MRPL30 (mitochondrial ribosomal protein L30) - Rat Genome Database

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Gene: MRPL30 (mitochondrial ribosomal protein L30) Canis lupus familiaris
Analyze
Symbol: MRPL30
Name: mitochondrial ribosomal protein L30
RGD ID: 12372527
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN translation (inferred); FOUND IN large ribosomal subunit (inferred); mitochondrial large ribosomal subunit (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 39S ribosomal protein L30, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11043,494,658 - 43,513,241 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1043,418,142 - 43,436,770 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01044,366,676 - 44,385,400 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1044,364,571 - 44,385,355 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11044,076,874 - 44,095,427 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01044,360,325 - 44,378,962 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01044,544,720 - 44,563,427 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
MRPL30
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11043,494,658 - 43,513,241 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1043,418,142 - 43,436,770 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01044,366,676 - 44,385,400 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1044,364,571 - 44,385,355 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11044,076,874 - 44,095,427 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01044,360,325 - 44,378,962 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01044,544,720 - 44,563,427 (-)NCBIUU_Cfam_GSD_1.0
MRPL30
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38299,181,184 - 99,199,561 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl299,181,152 - 99,199,561 (+)EnsemblGRCh38hg38GRCh38
GRCh37299,797,647 - 99,816,024 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36299,164,010 - 99,180,521 (+)NCBINCBI36Build 36hg18NCBI36
Build 34299,256,095 - 99,272,414NCBI
Celera294,002,173 - 94,018,689 (+)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef293,563,315 - 93,581,802 (+)NCBIHuRef
CHM1_1299,802,440 - 99,820,922 (+)NCBICHM1_1
T2T-CHM13v2.0299,640,062 - 99,658,443 (+)NCBIT2T-CHM13v2.0
Mrpl30
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39137,929,558 - 37,937,419 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl137,929,558 - 37,937,616 (+)EnsemblGRCm39 Ensembl
GRCm38137,890,477 - 37,898,338 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl137,890,477 - 37,898,535 (+)EnsemblGRCm38mm10GRCm38
MGSCv37137,947,398 - 37,955,178 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36137,835,099 - 37,842,879 (+)NCBIMGSCv36mm8
Celera137,671,472 - 37,679,443 (+)NCBICelera
Cytogenetic Map1BNCBI
cM Map116.17NCBI
Mrpl30
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8947,621,226 - 47,631,986 (+)NCBIGRCr8
mRatBN7.2940,125,352 - 40,136,189 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl940,125,430 - 40,137,257 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx948,621,247 - 48,632,004 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0953,744,002 - 53,754,759 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0952,026,129 - 52,036,888 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0944,483,809 - 44,496,116 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl944,483,875 - 44,571,331 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0944,181,199 - 44,193,496 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4936,839,342 - 36,850,101 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1936,840,769 - 36,851,515 (+)NCBI
Celera937,879,660 - 37,890,419 (+)NCBICelera
Cytogenetic Map9q21NCBI
Mrpl30
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554705,509,216 - 5,522,552 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554705,509,517 - 5,519,633 (+)NCBIChiLan1.0ChiLan1.0
MRPL30
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21229,206,579 - 29,248,923 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A29,216,713 - 29,251,683 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A100,099,758 - 100,116,240 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A100,111,515 - 100,129,797 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A100,111,515 - 100,127,864 (+)Ensemblpanpan1.1panPan2
Mrpl30
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629284,957,894 - 84,958,741 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049366611,610,765 - 1,619,598 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MRPL30
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl355,032,996 - 55,076,388 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1355,041,645 - 55,054,439 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2357,676,960 - 57,684,579 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MRPL30
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1142,902,811 - 2,921,394 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl142,902,894 - 2,917,668 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041170,506,485 - 170,524,523 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mrpl30
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247494,190,173 - 4,195,363 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247494,186,036 - 4,195,857 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MRPL30
421 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005626028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005626029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038489058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038551044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038551045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038551046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038551047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038614957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038614958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038614959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038614960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038680331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038680332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038680333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038680334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_531786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00845031736   ⟹   ENSCAFP00845024837
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1044,364,571 - 44,385,355 (-)Ensembl
RefSeq Acc Id: XM_005626028   ⟹   XP_005626085
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11043,494,658 - 43,513,214 (-)NCBI
Dog10K_Boxer_Tasha1043,418,142 - 43,436,747 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005626029   ⟹   XP_005626086
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11043,494,658 - 43,513,207 (-)NCBI
Dog10K_Boxer_Tasha1043,418,142 - 43,436,748 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038489058   ⟹   XP_038344986
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11044,076,874 - 44,095,427 (-)NCBI
RefSeq Acc Id: XM_038551044   ⟹   XP_038406972
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01044,544,720 - 44,563,427 (-)NCBI
RefSeq Acc Id: XM_038551045   ⟹   XP_038406973
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01044,544,720 - 44,563,404 (-)NCBI
RefSeq Acc Id: XM_038551046   ⟹   XP_038406974
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01044,544,720 - 44,563,405 (-)NCBI
RefSeq Acc Id: XM_038551047   ⟹   XP_038406975
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01044,544,720 - 44,558,066 (-)NCBI
RefSeq Acc Id: XM_038614957   ⟹   XP_038470885
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01044,360,325 - 44,378,962 (-)NCBI
RefSeq Acc Id: XM_038614958   ⟹   XP_038470886
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01044,360,325 - 44,378,939 (-)NCBI
RefSeq Acc Id: XM_038614959   ⟹   XP_038470887
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01044,360,325 - 44,378,939 (-)NCBI
RefSeq Acc Id: XM_038614960   ⟹   XP_038470888
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01044,360,325 - 44,373,602 (-)NCBI
RefSeq Acc Id: XM_038680331   ⟹   XP_038536259
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01044,366,676 - 44,385,400 (-)NCBI
RefSeq Acc Id: XM_038680332   ⟹   XP_038536260
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01044,366,676 - 44,385,377 (-)NCBI
RefSeq Acc Id: XM_038680333   ⟹   XP_038536261
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01044,366,676 - 44,385,378 (-)NCBI
RefSeq Acc Id: XM_038680334   ⟹   XP_038536262
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01044,366,676 - 44,380,039 (-)NCBI
RefSeq Acc Id: XM_531786   ⟹   XP_531786
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11043,494,658 - 43,513,241 (-)NCBI
Dog10K_Boxer_Tasha1043,418,142 - 43,436,770 (-)NCBI
Sequence:
RefSeq Acc Id: XP_531786   ⟸   XM_531786
- UniProtKB: A0A8C0LGU5 (UniProtKB/TrEMBL),   A0A8P0NRW8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005626086   ⟸   XM_005626029
- UniProtKB: A0A8C0LGU5 (UniProtKB/TrEMBL),   A0A8P0NRW8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005626085   ⟸   XM_005626028
- UniProtKB: A0A8C0LGU5 (UniProtKB/TrEMBL),   A0A8P0NRW8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038344986   ⟸   XM_038489058
RefSeq Acc Id: XP_038470885   ⟸   XM_038614957
RefSeq Acc Id: XP_038470887   ⟸   XM_038614959
RefSeq Acc Id: XP_038470886   ⟸   XM_038614958
RefSeq Acc Id: XP_038470888   ⟸   XM_038614960
RefSeq Acc Id: XP_038536259   ⟸   XM_038680331
- UniProtKB: A0A8I3PC63 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038536261   ⟸   XM_038680333
- UniProtKB: A0A8I3PC63 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038536260   ⟸   XM_038680332
- UniProtKB: A0A8I3PC63 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038536262   ⟸   XM_038680334
- UniProtKB: A0A8I3PC63 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038406972   ⟸   XM_038551044
- UniProtKB: A0A8I3PC63 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038406974   ⟸   XM_038551046
- UniProtKB: A0A8I3PC63 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038406973   ⟸   XM_038551045
- UniProtKB: A0A8I3PC63 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038406975   ⟸   XM_038551047
- UniProtKB: A0A8I3PC63 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845024837   ⟸   ENSCAFT00845031736
Protein Domains
Large ribosomal subunit protein uL30-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000031628 UniProtKB/TrEMBL
  ENSCAFG00845017929 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000047319.3 UniProtKB/TrEMBL
  ENSCAFT00845031736 ENTREZGENE
  ENSCAFT00845031736.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1390.20 UniProtKB/TrEMBL
InterPro L30_ferredoxin-like_sf UniProtKB/TrEMBL
  Ribosomal_L30_bac-type UniProtKB/TrEMBL
  Ribosomal_L30_ferredoxin-like UniProtKB/TrEMBL
KEGG Report cfa:474558 UniProtKB/TrEMBL
NCBI Gene MRPL30 ENTREZGENE
PANTHER 39S RIBOSOMAL PROTEIN L30, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR15892 UniProtKB/TrEMBL
Pfam Ribosomal_L30 UniProtKB/TrEMBL
Superfamily-SCOP SSF55129 UniProtKB/TrEMBL
UniProt A0A8C0LGU5 ENTREZGENE
  A0A8I3PC63 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NRW8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:110085 ENTREZGENE