Lcnl1 (lipocalin like 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Lcnl1 (lipocalin like 1) Chinchilla lanigera
Analyze
Symbol: Lcnl1
Name: lipocalin like 1
RGD ID: 8855819
Description: ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); autosomal dominant nocturnal frontal lobe epilepsy 5 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: lipocalin-like 1
RGD Orthologs
Human
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555135,012,879 - 5,015,482 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Lcnl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555135,012,879 - 5,015,482 (+)NCBIChiLan1.0ChiLan1.0
LCNL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389136,982,993 - 136,985,758 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9136,981,904 - 136,986,410 (+)EnsemblGRCh38hg38GRCh38
GRCh379139,877,445 - 139,880,210 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369138,997,266 - 139,000,031 (+)NCBINCBI36Build 36hg18NCBI36
Celera9110,389,580 - 110,392,345 (+)NCBICelera
Cytogenetic Map9q34.3NCBI
HuRef9109,336,551 - 109,339,316 (+)NCBIHuRef
CHM1_19140,026,203 - 140,028,968 (+)NCBICHM1_1
T2T-CHM13v2.09149,217,404 - 149,220,169 (+)NCBIT2T-CHM13v2.0
LCNL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2112,413,076 - 2,415,400 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan192,415,992 - 2,417,733 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09108,043,835 - 108,045,585 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19137,012,430 - 137,014,611 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9137,012,430 - 137,013,864 (+)Ensemblpanpan1.1panPan2
LCNL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1948,643,845 - 48,647,187 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha947,856,913 - 47,860,847 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0949,521,359 - 49,525,285 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl949,521,946 - 49,524,271 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1948,297,572 - 48,301,498 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0948,596,285 - 48,600,211 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0948,643,180 - 48,647,373 (-)NCBIUU_Cfam_GSD_1.0
Lcnl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947202,413,960 - 202,417,257 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936669957,801 - 960,114 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LCNL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1121,205,545 - 1,210,477 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660584,091,231 - 4,095,726 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lcnl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624760917,617 - 920,100 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_005415259   ⟹   XP_005415316
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555135,012,879 - 5,015,482 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005415316 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005415316   ⟸   XM_005415259
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Lcnl1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Lcnl1  lipocalin like 1    lipocalin-like 1  Symbol and/or name change 5135510 APPROVED