Mrpl30 (mitochondrial ribosomal protein L30)

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Gene: Mrpl30 (mitochondrial ribosomal protein L30) Chinchilla lanigera

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Symbol:

Mrpl30

Name:

mitochondrial ribosomal protein L30

RGD ID:

8867214

Description:

FOUND IN mitochondrial large ribosomal subunit (ortholog); mitochondrion (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

39S ribosomal protein L30, mitochondrial

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955470	5,509,216 - 5,522,552 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955470	5,509,517 - 5,519,633 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

mitochondrial large ribosomal subunit (ISO)

mitochondrion (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Mrpl30
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955470	5,509,216 - 5,522,552 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955470	5,509,517 - 5,519,633 (+)	NCBI	ChiLan1.0	ChiLan1.0

MRPL30
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	99,181,184 - 99,199,561 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	99,181,152 - 99,199,561 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	99,797,647 - 99,816,024 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	99,164,010 - 99,180,521 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	99,256,095 - 99,272,414	NCBI
Celera	2	94,002,173 - 94,018,689 (+)	NCBI		Celera
Cytogenetic Map	2	q11.2	NCBI
HuRef	2	93,563,315 - 93,581,802 (+)	NCBI		HuRef
CHM1_1	2	99,802,440 - 99,820,922 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	99,640,062 - 99,658,443 (+)	NCBI		T2T-CHM13v2.0

Mrpl30
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	37,929,558 - 37,937,419 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	37,929,558 - 37,937,616 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	37,890,477 - 37,898,338 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	37,890,477 - 37,898,535 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	37,947,398 - 37,955,178 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	37,835,099 - 37,842,879 (+)	NCBI		MGSCv36	mm8
Celera	1	37,671,472 - 37,679,443 (+)	NCBI		Celera
Cytogenetic Map	1	B	NCBI
cM Map	1	16.17	NCBI

Mrpl30
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	47,621,226 - 47,631,986 (+)	NCBI		GRCr8
mRatBN7.2	9	40,125,352 - 40,136,189 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	40,125,430 - 40,137,257 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	48,621,247 - 48,632,004 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	53,744,002 - 53,754,759 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	52,026,129 - 52,036,888 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	44,483,809 - 44,496,116 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	44,483,875 - 44,571,331 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	44,181,199 - 44,193,496 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	36,839,342 - 36,850,101 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	9	36,840,769 - 36,851,515 (+)	NCBI
Celera	9	37,879,660 - 37,890,419 (+)	NCBI		Celera
Cytogenetic Map	9	q21	NCBI

MRPL30
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	29,206,579 - 29,248,923 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	29,216,713 - 29,251,683 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	100,099,758 - 100,116,240 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	100,111,515 - 100,129,797 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	100,111,515 - 100,127,864 (+)	Ensembl	panpan1.1		panPan2

MRPL30
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	43,494,658 - 43,513,241 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	43,418,142 - 43,436,770 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	44,366,676 - 44,385,400 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	44,364,571 - 44,385,355 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	44,076,874 - 44,095,427 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	44,360,325 - 44,378,962 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	44,544,720 - 44,563,427 (-)	NCBI		UU_Cfam_GSD_1.0

Mrpl30
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	84,957,894 - 84,958,741 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936661	1,610,765 - 1,619,598 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MRPL30
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	55,032,996 - 55,076,388 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	55,041,645 - 55,054,439 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	57,676,960 - 57,684,579 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MRPL30
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	2,902,811 - 2,921,394 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	2,902,894 - 2,917,668 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	170,506,485 - 170,524,523 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mrpl30
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624749	4,190,173 - 4,195,363 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624749	4,186,036 - 4,195,857 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005400742	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005400743	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013522819	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01052752	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDI01030683	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000008234 ⟹ ENSCLAP00000008109

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955470	5,509,216 - 5,522,552 (+)	Ensembl

RefSeq Acc Id:

XM_005400742 ⟹ XP_005400799

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955470	5,509,517 - 5,519,633 (+)	NCBI

Sequence:

show sequence

CGCGCGCCCTGCGACGGCAGGGTTTGAGTGTTGCACTTAATGGGGCCTTTCTCTTCTTAGCTTC
CGCTCTTTGCGGAAGTTCAGACTGGACATTTAGCGGGCGCTGGAGAAAATACTGAAATATGTGG
ATTAAGTAACCTGTCCAAGATAGACACGATTCATGAACCCCAATCATTCTGCTTTGACCTCTGA
AGACAGATAATTACTACGCTATGGCAGGGATTTTGCGCTCAGTGGTTCAGGGGCCCCCTGGAAG
GCTACAGAGTGTGACAAAAGGTGTGGAATCTCTCATGGGTACAGATTGGATTCGTCACAAATTT
ACCAAATCAAGAATTCCAGATAAAGTGTTTCAGCCTTCCCCTGAAGATCATGAAAAATATGGTG
GGGACCCACAGCACCCTCACAAATTGCACATTGTCACCAGAATAAGAAGTACAATAAGACGTCC
ATATTGGGAAAAAGATATAATAAAGATGCTTGGATTAGAAAAAGCCCATACCCCTCAAGTTCAT
AAGAATATCCCTTCAGTGAACGCGAAACTGAAAGTGGTTAAACATCTGATAAGAATCCAGCCCC
TGAAGCTGCCACAAGGACTTCCCACAGAAGAGAACATGGCTAACACGTGCCTCAAGAGCACCGG
GGAGTTAGTAGTACAGTGGCATCTAAAGCCCGTGGACACCTCTAATCCCAACACTCAGGGGGCT
GAGGCAGGAGGATCCTTGCAAGTTCAAGGCCGGCCCCAGGCTACATAGTTCAAGACTAGCCTAA
ATTACAAAGCAAGACCGTGACTCAAAGAAATCCCCTGTGGAGCAGGAAACAAGTTCTATGCCAC
AGAGCTTTATATTTAAAAAAATGCAAATTA

hide sequence

RefSeq Acc Id:

XM_005400743 ⟹ XP_005400800

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955470	5,509,535 - 5,519,633 (+)	NCBI

Sequence:

show sequence

AGGGTTTGAGTGTTGCACTTAATGGGGCCTTTCTCTTCTTAGCTTCCGCTCTTTGCGGAAGTTC
AGACTGGACATTTAGCGGGCGCTGCCTCTGAAGACAGATAATTACTACGCTATGGCAGGGATTT
TGCGCTCAGTGGTTCAGGGGCCCCCTGGAAGGCTACAGAGTGTGACAAAAGGTGTGGAATCTCT
CATGGGTACAGATTGGATTCGTCACAAATTTACCAAATCAAGAATTCCAGATAAAGTGTTTCAG
CCTTCCCCTGAAGATCATGAAAAATATGGTGGGGACCCACAGCACCCTCACAAATTGCACATTG
TCACCAGAATAAGAAGTACAATAAGACGTCCATATTGGGAAAAAGATATAATAAAGATGCTTGG
ATTAGAAAAAGCCCATACCCCTCAAGTTCATAAGAATATCCCTTCAGTGAACGCGAAACTGAAA
GTGGTTAAACATCTGATAAGAATCCAGCCCCTGAAGCTGCCACAAGGACTTCCCACAGAAGAGA
ACATGGCTAACACGTGCCTCAAGAGCACCGGGGAGTTAGTAGTACAGTGGCATCTAAAGCCCGT
GGACACCTCTAATCCCAACACTCAGGGGGCTGAGGCAGGAGGATCCTTGCAAGTTCAAGGCCGG
CCCCAGGCTACATAGTTCAAGACTAGCCTAAATTACAAAGCAAGACCGTGACTCAAAGAAATCC
CCTGTGGAGCAGGAAACAAGTTCTATGCCACAGAGCTTTATATTTAAAAAAATGCAAATTA

hide sequence

RefSeq Acc Id:

XM_013522819 ⟹ XP_013378273

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955470	5,512,654 - 5,519,633 (+)	NCBI

Sequence:

show sequence

GAATCGGACTCAGGACCCTGCACTTGCCAGGAGAAAATACTGAAATATGTGGATTAAGTAACCT
GTCCAAGATAGACACGATTCATGAACCCCAATCATTCTGCTTTGACCTCTGAAGACAGATAATT
ACTACGCTATGGCAGGGATTTTGCGCTCAGTGGTTCAGGGGCCCCCTGGAAGGCTACAGAGTGT
GACAAAAGGTGTGGAATCTCTCATGGGTACAGATTGGATTCGTCACAAATTTACCAAATCAAGA
ATTCCAGATAAAGTGTTTCAGCCTTCCCCTGAAGATCATGAAAAATATGGTGGGGACCCACAGC
ACCCTCACAAATTGCACATTGTCACCAGAATAAGAAGTACAATAAGACGTCCATATTGGGAAAA
AGATATAATAAAGATGCTTGGATTAGAAAAAGCCCATACCCCTCAAGTTCATAAGAATATCCCT
TCAGTGAACGCGAAACTGAAAGTGGTTAAACATCTGATAAGAATCCAGCCCCTGAAGCTGCCAC
AAGGACTTCCCACAGAAGAGAACATGGCTAACACGTGCCTCAAGAGCACCGGGGAGTTAGTAGT
ACAGTGGCATCTAAAGCCCGTGGACACCTCTAATCCCAACACTCAGGGGGCTGAGGCAGGAGGA
TCCTTGCAAGTTCAAGGCCGGCCCCAGGCTACATAGTTCAAGACTAGCCTAAATTACAAAGCAA
GACCGTGACTCAAAGAAATCCCCTGTGGAGCAGGAAACAAGTTCTATGCCACAGAGCTTTATAT
TTAAAAAAATGCAAATTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005400799	(Get FASTA)	NCBI Sequence Viewer
	XP_005400800	(Get FASTA)	NCBI Sequence Viewer
	XP_013378273	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000008109
	ENSCLAP00000008109.1

RefSeq Acc Id:	XP_005400799 ⟸ XM_005400742
- UniProtKB:	A0A8C2UZN1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGILRSVVQGPPGRLQSVTKGVESLMGTDWIRHKFTKSRIPDKVFQPSPEDHEKYGGDPQHPH KLHIVTRIRSTIRRPYWEKDIIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHLIRIQPLKLPQGL PTEENMANTCLKSTGELVVQWHLKPVDTSNPNTQGAEAGGSLQVQGRPQAT hide sequence

RefSeq Acc Id:	XP_005400800 ⟸ XM_005400743
- UniProtKB:	A0A8C2UZN1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGILRSVVQGPPGRLQSVTKGVESLMGTDWIRHKFTKSRIPDKVFQPSPEDHEKYGGDPQHPH KLHIVTRIRSTIRRPYWEKDIIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHLIRIQPLKLPQGL PTEENMANTCLKSTGELVVQWHLKPVDTSNPNTQGAEAGGSLQVQGRPQAT hide sequence

RefSeq Acc Id:	XP_013378273 ⟸ XM_013522819
- UniProtKB:	A0A8C2UZN1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGILRSVVQGPPGRLQSVTKGVESLMGTDWIRHKFTKSRIPDKVFQPSPEDHEKYGGDPQHPH KLHIVTRIRSTIRRPYWEKDIIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHLIRIQPLKLPQGL PTEENMANTCLKSTGELVVQWHLKPVDTSNPNTQGAEAGGSLQVQGRPQAT hide sequence

Ensembl Acc Id:

ENSCLAP00000008109 ⟸ ENSCLAT00000008234

Protein Domains

Large ribosomal subunit protein uL30-like

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000005684	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000008234	ENTREZGENE
	ENSCLAT00000008234.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.1390.20	UniProtKB/TrEMBL
InterPro	L30_ferredoxin-like_sf	UniProtKB/TrEMBL
	Ribosomal_L30_bac-type	UniProtKB/TrEMBL
	Ribosomal_L30_ferredoxin-like	UniProtKB/TrEMBL
NCBI Gene	Mrpl30	ENTREZGENE
PANTHER	39S RIBOSOMAL PROTEIN L30, MITOCHONDRIAL	UniProtKB/TrEMBL
	PTHR15892	UniProtKB/TrEMBL
Pfam	Ribosomal_L30	UniProtKB/TrEMBL
Superfamily-SCOP	SSF55129	UniProtKB/TrEMBL
UniProt	A0A8C2UZN1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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