Znf689 (zinc finger protein 689) - Rat Genome Database

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Gene: Znf689 (zinc finger protein 689) Chinchilla lanigera
Analyze
Symbol: Znf689
Name: zinc finger protein 689
RGD ID: 8911083
Description: ENCODES a protein that exhibits histone binding (ortholog); INVOLVED IN regulation of transcription by RNA polymerase II (ortholog); skeletal muscle cell differentiation (ortholog); ASSOCIATED WITH branched-chain keto acid dehydrogenase kinase deficiency (ortholog); dilated cardiomyopathy (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049557592,457 - 11,900 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049557595,615 - 11,900 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
nucleus  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Znf689
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049557592,457 - 11,900 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049557595,615 - 11,900 (-)NCBIChiLan1.0ChiLan1.0
ZNF689
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381630,602,558 - 30,610,775 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1630,602,558 - 30,624,012 (-)EnsemblGRCh38hg38GRCh38
GRCh371630,613,879 - 30,622,096 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361630,522,187 - 30,529,183 (-)NCBINCBI36Build 36hg18NCBI36
Celera1629,676,732 - 29,683,727 (+)NCBICelera
Cytogenetic Map16p11.2NCBI
HuRef1628,177,463 - 28,185,679 (-)NCBIHuRef
CHM1_11631,931,058 - 31,939,273 (-)NCBICHM1_1
T2T-CHM13v2.01630,989,540 - 30,997,757 (-)NCBIT2T-CHM13v2.0
Zfp689
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397127,041,308 - 127,048,330 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7127,041,308 - 127,048,330 (-)EnsemblGRCm39 Ensembl
GRCm387127,442,136 - 127,449,158 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7127,442,136 - 127,449,158 (-)EnsemblGRCm38mm10GRCm38
MGSCv377134,585,650 - 134,592,672 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367127,233,286 - 127,240,269 (-)NCBIMGSCv36mm8
Celera7127,288,031 - 127,295,054 (-)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.53NCBI
Zfp689
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81191,496,370 - 191,507,277 (-)NCBIGRCr8
mRatBN7.21182,065,885 - 182,074,343 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1182,065,826 - 182,076,679 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1190,416,447 - 190,423,828 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01197,602,533 - 197,609,914 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01190,273,052 - 190,280,430 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01198,894,000 - 198,900,364 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1198,894,000 - 199,064,150 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01205,892,549 - 205,898,913 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41186,711,808 - 186,717,877 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11186,861,688 - 186,867,758 (-)NCBI
Celera1179,719,685 - 179,725,754 (-)NCBICelera
Cytogenetic Map1q37NCBI
ZNF689
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21833,809,784 - 33,820,185 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11638,611,229 - 38,621,633 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01624,356,711 - 24,365,116 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11630,973,859 - 30,981,882 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1630,973,859 - 30,981,882 (-)Ensemblpanpan1.1panPan2
ZNF689
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1617,552,119 - 17,557,077 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl617,540,075 - 17,591,092 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha619,125,900 - 19,133,232 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0617,683,006 - 17,690,337 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl617,671,556 - 17,722,463 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1617,483,183 - 17,490,514 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0617,398,250 - 17,405,582 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0617,713,485 - 17,720,817 (+)NCBIUU_Cfam_GSD_1.0
LOC101960186
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344124,918,494 - 124,929,518 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650113,016,340 - 13,023,690 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650113,017,941 - 13,023,640 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF689
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl317,766,764 - 17,772,871 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1317,766,740 - 17,772,875 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2318,226,377 - 18,228,897 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF689
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1527,291,363 - 27,299,404 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl527,290,555 - 27,298,904 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660682,203,167 - 2,211,691 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf689
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478213,752,341 - 13,758,637 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478213,752,341 - 13,758,871 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000000090   ⟹   ENSCLAP00000000063
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049557592,457 - 11,900 (-)Ensembl
RefSeq Acc Id: XM_005415094   ⟹   XP_005415151
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049557595,615 - 11,900 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005415151 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000000063
  ENSCLAP00000000063.1
RefSeq Acc Id: XP_005415151   ⟸   XM_005415094
- Sequence:
Ensembl Acc Id: ENSCLAP00000000063   ⟸   ENSCLAT00000000090
Protein Domains
C2H2-type   KRAB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000086 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000000090 ENTREZGENE
  ENSCLAT00000000090.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel_C2H2_ZnF UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Znf689 ENTREZGENE
PANTHER KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 688 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A8C2UI64_CHILA UniProtKB/TrEMBL