342,779,797 - 42,789,959 (-)NCBIHuRef
CHM1_1342,685,330 - 42,695,489 (-)NCBICHM1_1
T2T-CHM13v2.0342,710,674 - 42,720,816 (-)NCBIT2T-CHM13v2.0
Hhatl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399121,613,082 - 121,626,604 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9121,613,082 - 121,621,573 (-)EnsemblGRCm39 Ensembl
GRCm389121,784,016 - 121,792,507 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9121,784,016 - 121,792,507 (-)EnsemblGRCm38mm10GRCm38
MGSCv379121,693,134 - 121,701,625 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369121,632,720 - 121,641,082 (-)NCBIMGSCv36mm8
Celera9122,257,393 - 122,265,884 (-)NCBICelera
Cytogenetic Map9F4NCBI
cM Map972.62NCBI
Hhatl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88130,324,510 - 130,331,580 (-)NCBIGRCr8
mRatBN7.28121,447,001 - 121,454,070 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8121,447,002 - 121,454,001 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8127,046,167 - 127,053,166 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08125,245,234 - 125,252,233 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08123,074,437 - 123,081,437 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08130,422,071 - 130,429,205 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8130,422,066 - 130,429,132 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08129,601,906 - 129,608,992 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48127,146,272 - 127,153,271 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18127,166,101 - 127,173,006 (+)NCBI
Celera8120,581,182 - 120,588,181 (-)NCBICelera
Cytogenetic Map8q32NCBI
HHATL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2242,657,282 - 42,667,522 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1342,662,044 - 42,672,248 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0342,600,209 - 42,610,540 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1343,664,271 - 43,674,486 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl343,664,271 - 43,674,486 (-)Ensemblpanpan1.1panPan2
HHATL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12311,820,645 - 11,839,250 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2311,820,749 - 11,873,713 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2311,795,132 - 11,813,619 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02312,110,306 - 12,128,803 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2312,107,392 - 12,163,232 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12311,912,226 - 11,920,944 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02312,054,386 - 12,072,880 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02312,058,522 - 12,077,009 (-)NCBIUU_Cfam_GSD_1.0
Hhatl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118200,055,934 - 200,065,391 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366952,408,167 - 2,418,594 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366952,408,829 - 2,417,726 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HHATL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1326,206,867 - 26,222,499 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11326,209,397 - 26,219,944 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21328,877,128 - 28,887,087 (-)NCBISscrofa10.2Sscrofa10.2susScr3
HHATL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1224,149,375 - 4,169,760 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl224,148,531 - 4,157,265 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041163,039,382 - 163,051,643 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hhatl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473077,001,336 - 77,007,965 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473077,000,272 - 77,006,728 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000022940   ⟹   ENSCLAP00000022731
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542028,110,860 - 28,117,454 (+)Ensembl
RefSeq Acc Id: XM_005383532   ⟹   XP_005383589
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542028,110,860 - 28,117,454 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013513520   ⟹   XP_013368974
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542028,110,848 - 28,117,015 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013513521   ⟹   XP_013368975
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542028,110,462 - 28,117,015 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005383589 (Get FASTA)   NCBI Sequence Viewer  
  XP_013368974 (Get FASTA)   NCBI Sequence Viewer  
  XP_013368975 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000022731
  ENSCLAP00000022731.1
RefSeq Acc Id: XP_005383589   ⟸   XM_005383532
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VYZ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013368975   ⟸   XM_013513521
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013368974   ⟸   XM_013513520
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSCLAP00000022731   ⟸   ENSCLAT00000022940


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000015584 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000022940 ENTREZGENE
  ENSCLAT00000022940.1 UniProtKB/TrEMBL
InterPro MB_O-acyltransferase UniProtKB/TrEMBL
  MBOAT_fam UniProtKB/TrEMBL
NCBI Gene Hhatl ENTREZGENE
PANTHER ACYLTRANSFERASE UniProtKB/TrEMBL
  PTHR13285:SF19 UniProtKB/TrEMBL
Pfam MBOAT UniProtKB/TrEMBL
UniProt A0A8C2VYZ3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-06-20 Hhatl  hedgehog acyltransferase like    hedgehog acyltransferase-like  Symbol and/or name change 5135510 APPROVED