Cdipt (CDP-diacylglycerol--inositol 3-phosphatidyltransferase) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Cdipt (CDP-diacylglycerol--inositol 3-phosphatidyltransferase) Mus musculus
Analyze
Symbol: Cdipt
Name: CDP-diacylglycerol--inositol 3-phosphatidyltransferase (Ensembl:CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase))
RGD ID: 732224
MGI Page MGI
Description: Predicted to enable several functions, including CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity; diacylglycerol binding activity; and manganese ion binding activity. Predicted to be involved in CDP-diacylglycerol metabolic process and phosphatidylinositol biosynthetic process. Predicted to act upstream of or within phospholipid biosynthetic process. Predicted to be located in membrane. Predicted to be active in Golgi apparatus. Is expressed in musculature; nervous system; and urinary system. Orthologous to human CDIPT (CDP-diacylglycerol--inositol 3-phosphatidyltransferase).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 9530042F15Rik; CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase); D7Bwg0575e; phosphatidylinositol synthase; PI synthase; Pis; Pis1; ptdIns synthase
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397126,575,630 - 126,579,671 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7126,575,086 - 126,579,673 (+)EnsemblGRCm39 Ensembl
GRCm387126,976,458 - 126,980,499 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7126,975,914 - 126,980,501 (+)EnsemblGRCm38mm10GRCm38
MGSCv377134,119,863 - 134,124,015 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367126,767,497 - 126,771,649 (+)NCBIMGSCv36mm8
Celera7126,824,597 - 126,828,750 (+)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis. Brady KP, etal., Genome Res 1997 Nov;7(11):1085-93.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:14681479   PMID:15489334   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:16602821   PMID:18675571   PMID:21267068   PMID:21677750   PMID:21873635   PMID:24457600   PMID:27626380   PMID:28378742   PMID:29518331   PMID:30068389   PMID:30550785  
PMID:32325033   PMID:32554809  


Genomics

Comparative Map Data
Cdipt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397126,575,630 - 126,579,671 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7126,575,086 - 126,579,673 (+)EnsemblGRCm39 Ensembl
GRCm387126,976,458 - 126,980,499 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7126,975,914 - 126,980,501 (+)EnsemblGRCm38mm10GRCm38
MGSCv377134,119,863 - 134,124,015 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367126,767,497 - 126,771,649 (+)NCBIMGSCv36mm8
Celera7126,824,597 - 126,828,750 (+)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.26NCBI
CDIPT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381629,858,357 - 29,863,226 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1629,858,357 - 29,863,414 (-)EnsemblGRCh38hg38GRCh38
GRCh371629,869,678 - 29,874,547 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361629,777,179 - 29,782,079 (-)NCBINCBI36Build 36hg18NCBI36
Celera1672,921,652 - 72,926,552 (+)NCBICelera
Cytogenetic Map16p11.2NCBI
HuRef1627,530,442 - 27,535,342 (-)NCBIHuRef
CHM1_11631,085,467 - 31,090,367 (-)NCBICHM1_1
T2T-CHM13v2.01630,140,992 - 30,145,861 (-)NCBIT2T-CHM13v2.0
Cdipt
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81191,013,632 - 191,017,943 (+)NCBIGRCr8
mRatBN7.21181,583,098 - 181,587,409 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1181,583,141 - 181,587,408 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1189,934,634 - 189,938,771 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01197,120,717 - 197,124,854 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01189,788,158 - 189,792,306 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01198,409,186 - 198,413,497 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1198,409,360 - 198,413,497 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01205,389,555 - 205,393,866 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41186,153,278 - 186,157,415 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11186,303,158 - 186,307,296 (+)NCBI
Celera1179,238,045 - 179,242,171 (+)NCBICelera
Cytogenetic Map1q37NCBI
Cdipt
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554937,087,491 - 7,092,809 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554937,087,491 - 7,091,306 (+)NCBIChiLan1.0ChiLan1.0
CDIPT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21830,608,092 - 30,613,317 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11635,612,916 - 35,617,789 (+)NCBINHGRI_mPanPan1
PanPan1.11630,227,772 - 30,233,145 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1630,227,772 - 30,233,145 (-)Ensemblpanpan1.1panPan2
CDIPT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1617,910,141 - 17,914,573 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl617,910,192 - 17,914,653 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha619,486,938 - 19,491,185 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0618,043,835 - 18,048,081 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl618,043,835 - 18,048,346 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1617,843,271 - 17,847,518 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0617,758,970 - 17,763,216 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0618,074,273 - 18,078,521 (-)NCBIUU_Cfam_GSD_1.0
Cdipt
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344124,488,678 - 124,494,864 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650112,590,373 - 12,593,419 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650112,590,373 - 12,592,724 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDIPT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl318,084,549 - 18,091,798 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1318,087,497 - 18,095,015 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2318,498,453 - 18,502,770 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDIPT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1526,791,952 - 26,798,199 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660682,734,184 - 2,739,363 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdipt
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478213,339,399 - 13,342,702 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478213,339,398 - 13,345,748 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cdipt
114 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:369
Count of miRNA genes:262
Interacting mature miRNAs:297
Transcripts:ENSMUST00000032920
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793391848127392041Mouse
1301478Eae26_msusceptibility to experimental allergic encephalomyelitis 26 (mouse)Not determined798164922132165010Mouse
13524850Asrq7_macoustic startle response 7 (mouse)798394974132394974Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined799837716133837716Mouse
11039524Tbbr3_mTrypanosoma brucei brucei response 3 (mouse)7100750722134750843Mouse
1301447Fembm3_mfemoral bone morphometry 3 (mouse)Not determined7100993261134993342Mouse
1357460Vtbt4_mvertebral trabecular bone trait 4 (mouse)Not determined7101693381135693530Mouse
1301105Cfld4_mcystic fibrosis lung disease 4 (mouse)Not determined7101693381135693530Mouse
1300721Cfbw3_mcystic fibrosis body weight 3 (mouse)Not determined7101693381135693530Mouse
4142312Nilac4_mnicotine induced locomotor activity 4 (mouse)Not determined7102485219136485380Mouse
5491192Mobq1_mmultigenic obesity QTL 1 (mouse)Not determined7105250663139250811Mouse
13524852Asrq7a_macoustic startle response 7a (mouse)7105350008139350008Mouse
14700684Civq1_mcerebral infarct volume QTL 1 (mouse)7109707335143707335Mouse
14700687Civq5_mcerebral infarct volume QTL 5 (mouse)7109707335143707335Mouse
14700688Civq6_mcerebral infarct volume QTL 6 (mouse)7109707335143707335Mouse
11059562Lmr21b_mleishmaniasis resistance 21b (mouse)7110967235144967336Mouse
10402499Lmr21_mleishmaniasis resistance 21 (mouse)Not determined7110967235144967336Mouse
1302032Alcp12_malcohol preference locus 12 (mouse)Not determined7111166122144995196Mouse
1301898Alcp14_malcohol preference locus 14 (mouse)Not determined7111166122144995196Mouse
1300670Sluc19_msusceptibility to lung cancer 19 (mouse)Not determined7111166122144995196Mouse
4142444Femwf5_mfemur work to failure 5 (mouse)Not determined112552248144995196Mouse
1300747Skts2_mskin tumor susceptibility 2 (mouse)Not determined7112922733144995196Mouse
38501072Stsl7_mSalmonella typhimurium susceptibility locus 7 (mouse)7115699235128501724Mouse
1300677Bmd9_mbone mineral density 9 (mouse)Not determined7116634089144995196Mouse
15092059Wogrme1_mweek one growth rate, maternal effect 1 (mouse)7117199227134101729Mouse
11059561Lmr21a_mleishmaniasis resistance 21a (mouse)7117750722127967336Mouse
1357711Adbg1_madult body growth 1 (mouse)Not determined7118693381144398314Mouse
1301773Stheal7_msoft tissue heal 7 (mouse)Not determined7119132573144995196Mouse
1357613Bsbob2_mBSB obesity 2 (mouse)Not determined7122250663128819324Mouse
1301903Tlsm1_mthymic lymphoma susceptible 1 (mouse)Not determined7122250663135170901Mouse
38501066Tip2_mtuberculosis immunophenotype 2, spleen CFU (mouse)7124299223126899172Mouse
4141945Il4ppq_mIL-4 producing potential QTL (mouse)Not determined7124513662128819324Mouse

Markers in Region
RH125230  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387126,980,302 - 126,980,478UniSTSGRCm38
MGSCv377134,123,816 - 134,123,992UniSTSGRCm37
Celera7126,828,551 - 126,828,727UniSTS
Cytogenetic Map7F4UniSTS
cM Map761.0UniSTS
UniSTS:235780  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387126,980,266 - 126,980,468UniSTSGRCm38
MGSCv377134,123,780 - 134,123,982UniSTSGRCm37
Celera7126,828,515 - 126,828,717UniSTS
Cytogenetic Map7F4UniSTS
cM Map761.0UniSTS
D7Bwg0575e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387126,980,332 - 126,980,481UniSTSGRCm38
MGSCv377134,123,846 - 134,123,995UniSTSGRCm37
Celera7126,828,581 - 126,828,730UniSTS
Cytogenetic Map7F4UniSTS
cM Map761.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001347656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001379260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC122863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK079226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK132286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK181290 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK197412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC021473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC032182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000032920   ⟹   ENSMUSP00000032920
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,575,086 - 126,579,334 (+)Ensembl
GRCm38.p6 Ensembl7126,975,914 - 126,980,162 (+)Ensembl
RefSeq Acc Id: ENSMUST00000205830   ⟹   ENSMUSP00000145787
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,576,025 - 126,578,993 (+)Ensembl
GRCm38.p6 Ensembl7126,976,853 - 126,979,821 (+)Ensembl
RefSeq Acc Id: ENSMUST00000206170   ⟹   ENSMUSP00000145579
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,575,630 - 126,579,673 (+)Ensembl
GRCm38.p6 Ensembl7126,976,458 - 126,980,501 (+)Ensembl
RefSeq Acc Id: ENSMUST00000206346   ⟹   ENSMUSP00000146137
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,575,760 - 126,578,823 (+)Ensembl
GRCm38.p6 Ensembl7126,976,588 - 126,979,651 (+)Ensembl
RefSeq Acc Id: ENSMUST00000206450   ⟹   ENSMUSP00000146256
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,575,902 - 126,579,209 (+)Ensembl
GRCm38.p6 Ensembl7126,976,730 - 126,980,037 (+)Ensembl
RefSeq Acc Id: ENSMUST00000206780   ⟹   ENSMUSP00000145841
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,575,550 - 126,578,575 (+)Ensembl
GRCm38.p6 Ensembl7126,976,378 - 126,979,403 (+)Ensembl
RefSeq Acc Id: ENSMUST00000206794   ⟹   ENSMUSP00000145918
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,575,608 - 126,579,671 (+)Ensembl
GRCm38.p6 Ensembl7126,976,436 - 126,980,499 (+)Ensembl
RefSeq Acc Id: ENSMUST00000206964
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,577,405 - 126,578,647 (+)Ensembl
GRCm38.p6 Ensembl7126,978,233 - 126,979,475 (+)Ensembl
RefSeq Acc Id: NM_001347656   ⟹   NP_001334585
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,575,630 - 126,579,671 (+)NCBI
GRCm387126,976,458 - 126,980,499 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001379260   ⟹   NP_001366189
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,575,630 - 126,579,671 (+)NCBI
GRCm387126,976,458 - 126,980,499 (+)NCBI
Sequence:
RefSeq Acc Id: NM_026638   ⟹   NP_080914
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,575,630 - 126,579,671 (+)NCBI
GRCm387126,976,458 - 126,980,499 (+)NCBI
MGSCv377134,119,863 - 134,124,015 (+)RGD
Celera7126,824,162 - 126,828,750 (+)NCBI
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_080914   ⟸   NM_026638
- Peptide Label: isoform 1
- UniProtKB: Q8VDP6 (UniProtKB/Swiss-Prot),   A0A0U1RP13 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001334585   ⟸   NM_001347656
- Peptide Label: isoform 2
- UniProtKB: A0A0U1RPV3 (UniProtKB/TrEMBL),   A0A0U1RNI6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001366189   ⟸   NM_001379260
- Peptide Label: isoform 3
- UniProtKB: A0A0U1RP13 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000032920   ⟸   ENSMUST00000032920
RefSeq Acc Id: ENSMUSP00000145579   ⟸   ENSMUST00000206170
RefSeq Acc Id: ENSMUSP00000145841   ⟸   ENSMUST00000206780
RefSeq Acc Id: ENSMUSP00000145918   ⟸   ENSMUST00000206794
RefSeq Acc Id: ENSMUSP00000146137   ⟸   ENSMUST00000206346
RefSeq Acc Id: ENSMUSP00000146256   ⟸   ENSMUST00000206450
RefSeq Acc Id: ENSMUSP00000145787   ⟸   ENSMUST00000205830

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8VDP6-F1-model_v2 AlphaFold Q8VDP6 1-213 view protein structure

Promoters
RGD ID:8665617
Promoter ID:EPDNEW_M10840
Type:initiation region
Name:Cdipt_1
Description:Mus musculus CDP-diacylglycerol--inositol 3-phosphatidyltransferase, transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387126,976,458 - 126,976,518EPDNEW
RGD ID:6840878
Promoter ID:MM_KWN:52739
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:AK086010_D830044I16RIK,   NM_138754,   UC009JTT.1,   UC009JTU.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367134,119,466 - 134,120,672 (+)MPROMDB
RGD ID:6848103
Promoter ID:MM_ACW:46100
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   Brain
Transcripts:CDIPT.DSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367134,122,781 - 134,123,281 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:105491 AgrOrtholog
Ensembl Genes ENSMUSG00000030682 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000032920 ENTREZGENE
  ENSMUST00000032920.5 UniProtKB/Swiss-Prot
  ENSMUST00000205830.2 UniProtKB/TrEMBL
  ENSMUST00000206170.2 UniProtKB/TrEMBL
  ENSMUST00000206346 ENTREZGENE
  ENSMUST00000206346.2 UniProtKB/TrEMBL
  ENSMUST00000206450.2 UniProtKB/TrEMBL
  ENSMUST00000206780.2 UniProtKB/TrEMBL
  ENSMUST00000206794.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.1760 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CDP-OH_P_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CDP-OH_PTrfase_TM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CDP_ALCOHOL_P_TRANSF_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CDP_diag_ino_3_P_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:52858 UniProtKB/Swiss-Prot
MGD MGI:105491 ENTREZGENE
NCBI Gene 52858 ENTREZGENE
PANTHER CDP-DIACYLGLYCEROL--INOSITOL 3-PHOSPHATIDYLTRANSFERASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PHOSPHATIDYLINOSITOL SYNTHASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam CDP-OH_P_transf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cdipt PhenoGen
PIRSF CDP_diag_ino_3_P UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE CDP_ALCOHOL_P_TRANSF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0U1RNI6 ENTREZGENE, UniProtKB/TrEMBL
  A0A0U1RP13 ENTREZGENE, UniProtKB/TrEMBL
  A0A0U1RP60_MOUSE UniProtKB/TrEMBL
  A0A0U1RPV3 ENTREZGENE, UniProtKB/TrEMBL
  A0A0U1RQ57_MOUSE UniProtKB/TrEMBL
  CDIPT_MOUSE UniProtKB/Swiss-Prot
  Q05BY1_MOUSE UniProtKB/TrEMBL
  Q8VDP6 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-07-04 Cdipt  CDP-diacylglycerol--inositol 3-phosphatidyltransferase  Cdipt  CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)  Symbol and/or name change 5135510 APPROVED