Znf212 (zinc finger protein 212) - Rat Genome Database

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Gene: Znf212 (zinc finger protein 212) Chinchilla lanigera
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Symbol: Znf212
Name: zinc finger protein 212
RGD ID: 8912813
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); INVOLVED IN dendrite development (ortholog); general adaptation syndrome, behavioral process (ortholog); neuromuscular process controlling balance (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554914,488,385 - 4,500,169 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554914,488,012 - 4,498,851 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Znf212
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554914,488,385 - 4,500,169 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554914,488,012 - 4,498,851 (+)NCBIChiLan1.0ChiLan1.0
ZNF212
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387149,239,651 - 149,255,606 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7149,239,651 - 149,255,606 (+)EnsemblGRCh38hg38GRCh38
GRCh377148,936,742 - 148,952,697 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367148,567,707 - 148,583,630 (+)NCBINCBI36Build 36hg18NCBI36
Build 347148,374,421 - 148,390,334NCBI
Celera7143,605,935 - 143,621,892 (+)NCBICelera
Cytogenetic Map7q36.1NCBI
HuRef7143,013,676 - 143,029,627 (+)NCBIHuRef
CHM1_17148,945,125 - 148,961,093 (+)NCBICHM1_1
T2T-CHM13v2.07150,421,475 - 150,437,430 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27148,274,750 - 148,290,707 (+)NCBI
Zfp212
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39647,897,502 - 47,909,573 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl647,897,410 - 47,909,573 (+)EnsemblGRCm39 Ensembl
GRCm38647,920,568 - 47,932,639 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl647,920,476 - 47,932,639 (+)EnsemblGRCm38mm10GRCm38
MGSCv37647,870,567 - 47,882,638 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36647,850,281 - 47,862,220 (+)NCBIMGSCv36mm8
Celera648,450,052 - 48,462,120 (+)NCBICelera
Cytogenetic Map6B2.3NCBI
cM Map622.94NCBI
Zfp212
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8478,254,582 - 78,267,017 (+)NCBIGRCr8
mRatBN7.2476,923,638 - 76,936,076 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl476,923,668 - 76,936,066 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx482,135,807 - 82,148,229 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0477,910,144 - 77,922,566 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0476,351,609 - 76,364,031 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0477,591,880 - 77,604,307 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl477,592,016 - 77,603,226 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04142,261,529 - 142,273,942 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4476,049,699 - 76,062,045 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1476,325,236 - 76,337,100 (+)NCBI
Celera471,871,201 - 71,883,645 (+)NCBICelera
Cytogenetic Map4q24NCBI
ZNF212
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26185,822,077 - 185,838,997 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1737,832,341 - 37,850,819 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07140,966,080 - 140,983,442 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17153,443,128 - 153,459,887 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7153,400,957 - 153,459,887 (+)Ensemblpanpan1.1panPan2
ZNF212
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11614,274,287 - 14,289,809 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1614,274,089 - 14,314,094 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1614,883,178 - 14,898,691 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01615,988,752 - 16,004,526 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1615,988,782 - 16,030,280 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11614,369,098 - 14,384,802 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01614,950,248 - 14,965,775 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01615,000,229 - 15,015,749 (+)NCBIUU_Cfam_GSD_1.0
LOC101970925
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244051187,567,246 - 7,570,476 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365275,332,773 - 5,338,429 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365275,332,791 - 5,337,376 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF212
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1855,528,138 - 55,541,841 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11855,528,144 - 55,541,859 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21860,791,344 - 60,805,045 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF212
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121117,796,951 - 117,813,818 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607213,748,249 - 13,764,846 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf212
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248006,531,021 - 6,535,529 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248006,531,016 - 6,541,659 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000001281   ⟹   ENSCLAP00000001240
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554914,488,385 - 4,500,169 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000001282   ⟹   ENSCLAP00000001241
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554914,493,856 - 4,497,778 (+)Ensembl
RefSeq Acc Id: XM_005404742   ⟹   XP_005404799
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554914,488,012 - 4,498,851 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005404743   ⟹   XP_005404800
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554914,488,318 - 4,498,851 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005404799 (Get FASTA)   NCBI Sequence Viewer  
  XP_005404800 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000001240
  ENSCLAP00000001240.1
  ENSCLAP00000001241.1
RefSeq Acc Id: XP_005404799   ⟸   XM_005404742
- Peptide Label: isoform X1
- UniProtKB: A0A8C2UMX7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005404800   ⟸   XM_005404743
- Peptide Label: isoform X2
- UniProtKB: A0A8C2UKX0 (UniProtKB/TrEMBL),   A0A8C2UMX7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000001241   ⟸   ENSCLAT00000001282
RefSeq Acc Id: ENSCLAP00000001240   ⟸   ENSCLAT00000001281
Protein Domains
C2H2-type   KRAB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000945 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000001281 ENTREZGENE
  ENSCLAT00000001281.1 UniProtKB/TrEMBL
  ENSCLAT00000001282.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Znf212 ENTREZGENE
PANTHER KRAB AND ZINC FINGER DOMAIN-CONTAINING UniProtKB/TrEMBL
  KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/TrEMBL
  KRAB DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  VASCULAR ENDOTHELIAL ZINC FINGER 1 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-H2C2_2 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A8C2UKX0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2UMX7 ENTREZGENE, UniProtKB/TrEMBL