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Gene: Cdipt (CDP-diacylglycerol--inositol 3-phosphatidyltransferase) Chinchilla lanigera

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Symbol:

Cdipt

Name:

CDP-diacylglycerol--inositol 3-phosphatidyltransferase

RGD ID:

8938708

Description:

ENCODES a protein that exhibits alcohol binding (ortholog); carbohydrate binding (ortholog); CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity (ortholog); INVOLVED IN CDP-diacylglycerol metabolic process (ortholog); phosphatidylinositol biosynthetic process (ortholog); PARTICIPATES IN glycerophospholipid metabolic pathway; phosphoinositide metabolic pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); chromosome 16p11.2 deletion syndrome, 593-kb (ortholog); FOUND IN membrane (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955493	7,087,491 - 7,092,809 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955493	7,087,491 - 7,091,306 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

autistic disorder (ISO)

chromosome 16p11.2 deletion syndrome, 593-kb (ISO)

chromosome 16p11.2 duplication syndrome (ISO)

coronin-1A deficiency (ISO)

dilated cardiomyopathy (ISO)

Episodic Kinesigenic Dyskinesia (ISO)

episodic kinesigenic dyskinesia 1 (ISO)

Glycogen Storage Disease XII (ISO)

Neurodevelopmental Disorders (ISO)

schizophrenia (ISO)

spondylocostal dysostosis 5 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

CDP-diacylglycerol metabolic process (ISO)

phosphatidylinositol biosynthetic process (ISO)

Cellular Component

membrane (ISO)

Molecular Function

alcohol binding (ISO)

carbohydrate binding (ISO)

CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity (ISO)

diacylglycerol binding (ISO)

manganese ion binding (ISO)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

glycerophospholipid metabolic pathway (ISO)

phosphoinositide metabolic pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Cdipt
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955493	7,087,491 - 7,092,809 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955493	7,087,491 - 7,091,306 (+)	NCBI	ChiLan1.0	ChiLan1.0

CDIPT
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	29,858,357 - 29,863,226 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	29,858,357 - 29,863,414 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	29,869,678 - 29,874,547 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	29,777,179 - 29,782,079 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	16	72,921,652 - 72,926,552 (+)	NCBI		Celera
Cytogenetic Map	16	p11.2	NCBI
HuRef	16	27,530,442 - 27,535,342 (-)	NCBI		HuRef
CHM1_1	16	31,085,467 - 31,090,367 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	30,140,992 - 30,145,861 (-)	NCBI		T2T-CHM13v2.0

Cdipt
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	126,575,630 - 126,579,671 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	126,575,086 - 126,579,673 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	126,976,458 - 126,980,499 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	126,975,914 - 126,980,501 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	134,119,863 - 134,124,015 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	126,767,497 - 126,771,649 (+)	NCBI		MGSCv36	mm8
Celera	7	126,824,597 - 126,828,750 (+)	NCBI		Celera
Cytogenetic Map	7	F3	NCBI
cM Map	7	69.26	NCBI

Cdipt
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	191,013,632 - 191,017,943 (+)	NCBI		GRCr8
mRatBN7.2	1	181,583,098 - 181,587,409 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	181,583,141 - 181,587,408 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	189,934,634 - 189,938,771 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	197,120,717 - 197,124,854 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	189,788,158 - 189,792,306 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	198,409,186 - 198,413,497 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	198,409,360 - 198,413,497 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	205,389,555 - 205,393,866 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	186,153,278 - 186,157,415 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	186,303,158 - 186,307,296 (+)	NCBI
Celera	1	179,238,045 - 179,242,171 (+)	NCBI		Celera
Cytogenetic Map	1	q37	NCBI

CDIPT
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	30,608,092 - 30,613,317 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	35,612,916 - 35,617,789 (+)	NCBI		NHGRI_mPanPan1
PanPan1.1	16	30,227,772 - 30,233,145 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	30,227,772 - 30,233,145 (-)	Ensembl	panpan1.1		panPan2

CDIPT
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	17,910,141 - 17,914,573 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	17,910,192 - 17,914,653 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	19,486,938 - 19,491,185 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	18,043,835 - 18,048,081 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	18,043,835 - 18,048,346 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	17,843,271 - 17,847,518 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	17,758,970 - 17,763,216 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	18,074,273 - 18,078,521 (-)	NCBI		UU_Cfam_GSD_1.0

Cdipt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	124,488,678 - 124,494,864 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936501	12,590,373 - 12,593,419 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936501	12,590,373 - 12,592,724 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CDIPT
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	18,084,549 - 18,091,798 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	18,087,497 - 18,095,015 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	18,498,453 - 18,502,770 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CDIPT
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	26,791,952 - 26,798,199 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666068	2,734,184 - 2,739,363 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cdipt
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624782	13,339,399 - 13,342,702 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624782	13,339,398 - 13,345,748 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005405232	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01061154	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01195209	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000013938 ⟹ ENSCLAP00000013783

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955493	7,087,491 - 7,092,809 (+)	Ensembl

Ensembl Acc Id:

ENSCLAT00000013939 ⟹ ENSCLAP00000013784

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955493	7,087,917 - 7,090,564 (+)	Ensembl

RefSeq Acc Id:

XM_005405232 ⟹ XP_005405289

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955493	7,087,491 - 7,091,306 (+)	NCBI

Sequence:

show sequence

CGAGCCGATGCTAAGAGGCCAAGGCAGGACGAGGAAAAGGAAGCAGGCAGATTTTAAAGGGGAC
GCAGACTTTTTATTTTTAAAGCGGCTTTCTCCAATTTCACAACGACAGGCTCTGAGTAGATTTC
CAGAAGCCAAGCACAGCTGGAGCAGCCAGCATCGCTGCTGCTGGAGGTGGGAGCGCCAAGGGCC
GGGAGGAGGCGTGAGATTGCCCATCGGAAGGGTGGGGTGGGGTGCACTTGCCCTCTGCACTCCA
GGCCCCGGCCGGCTGCGGAGCTGAACATCTGGGTCCGGGCAGGGACAGCGGGGTCCAGTGCGCA
GGTAGCGTGGCCCATGCGACTGGCCAGAGGGTGAGGCCACGCAGGTAGGGGTGAGACAGAACGG
GCCCCTCCCGAGCGGGCCCTGGGCAGCAAGGAGGCCGCCGCGATGCCAGGCGAAAACATCTTCC
TGTTCGTGCCTAACCTCATCGGTTATGCCCGGATTGTCTTCGCCCTCGTTTCTTTCTACTTCAT
GCCTTGCTGCCCGCTCACGGCCTCCTCCTTCTACCTGCTCAGCGGGCTTCTGGACGCTGTCGAC
GGACACGCGGCTCGAGCCCTTGATCAAGGAACACGGTTTGGGGCCATGCTGGACATGCTGACGG
ACCGCTGTTCCACCATGTGTCTGCTGGTCAACCTGGCCCTGCTGTACCCTCGGGCCACCCTTCT
CTTCCAGCTCAGCATGAGCCTGGATGTGGCCAGTCACTGGCTCCACCTGCACAGCTCCGTGGTG
CGAGGCAGTGAGAGTCACAAGATGATCGACCTGTCTGGGAATCCTGTGCTCCGGATCTACTACA
CATCCAGGCCCGCTCTCTTCACGCTGTGCGCTGGAAACGAGCTTTTCTACTGCCTCCTCTACCT
GTTCAGTTTCTCCGAGGGACCATTAGTGGGATCCGTTGGGCTTTTCCGAATGGGCCTCTGGATC
ACTGCCCCCATCGCCTTGCTCAAGTCTGTCATCAGCGTCATCCACCTGATCACTGCTGCCCGCA
ACATGGCTGCCCTGGATGCAGCAGACCGTGCCAAGAAGAAGTGATCCTGGAACCTCCAGCCCTC
ACCTGCCCGGTGTCTCACAGCGCCACACGGCCCCCTGCCGCTCCCAGGAGGCCCCAGTCTCACG
TCTTCCTGTGTTGTGTTCTCCACCCTGTGGATGGGGTCAGCCTGTCTCTGGTATTGTCACCATG
TCTGCCATCCTGTGGGCCCATCCCTGGGGTCCCCAAGGACCTGGGCTACAAATGAAGGATGCTG
AGAGCTCCCACCCTTACAGCCGGCTGGGTACCGGGGGCCTCTCTCTGAGGGCTGAGCACCGCCA
CACCTGCTGCTGGCCGGGCCCTAGGCTCCACCTGGCCTGCGAATTTAGGGACGCTTGAGTGCCA
GCGATAAAGTAGGAGTTGGCTTTCCAAAAGACCGAGGACCAGACCTCTGTTCCGGGCCAGATGA
AGCCTGGGGCACCGTGCCCGAAAGGAAAGAGGTTGTCGGTCTCCCCGATCGGCCTGGCCCAGCC
CTGGAAGCCTCCGTAATAAAGGCAGGAGCTTCACTCTTGTGGGTGTGCTTTCCTTGGAGTTCTG
GGCTCAGGGTCTGGGTTGAGGGGAACATGGAGAAAAAGGAAACTCTATGTGAATGCCCTCCCCC
CCAGTTTTCCTGCTGGCCCCTTCCTGTCACGTGGCACAGTGCCACCCTGCAGAGAGGCCTTCGT
GCCACCCGGCTCATGCTGCACTTCTCTGCCCACCTACTTCGTCTGCTTTTATTTGTATTCTGGG
TATTTTCTCCCCCGGCTAGAATATGAACTCTGGGAAGGCACAGACTTTTCTTCCTTTCTCTGTG
TAGAATGAAGATTAACCTTCACCTAGCATATTGTAGGCTGCTTAATAAATATTCTTGAAAAGAT
CA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005405289	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000013783
	ENSCLAP00000013783.1
	ENSCLAP00000013784.1

RefSeq Acc Id:

XP_005405289 ⟸ XM_005405232

- UniProtKB:

A0A8C2VJJ7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPGENIFLFVPNLIGYARIVFALVSFYFMPCCPLTASSFYLLSGLLDAVDGHAARALDQGTRFG
AMLDMLTDRCSTMCLLVNLALLYPRATLLFQLSMSLDVASHWLHLHSSVVRGSESHKMIDLSGN
PVLRIYYTSRPALFTLCAGNELFYCLLYLFSFSEGPLVGSVGLFRMGLWITAPIALLKSVISVI
HLITAARNMAALDAADRAKKK

hide sequence

Ensembl Acc Id:

ENSCLAP00000013783 ⟸ ENSCLAT00000013938

Ensembl Acc Id:

ENSCLAP00000013784 ⟸ ENSCLAT00000013939

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000009525	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000013938	ENTREZGENE
	ENSCLAT00000013938.1	UniProtKB/TrEMBL
	ENSCLAT00000013939.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.120.1760	UniProtKB/TrEMBL
InterPro	CDP-OH_P_trans	UniProtKB/TrEMBL
	CDP-OH_PTrfase_TM_dom	UniProtKB/TrEMBL
	CDP_ALCOHOL_P_TRANSF_CS	UniProtKB/TrEMBL
	CDP_diag_ino_3_P_euk	UniProtKB/TrEMBL
NCBI Gene	Cdipt	ENTREZGENE
PANTHER	CDP-DIACYLGLYCEROL--INOSITOL 3-PHOSPHATIDYLTRANSFERASE	UniProtKB/TrEMBL
	PHOSPHATIDYLINOSITOL SYNTHASE	UniProtKB/TrEMBL
Pfam	CDP-OH_P_transf	UniProtKB/TrEMBL
PIRSF	CDP_diag_ino_3_P	UniProtKB/TrEMBL
PROSITE	CDP_ALCOHOL_P_TRANSF	UniProtKB/TrEMBL
UniProt	A0A8C2VF94_CHILA	UniProtKB/TrEMBL
	A0A8C2VJJ7	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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