Lyve1 (lymphatic vessel endothelial hyaluronan receptor 1) - Rat Genome Database

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Gene: Lyve1 (lymphatic vessel endothelial hyaluronan receptor 1) Chinchilla lanigera
Analyze
Symbol: Lyve1
Name: lymphatic vessel endothelial hyaluronan receptor 1
RGD ID: 8856819
Description: ENCODES a protein that exhibits cargo receptor activity (ortholog); hyaluronic acid binding (ortholog); transmembrane signaling receptor activity (ortholog); INVOLVED IN glycosaminoglycan catabolic process (ortholog); hyaluronan catabolic process (ortholog); positive regulation of cellular extravasation (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); FOUND IN cell periphery (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: lymphatic vessel endothelial hyaluronic acid receptor 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541426,160,605 - 26,175,891 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541426,161,768 - 26,175,621 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Lyve1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541426,160,605 - 26,175,891 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541426,161,768 - 26,175,621 (-)NCBIChiLan1.0ChiLan1.0
LYVE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381110,556,966 - 10,568,665 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1110,556,966 - 10,611,689 (-)EnsemblGRCh38hg38GRCh38
GRCh371110,578,513 - 10,590,212 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361110,535,989 - 10,546,941 (-)NCBINCBI36Build 36hg18NCBI36
Celera1110,700,953 - 10,711,906 (-)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef1110,251,901 - 10,262,854 (-)NCBIHuRef
CHM1_11110,577,487 - 10,589,311 (-)NCBICHM1_1
T2T-CHM13v2.01110,641,492 - 10,653,192 (-)NCBIT2T-CHM13v2.0
Lyve1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397110,449,814 - 110,462,160 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7110,449,814 - 110,462,446 (-)EnsemblGRCm39 Ensembl
GRCm387110,850,607 - 110,862,953 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7110,850,607 - 110,863,239 (-)EnsemblGRCm38mm10GRCm38
MGSCv377117,994,121 - 118,006,467 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367110,641,788 - 110,654,134 (-)NCBIMGSCv36mm8
Celera7110,824,675 - 110,837,013 (-)NCBICelera
Cytogenetic Map7E3NCBI
cM Map757.89NCBI
Lyve1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81174,393,387 - 174,410,977 (-)NCBIGRCr8
mRatBN7.21164,962,872 - 164,976,309 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1164,962,872 - 164,976,309 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1173,300,489 - 173,313,952 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01180,486,516 - 180,499,979 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01173,170,908 - 173,184,358 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01175,663,266 - 175,676,699 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1175,663,266 - 175,676,699 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01182,650,925 - 182,664,312 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41168,601,460 - 168,622,234 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11168,712,104 - 168,732,625 (-)NCBI
Celera1162,853,590 - 162,866,975 (-)NCBICelera
Cytogenetic Map1q33NCBI
LYVE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2912,994,134 - 13,011,465 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11112,956,484 - 12,973,381 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01110,690,086 - 10,702,785 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11110,417,223 - 10,428,170 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1110,417,223 - 10,428,170 (-)Ensemblpanpan1.1panPan2
LYVE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12133,716,138 - 33,727,470 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2133,716,581 - 33,727,297 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2133,281,339 - 33,292,627 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02134,593,113 - 34,604,407 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2134,593,119 - 34,611,630 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12133,854,083 - 33,864,902 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02134,024,281 - 34,035,563 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02134,316,909 - 34,328,196 (-)NCBIUU_Cfam_GSD_1.0
Lyve1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494751,754,473 - 51,768,804 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365287,788,352 - 7,802,902 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365287,788,560 - 7,802,821 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LYVE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl248,937,419 - 48,954,196 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1248,937,357 - 48,954,206 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2252,284,695 - 52,301,543 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LYVE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1154,252,203 - 54,268,873 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl154,253,495 - 54,269,598 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038151,906,808 - 151,923,634 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lyve1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247662,633,120 - 2,648,413 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247662,634,355 - 2,648,354 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000024711   ⟹   ENSCLAP00000024476
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541426,160,605 - 26,175,891 (-)Ensembl
RefSeq Acc Id: XM_005380283   ⟹   XP_005380340
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541426,161,768 - 26,175,621 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005380340 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000024476
  ENSCLAP00000024476.1
RefSeq Acc Id: XP_005380340   ⟸   XM_005380283
- UniProtKB: A0A8C2YUL2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000024476   ⟸   ENSCLAT00000024711
Protein Domains
Link


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000016806 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000024711 ENTREZGENE
  ENSCLAT00000024711.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.100.10 UniProtKB/TrEMBL
InterPro C-type_lectin-like/link_sf UniProtKB/TrEMBL
  CD44_antigen-like UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
  Link_dom UniProtKB/TrEMBL
NCBI Gene Lyve1 ENTREZGENE
PANTHER LYMPHATIC VESSEL ENDOTHELIAL HYALURONIC ACID RECEPTOR 1 UniProtKB/TrEMBL
  PTHR10225 UniProtKB/TrEMBL
Pfam Xlink UniProtKB/TrEMBL
PROSITE LINK_1 UniProtKB/TrEMBL
  LINK_2 UniProtKB/TrEMBL
SMART LINK UniProtKB/TrEMBL
Superfamily-SCOP SSF56436 UniProtKB/TrEMBL
UniProt A0A8C2YUL2 ENTREZGENE, UniProtKB/TrEMBL