Adgb (androglobin) - Rat Genome Database

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Gene: Adgb (androglobin) Chinchilla lanigera
Analyze
Symbol: Adgb
Name: androglobin
RGD ID: 8879723
Description: INVOLVED IN spermatid development (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH fragile X syndrome (ortholog); genetic disease (ortholog); FOUND IN sperm annulus (ortholog); sperm flagellum (ortholog); sperm midpiece (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543914,144,466 - 14,269,371 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543914,144,056 - 14,268,983 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Adgb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543914,144,466 - 14,269,371 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543914,144,056 - 14,268,983 (-)NCBIChiLan1.0ChiLan1.0
ADGB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386146,598,972 - 146,815,462 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6146,598,967 - 146,815,462 (+)EnsemblGRCh38hg38GRCh38
GRCh376146,920,108 - 147,136,598 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366146,961,615 - 147,178,291 (+)NCBINCBI36Build 36hg18NCBI36
Celera6147,660,570 - 147,877,021 (+)NCBICelera
Cytogenetic Map6q24.3NCBI
HuRef6144,483,707 - 144,700,137 (+)NCBIHuRef
CHM1_16147,183,474 - 147,399,924 (+)NCBICHM1_1
T2T-CHM13v2.06147,792,194 - 148,008,697 (+)NCBIT2T-CHM13v2.0
Adgb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391010,211,447 - 10,350,837 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1010,211,453 - 10,348,070 (-)EnsemblGRCm39 Ensembl
GRCm381010,335,703 - 10,475,093 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1010,335,703 - 10,472,326 (-)EnsemblGRCm38mm10GRCm38
MGSCv371010,055,501 - 10,192,112 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361010,090,092 - 10,120,029 (-)NCBIMGSCv36mm8
Celera1010,227,141 - 10,367,560 (-)NCBICelera
Cytogenetic Map10A1NCBI
cM Map103.44NCBI
Adgb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr816,573,863 - 6,717,632 (-)NCBIGRCr8
mRatBN7.214,753,621 - 4,896,268 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl14,753,621 - 4,896,190 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.014,445,039 - 4,588,507 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14,445,027 - 4,560,789 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.016,109,628 - 6,234,213 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415,001,136 - 5,136,078 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera13,287,212 - 3,411,312 (-)NCBICelera
Cytogenetic Map1p13NCBI
ADGB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25166,605,318 - 166,827,107 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16164,497,836 - 164,719,499 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06144,398,888 - 144,620,220 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16149,112,994 - 149,333,954 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6149,112,994 - 149,333,954 (+)Ensemblpanpan1.1panPan2
ADGB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1137,752,844 - 37,914,588 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl137,752,823 - 37,914,356 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha138,645,140 - 38,806,515 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0137,922,593 - 38,084,182 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl137,922,513 - 38,084,144 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1137,800,332 - 37,962,286 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0137,671,683 - 37,833,358 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0138,001,663 - 38,164,313 (+)NCBIUU_Cfam_GSD_1.0
Adgb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946132,834,593 - 132,999,794 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936489102,850 - 251,289 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648986,626 - 251,289 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ADGB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl118,870,884 - 19,029,417 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1118,870,880 - 19,030,983 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2121,145,171 - 21,273,471 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ADGB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11324,980,438 - 25,220,684 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1324,980,698 - 25,174,877 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040200,924,169 - 201,183,067 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Adgb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478511,338,069 - 11,470,955 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478511,338,341 - 11,470,748 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000006694   ⟹   ENSCLAP00000006585
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543914,144,466 - 14,269,371 (-)Ensembl
RefSeq Acc Id: XM_005390627   ⟹   XP_005390684
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543914,144,056 - 14,268,983 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013517404   ⟹   XP_013372858
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543914,144,056 - 14,268,983 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013517405   ⟹   XP_013372859
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543914,146,616 - 14,268,983 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013517406   ⟹   XP_013372860
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543914,154,481 - 14,268,983 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013517407   ⟹   XP_013372861
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543914,144,056 - 14,238,677 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005390684   ⟸   XM_005390627
- Peptide Label: isoform X2
- UniProtKB: A0A8C2UWT5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013372858   ⟸   XM_013517404
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013372861   ⟸   XM_013517407
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_013372859   ⟸   XM_013517405
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013372860   ⟸   XM_013517406
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: ENSCLAP00000006585   ⟸   ENSCLAT00000006694
Protein Domains
Calpain catalytic


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000004642 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000006694 ENTREZGENE
  ENSCLAT00000006694.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.490.10 UniProtKB/TrEMBL
InterPro Globin/Proto UniProtKB/TrEMBL
  IQ_motif_EF-hand-BS UniProtKB/TrEMBL
  Papain-like_cys_pep_sf UniProtKB/TrEMBL
  Peptidase_C2_calpain_cat UniProtKB/TrEMBL
NCBI Gene Adgb ENTREZGENE
PANTHER ANDROGLOBIN UniProtKB/TrEMBL
  ANDROGLOBIN UniProtKB/TrEMBL
Pfam Peptidase_C2 UniProtKB/TrEMBL
PROSITE CALPAIN_CAT UniProtKB/TrEMBL
  PS50096 UniProtKB/TrEMBL
SMART CysPc UniProtKB/TrEMBL
Superfamily-SCOP SSF54001 UniProtKB/TrEMBL
UniProt A0A8C2UWT5 ENTREZGENE, UniProtKB/TrEMBL