LOC102003664 (apoptosis-associated speck-like protein containing a CARD) - Rat Genome Database

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Gene: LOC102003664 (apoptosis-associated speck-like protein containing a CARD) Chinchilla lanigera
Analyze
Symbol: LOC102003664 (Ensembl: PYCARD)
Name: apoptosis-associated speck-like protein containing a CARD (Ensembl:PYD and CARD domain containing)
RGD ID: 8928418
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Pycard; PYD and CARD domain containing
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554938,051,637 - 8,055,532 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554938,053,687 - 8,055,442 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000023175   ⟹   ENSCLAP00000022959
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554938,051,637 - 8,055,532 (-)Ensembl
RefSeq Acc Id: XM_005405309   ⟹   XP_005405366
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554938,053,687 - 8,055,442 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005405366 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000022959
  ENSCLAP00000022959.1
RefSeq Acc Id: XP_005405366   ⟸   XM_005405309
- UniProtKB: A0A8C2VZJ2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000022959   ⟸   ENSCLAT00000023175
Protein Domains
CARD   Pyrin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000015754 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000023175 ENTREZGENE
  ENSCLAT00000023175.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.533.10 UniProtKB/TrEMBL
InterPro CARD UniProtKB/TrEMBL
  CARD8/ASC/NALP1_CARD UniProtKB/TrEMBL
  DAPIN UniProtKB/TrEMBL
  DEATH-like_dom_sf UniProtKB/TrEMBL
  NLRP_Inflammasome UniProtKB/TrEMBL
NCBI Gene Pycard ENTREZGENE
PANTHER APOPTOSIS-ASSOCIATED SPECK-LIKE PROTEIN CONTAINING A CARD UniProtKB/TrEMBL
  NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam CARD UniProtKB/TrEMBL
  PYRIN UniProtKB/TrEMBL
PROSITE CARD UniProtKB/TrEMBL
  DAPIN UniProtKB/TrEMBL
SMART PYRIN UniProtKB/TrEMBL
Superfamily-SCOP SSF47986 UniProtKB/TrEMBL
UniProt A0A8C2VZJ2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 LOC102003664  apoptosis-associated speck-like protein containing a CARD  Pycard  PYD and CARD domain containing  Symbol and/or name change 5135510 APPROVED