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Gene: Syne4 (spectrin repeat containing nuclear envelope family member 4) Chinchilla lanigera

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Symbol:

Syne4

Name:

spectrin repeat containing nuclear envelope family member 4

RGD ID:

8846457

Description:

INVOLVED IN establishment of epithelial cell apical/basal polarity (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness 76 (ortholog); Brugada syndrome 5 (ortholog); hereditary spastic paraplegia 75 (ortholog); FOUND IN nuclear outer membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

nesprin-4; spectrin repeat containing, nuclear envelope family member 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	2,580,743 - 2,584,967 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955468	2,580,743 - 2,584,967 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal recessive nonsyndromic deafness 76 (ISO)

Brugada syndrome 5 (ISO)

hereditary spastic paraplegia 75 (ISO)

nonsyndromic deafness (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

establishment of epithelial cell apical/basal polarity (ISO)

Cellular Component

nuclear outer membrane (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Syne4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	2,580,743 - 2,584,967 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955468	2,580,743 - 2,584,967 (+)	NCBI	ChiLan1.0	ChiLan1.0

SYNE4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	36,003,307 - 36,008,813 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	36,003,307 - 36,008,813 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	36,494,209 - 36,499,715 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	41,185,842 - 41,191,512 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	19	33,208,182 - 33,213,852 (-)	NCBI		Celera
Cytogenetic Map	19	q13.12	NCBI
HuRef	19	32,999,551 - 33,005,221 (-)	NCBI		HuRef
CHM1_1	19	36,495,363 - 36,501,021 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	38,549,106 - 38,554,612 (-)	NCBI		T2T-CHM13v2.0

Syne4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	30,014,268 - 30,018,471 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	30,014,232 - 30,018,471 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	30,314,816 - 30,319,045 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	30,314,807 - 30,319,046 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	31,099,835 - 31,104,064 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	30,023,589 - 30,027,802 (+)	NCBI		MGSCv36	mm8
Celera	7	24,910,949 - 24,915,178 (+)	NCBI		Celera
Cytogenetic Map	7	B1	NCBI
cM Map	7	17.39	NCBI

Syne4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	94,696,866 - 94,701,230 (+)	NCBI		GRCr8
mRatBN7.2	1	85,569,409 - 85,573,775 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	85,569,545 - 85,573,760 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	90,985,692 - 90,989,914 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	99,453,869 - 99,458,094 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	92,743,953 - 92,748,175 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	88,772,729 - 88,777,044 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	90,951,771 - 90,957,082 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	1	88,772,904 - 88,776,999 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	92,089,513 - 92,094,265 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	85,261,148 - 85,265,361 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	79,943,400 - 79,947,613 (+)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

SYNE4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	42,004,219 - 42,009,995 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	43,980,063 - 43,993,549 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	32,921,175 - 32,927,266 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	41,671,236 - 41,675,697 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	41,671,236 - 41,675,697 (-)	Ensembl	panpan1.1		panPan2

SYNE4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	116,676,365 - 116,686,911 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	116,670,841 - 116,680,515 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	116,082,051 - 116,086,286 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	117,279,504 - 117,283,709 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	117,279,808 - 117,283,665 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	116,843,545 - 116,847,745 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	116,467,111 - 116,471,289 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	117,522,317 - 117,526,499 (+)	NCBI		UU_Cfam_GSD_1.0

Syne4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	11,270,511 - 11,274,218 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936922	40,684 - 44,312 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936922	40,640 - 44,414 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SYNE4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	45,380,218 - 45,384,671 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	45,377,914 - 45,384,869 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	40,782,889 - 40,787,555 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SYNE4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	30,914,081 - 30,920,154 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	30,914,119 - 30,919,752 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666073	8,709,024 - 8,715,061 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005399934	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005399935	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005399936	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005399937	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005399938	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01051827	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01143421	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000024243 ⟹ ENSCLAP00000024013

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955468	2,580,743 - 2,584,967 (+)	Ensembl

Ensembl Acc Id:

ENSCLAT00000024244 ⟹ ENSCLAP00000024014

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955468	2,581,206 - 2,584,926 (+)	Ensembl

Ensembl Acc Id:

ENSCLAT00000024245 ⟹ ENSCLAP00000024015

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955468	2,581,206 - 2,582,982 (+)	Ensembl

RefSeq Acc Id:

XM_005399934 ⟹ XP_005399991

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955468	2,580,743 - 2,584,967 (+)	NCBI

Sequence:

show sequence

GCGTCAGCCTCCTGAGTGCTGGGATCACAGATGTGTGCCACTAAGCCCTGTTTACATGTTTTAA
TGTGAAGTGGGGGACAGATGCTTGGGCTCCTGAGCAAAGTGCTTGGGACCTTAATGGATAGGTG
GGCCCTGGAGGTTAGATTTATGAGTCAGGGAGAGGGGCAGAGCAGGGCTCTTGATGAGGTGGGT
GCGGCTTTCTATATGGAACCCTTGGGATGAGTTGGGTGAGGTTGGAAGGTTCAGCTACTGGCCT
GCCAGGAAGGAGTTAAGTGATTGCTATCCCTCAGCAGGGCCTCAGGTTACCTGGGTGCAGGTTC
CTCTAGGAAGGGGTGGAGCCAACTTTGCCTCTGGGACTCAGGCCTGGCCGAGGTCTGCTGAGGA
GGTCTGCGGAACACTGTCGACTAGGGAAGGGGCTTTATTGGGTGTCCTCTCCCAACCTTCTGTC
TCCAAGCCCCCAGCTATGTCCTTGTCCTCATCTCTGGCCCCTAGAGTCCCCTCAGAGCCCTTCA
GCCATCCTCCCGGAGCCCCTAGGGAGCCGGATGTTGCCGGATGCACCATCCGCCCTGCACCGGG
AGAGGAGACAATCAGGGGCCAGTCCATATCCTTTACCTCCAGGCCAGAGCAGGCCCAGGACTCC
TTAGACCCTTCTGAGTACCTCCATGGTGGACTGAGAGGCACTGAGCCTGCTGCCAGCGCCCCCC
GCACACCAGCACCCTCTTTTCATGAGCAGCCAGCTGGGAGCAAGCTCCACGAGCGCCCTGTCTC
TGGCCACGAAGTGTTGGAAGCTGAGCATGACAGCCTGCAGCTCTGCCTGCTGGGGCTGGGCCTC
CGACTGCAGGACCTGGAGCAGGGCCTCAGGCCCTGGACACTGGCTCAGAGCGGGATGGCCCAGT
TGCAGGCCCTGCAGGCAGAGCTACGAGGGGCAGCAGAACGTGTGGATGCACTGCTGGCATTTGG
TGAGGGGTTGGCACAGCGAAGTGAGCCCAGGGCCTGGACATCTCTGGAGCAGATCCTGAGGGCC
CTCAGAGGCCACCGAGATACCATCTTCCGACGGCTCTGGCAGCTGCAGGCCCAGCTGGTCAGCT
ATAACCTGGTGTTCGAGAAGGCCAACCCGTTGGACCAGGACTTGGTGGCTGAAGGGGATTCAGA
TGGGCCAGGACCTGGTGGAGTCTGGGGGTCCTGGGCACCCAGTAACCTCCCCACTCCTGCAGAG
CTGGAGTGGGACCCAGCAGCGGATGTTGGGGACCTTGGGCCCTTGGGGCAAAAGACAGCCTGGG
CTCCAGGGACTCCCTGTGAACTGTGTGGCCAGAGGGGCCCCCAGGGCAGGGGACAAGGCCTTGA
GGACATGCTTGTGCCGGGGCCCAGCCACTGGGAACACTTAGGATGTCACCGAAGACGCTCTCTG
CTCTGGAAGCCTCAGGACAAGAAGAGGCAAGCGTCTCCCAGTCTCCAGGACACGAAGCTGGAGG
TTGATAATGGGGACCCCACTCCTGCATCTAGGAGGCCCAGGACCTTTCTCCTTGTCCTCCTCTT
CCTTGTCCTGGTGGGTGCCACGTTGCTCTTGCCCATTTCTGGGGGCCCCTGCTGCTGTCATGCC
AGACTGGCCAGAACACCCTACCTGGTGCTCAGCTACGTCAATGGTCTCCCTCCAGTCTGAGTAC
CCAGCCCAGACATGAGTAATAAATGGTCACTGTCAAA

hide sequence

RefSeq Acc Id:

XM_005399935 ⟹ XP_005399992

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955468	2,580,743 - 2,584,967 (+)	NCBI

Sequence:

show sequence

GCGTCAGCCTCCTGAGTGCTGGGATCACAGATGTGTGCCACTAAGCCCTGTTTACATGTTTTAA
TGTGAAGTGGGGGACAGATGCTTGGGCTCCTGAGCAAAGTGCTTGGGACCTTAATGGATAGGTG
GGCCCTGGAGGTTAGATTTATGAGTCAGGGAGAGGGGCAGAGCAGGGCTCTTGATGAGGTGGGT
GCGGCTTTCTATATGGAACCCTTGGGATGAGTTGGGTGAGGTTGGAAGGTTCAGCTACTGGCCT
GCCAGGAAGGAGTTAAGTGATTGCTATCCCTCAGCAGGGCCTCAGGTTACCTGGGTGCAGGTTC
CTCTAGGAAGGGGTGGAGCCAACTTTGCCTCTGGGACTCAGGCCTGGCCGAGGTCTGCTGAGGA
GGTCTGCGGAACACTGTCGACTAGGGAAGGGGCTTTATTGGGTGTCCTCTCCCAACCTTCTGTC
TCCAAGCCCCCAGCTATGTCCTTGTCCTCATCTCTGGCCCCTAGAGTCCCCTCAGAGCCCTTCA
GCCATCCTCCCGGAGCCCCTAGGGAGCCGGATGTTGCCGGATGCACCATCCGCCCTGCACCGGG
AGAGGAGACAATCAGGGGCCAGTCCATATCCTTTACCTCCAGGCCAGAGCAGGCCCAGGACTCC
TTAGACCCTTCTGAGTACCTCCATGGTGGACTGAGAGGCACTGAGCCTGCTGCCAGCGCCCCCC
GCACACCAGCACCCTCTTTTCATGAGCAGCCAGCTGGGAGCAAGCTCCACGAGCGCCCTGTCTC
TGGCCACGAAGTGTTGGAAGCTGAGCATGACAGCCTGCAGCTCTGCCTGCTGGGGCTGGGCCTC
CGACTGCAGGACCTGGAGCAGGGCCTCAGGCCCTGGACACTGGCTCAGAGCGGGATGGCCCAGT
TGCAGGCCCTGCAGGCAGAGCTACGAGGGGCAGCAGAACGTGTGGATGCACTGCTGGCATTTGG
TGAGGGGTTGGCACAGCGAAGTGAGCCCAGGGCCTGGACATCTCTGGAGCAGATCCTGAGGGCC
CTCAGAGGCCACCGAGATACCATCTTCCGACGGCTCTGGCAGCTGCAGGCCCAGCTGGTGTTCG
AGAAGGCCAACCCGTTGGACCAGGACTTGGTGGCTGAAGGGGATTCAGATGGGCCAGGACCTGG
TGGAGTCTGGGGGTCCTGGGCACCCAGTAACCTCCCCACTCCTGCAGAGCTGGAGTGGGACCCA
GCAGCGGATGTTGGGGACCTTGGGCCCTTGGGGCAAAAGACAGCCTGGGCTCCAGGGACTCCCT
GTGAACTGTGTGGCCAGAGGGGCCCCCAGGGCAGGGGACAAGGCCTTGAGGACATGCTTGTGCC
GGGGCCCAGCCACTGGGAACACTTAGGATGTCACCGAAGACGCTCTCTGCTCTGGAAGCCTCAG
GACAAGAAGAGGCAAGCGTCTCCCAGTCTCCAGGACACGAAGCTGGAGGTTGATAATGGGGACC
CCACTCCTGCATCTAGGAGGCCCAGGACCTTTCTCCTTGTCCTCCTCTTCCTTGTCCTGGTGGG
TGCCACGTTGCTCTTGCCCATTTCTGGGGGCCCCTGCTGCTGTCATGCCAGACTGGCCAGAACA
CCCTACCTGGTGCTCAGCTACGTCAATGGTCTCCCTCCAGTCTGAGTACCCAGCCCAGACATGA
GTAATAAATGGTCACTGTCAAA

hide sequence

RefSeq Acc Id:

XM_005399936 ⟹ XP_005399993

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955468	2,580,743 - 2,584,967 (+)	NCBI

Sequence:

show sequence

GCGTCAGCCTCCTGAGTGCTGGGATCACAGATGTGTGCCACTAAGCCCTGTTTACATGTTTTAA
TGTGAAGTGGGGGACAGATGCTTGGGCTCCTGAGCAAAGTGCTTGGGACCTTAATGGATAGGTG
GGCCCTGGAGGTTAGATTTATGAGTCAGGGAGAGGGGCAGAGCAGGGCTCTTGATGAGGTGGGT
GCGGCTTTCTATATGGAACCCTTGGGATGAGTTGGGTGAGGTTGGAAGGTTCAGCTACTGGCCT
GCCAGGAAGGAGTTAAGTGATTGCTATCCCTCAGCAGGGCCTCAGGTTACCTGGGTGCAGGTTC
CTCTAGGAAGGGGTGGAGCCAACTTTGCCTCTGGGACTCAGGCCTGGCCGAGGTCTGCTGAGGA
GGTCTGCGGAACACTGTCGACTAGGGAAGGGGCTTTATTGGGTGTCCTCTCCCAACCTTCTGTC
TCCAAGCCCCCAGCTATGTCCTTGTCCTCATCTCTGGCCCCTAGAGTCCCCTCAGAGCCCTTCA
GCCATCCTCCCGGAGCCCCTAGGGAGCCGGATGTTGCCGGATGCACCATCCGCCCTGCACCGGG
AGAGGAGACAATCAGGCCAGAGCAGGCCCAGGACTCCTTAGACCCTTCTGAGTACCTCCATGGT
GGACTGAGAGGCACTGAGCCTGCTGCCAGCGCCCCCCGCACACCAGCACCCTCTTTTCATGAGC
AGCCAGCTGGGAGCAAGCTCCACGAGCGCCCTGTCTCTGGCCACGAAGTGTTGGAAGCTGAGCA
TGACAGCCTGCAGCTCTGCCTGCTGGGGCTGGGCCTCCGACTGCAGGACCTGGAGCAGGGCCTC
AGGCCCTGGACACTGGCTCAGAGCGGGATGGCCCAGTTGCAGGCCCTGCAGGCAGAGCTACGAG
GGGCAGCAGAACGTGTGGATGCACTGCTGGCATTTGGTGAGGGGTTGGCACAGCGAAGTGAGCC
CAGGGCCTGGACATCTCTGGAGCAGATCCTGAGGGCCCTCAGAGGCCACCGAGATACCATCTTC
CGACGGCTCTGGCAGCTGCAGGCCCAGCTGGTCAGCTATAACCTGGTGTTCGAGAAGGCCAACC
CGTTGGACCAGGACTTGGTGGCTGAAGGGGATTCAGATGGGCCAGGACCTGGTGGAGTCTGGGG
GTCCTGGGCACCCAGTAACCTCCCCACTCCTGCAGAGCTGGAGTGGGACCCAGCAGCGGATGTT
GGGGACCTTGGGCCCTTGGGGCAAAAGACAGCCTGGGCTCCAGGGACTCCCTGTGAACTGTGTG
GCCAGAGGGGCCCCCAGGGCAGGGGACAAGGCCTTGAGGACATGCTTGTGCCGGGGCCCAGCCA
CTGGGAACACTTAGGATGTCACCGAAGACGCTCTCTGCTCTGGAAGCCTCAGGACAAGAAGAGG
CAAGCGTCTCCCAGTCTCCAGGACACGAAGCTGGAGGTTGATAATGGGGACCCCACTCCTGCAT
CTAGGAGGCCCAGGACCTTTCTCCTTGTCCTCCTCTTCCTTGTCCTGGTGGGTGCCACGTTGCT
CTTGCCCATTTCTGGGGGCCCCTGCTGCTGTCATGCCAGACTGGCCAGAACACCCTACCTGGTG
CTCAGCTACGTCAATGGTCTCCCTCCAGTCTGAGTACCCAGCCCAGACATGAGTAATAAATGGT
CACTGTCAAA

hide sequence

RefSeq Acc Id:

XM_005399937 ⟹ XP_005399994

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955468	2,580,743 - 2,584,967 (+)	NCBI

Sequence:

show sequence

GCGTCAGCCTCCTGAGTGCTGGGATCACAGATGTGTGCCACTAAGCCCTGTTTACATGTTTTAA
TGTGAAGTGGGGGACAGATGCTTGGGCTCCTGAGCAAAGTGCTTGGGACCTTAATGGATAGGTG
GGCCCTGGAGGTTAGATTTATGAGTCAGGGAGAGGGGCAGAGCAGGGCTCTTGATGAGGTGGGT
GCGGCTTTCTATATGGAACCCTTGGGATGAGTTGGGTGAGGTTGGAAGGTTCAGCTACTGGCCT
GCCAGGAAGGAGTTAAGTGATTGCTATCCCTCAGCAGGGCCTCAGGTTACCTGGGTGCAGGTTC
CTCTAGGAAGGGGTGGAGCCAACTTTGCCTCTGGGACTCAGGCCTGGCCGAGGTCTGCTGAGGA
GGTCTGCGGAACACTGTCGACTAGGGAAGGGGCTTTATTGGGTGTCCTCTCCCAACCTTCTGTC
TCCAAGCCCCCAGCTATGTCCTTGTCCTCATCTCTGGCCCCTAGAGTCCCCTCAGAGCCCTTCA
GCCATCCTCCCGGAGCCCCTAGGGAGCCGGATGTTGCCGGATGCACCATCCGCCCTGCACCGGG
AGAGGAGACAATCAGGCCAGAGCAGGCCCAGGACTCCTTAGACCCTTCTGAGTACCTCCATGGT
GGACTGAGAGGCACTGAGCCTGCTGCCAGCGCCCCCCGCACACCAGCACCCTCTTTTCATGAGC
AGCCAGCTGGGAGCAAGCTCCACGAGCGCCCTGTCTCTGGCCACGAAGTGTTGGAAGCTGAGCA
TGACAGCCTGCAGCTCTGCCTGCTGGGGCTGGGCCTCCGACTGCAGGACCTGGAGCAGGGCCTC
AGGCCCTGGACACTGGCTCAGAGCGGGATGGCCCAGTTGCAGGCCCTGCAGGCAGAGCTACGAG
GGGCAGCAGAACGTGTGGATGCACTGCTGGCATTTGGTGAGGGGTTGGCACAGCGAAGTGAGCC
CAGGGCCTGGACATCTCTGGAGCAGATCCTGAGGGCCCTCAGAGGCCACCGAGATACCATCTTC
CGACGGCTCTGGCAGCTGCAGGCCCAGCTGGTCAGCTATAACCTGGTGTTCGAGAAGGCCAACC
CGTTGGACCAGGACTTGGTGGCTGAAGGGGATTCAGATGGGCCAGGACCTGGTGGAGTCTGGGG
GTCCTGGGCACCCAGTAACCTCCCCACTCCTGCAGAGCTGGAGTGGGACCCAGCAGCGGATGTT
GGGGACCTTGGGCCCTTGGGGCAAAAGACAGCCTGGGCTCCAGGGACTCCCTGTGAACTGTGTG
GCCAGAGGGGCCCCCAGGGCAGGGGACAAGGCCTTGAGGAACTGAATACTTCCCTCTCGCCACA
GGACATGCTTGTGCCGGGGCCCAGCCACTGGGAACACTTAGGATGTCACCGAAGACGCTCTCTG
CTCTGGAAGCCTCAGGACAAGAAGAGGCAAGCGTCTCCCAGTCTCCAGGACACGAAGCTGGAGG
TTGATAATGGGGACCCCACTCCTGCATCTAGGAGGCCCAGGACCTTTCTCCTTGTCCTCCTCTT
CCTTGTCCTGGTGGGTGCCACGTTGCTCTTGCCCATTTCTGGGGGCCCCTGCTGCTGTCATGCC
AGACTGGCCAGAACACCCTACCTGGTGCTCAGCTACGTCAATGGTCTCCCTCCAGTCTGAGTAC
CCAGCCCAGACATGAGTAATAAATGGTCACTGTCAAA

hide sequence

RefSeq Acc Id:

XM_005399938 ⟹ XP_005399995

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955468	2,580,743 - 2,584,967 (+)	NCBI

Sequence:

show sequence

GCGTCAGCCTCCTGAGTGCTGGGATCACAGATGTGTGCCACTAAGCCCTGTTTACATGTTTTAA
TGTGAAGTGGGGGACAGATGCTTGGGCTCCTGAGCAAAGTGCTTGGGACCTTAATGGATAGGTG
GGCCCTGGAGGTTAGATTTATGAGTCAGGGAGAGGGGCAGAGCAGGGCTCTTGATGAGGTGGGT
GCGGCTTTCTATATGGAACCCTTGGGATGAGTTGGGTGAGGTTGGAAGGTTCAGCTACTGGCCT
GCCAGGAAGGAGTTAAGTGATTGCTATCCCTCAGCAGGGCCTCAGGTTACCTGGGTGCAGGTTC
CTCTAGGAAGGGGTGGAGCCAACTTTGCCTCTGGGACTCAGGCCTGGCCGAGGTCTGCTGAGGA
GGTCTGCGGAACACTGTCGACTAGGGAAGGGGCTTTATTGGGTGTCCTCTCCCAACCTTCTGTC
TCCAAGCCCCCAGCTATGTCCTTGTCCTCATCTCTGGCCCCTAGAGTCCCCTCAGAGCCCTTCA
GCCATCCTCCCGGAGCCCCTAGGGAGCCGGATGTTGCCGGATGCACCATCCGCCCTGCACCGGG
AGAGGAGACAATCAGGGGCCAGTCCATATCCTTTACCTCCAGGCCAGAGCAGGCCCAGGACTCC
TTAGACCCTTCTGAGTACCTCCATGGTGGACTGAGAGGCACTGAGCCTGCTGCCAGCGCCCCCC
GCACACCAGCACCCTCTTTTCATGAGCAGCCAGCTGGGAGCAAGCTCCACGAGCGCCCTGTCTC
TGGCCACGAAGTGTTGGAAGCTGAGCATGACAGCCTGCAGCTCTGCCTGCTGGGGCTGGGCCTC
CGACTGCAGGACCTGGAGCAGGGCCTCAGGCCCTGGACACTGGCTCAGAGCGGGATGGCCCAGT
TGCAGGCCCTGCAGGCAGAGCTACGAGGGGCAGCAGAACGTGTGGATGCACTGCTGGCATTTGG
TGAGGGGTTGGCACAGCGAAGTGAGCCCAGGGCCTGGACATCTCTGGAGCAGATCCTGAGGGCC
CTCAGAGGCCACCGAGATACCATCTTCCGACGGCTCTGGCAGCTGCAGGCCCAGCTGGTCAGCT
ATAACCTGGACATGCTTGTGCCGGGGCCCAGCCACTGGGAACACTTAGGATGTCACCGAAGACG
CTCTCTGCTCTGGAAGCCTCAGGACAAGAAGAGGCAAGCGTCTCCCAGTCTCCAGGACACGAAG
CTGGAGGTTGATAATGGGGACCCCACTCCTGCATCTAGGAGGCCCAGGACCTTTCTCCTTGTCC
TCCTCTTCCTTGTCCTGGTGGGTGCCACGTTGCTCTTGCCCATTTCTGGGGGCCCCTGCTGCTG
TCATGCCAGACTGGCCAGAACACCCTACCTGGTGCTCAGCTACGTCAATGGTCTCCCTCCAGTC
TGAGTACCCAGCCCAGACATGAGTAATAAATGGTCACTGTCAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005399991	(Get FASTA)	NCBI Sequence Viewer
	XP_005399992	(Get FASTA)	NCBI Sequence Viewer
	XP_005399993	(Get FASTA)	NCBI Sequence Viewer
	XP_005399994	(Get FASTA)	NCBI Sequence Viewer
	XP_005399995	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000024013
	ENSCLAP00000024013.1
	ENSCLAP00000024014.1
	ENSCLAP00000024015.1

RefSeq Acc Id:

XP_005399991 ⟸ XM_005399934

- Peptide Label:

isoform X1

- Sequence:

show sequence

MRWVRLSIWNPWDELGEVGRFSYWPARKELSDCYPSAGPQVTWVQVPLGRGGANFASGTQAWPR
SAEEVCGTLSTREGALLGVLSQPSVSKPPAMSLSSSLAPRVPSEPFSHPPGAPREPDVAGCTIR
PAPGEETIRGQSISFTSRPEQAQDSLDPSEYLHGGLRGTEPAASAPRTPAPSFHEQPAGSKLHE
RPVSGHEVLEAEHDSLQLCLLGLGLRLQDLEQGLRPWTLAQSGMAQLQALQAELRGAAERVDAL
LAFGEGLAQRSEPRAWTSLEQILRALRGHRDTIFRRLWQLQAQLVSYNLVFEKANPLDQDLVAE
GDSDGPGPGGVWGSWAPSNLPTPAELEWDPAADVGDLGPLGQKTAWAPGTPCELCGQRGPQGRG
QGLEDMLVPGPSHWEHLGCHRRRSLLWKPQDKKRQASPSLQDTKLEVDNGDPTPASRRPRTFLL
VLLFLVLVGATLLLPISGGPCCCHARLARTPYLVLSYVNGLPPV

hide sequence

RefSeq Acc Id:

XP_005399995 ⟸ XM_005399938

- Peptide Label:

isoform X4

- Sequence:

show sequence

MRWVRLSIWNPWDELGEVGRFSYWPARKELSDCYPSAGPQVTWVQVPLGRGGANFASGTQAWPR
SAEEVCGTLSTREGALLGVLSQPSVSKPPAMSLSSSLAPRVPSEPFSHPPGAPREPDVAGCTIR
PAPGEETIRGQSISFTSRPEQAQDSLDPSEYLHGGLRGTEPAASAPRTPAPSFHEQPAGSKLHE
RPVSGHEVLEAEHDSLQLCLLGLGLRLQDLEQGLRPWTLAQSGMAQLQALQAELRGAAERVDAL
LAFGEGLAQRSEPRAWTSLEQILRALRGHRDTIFRRLWQLQAQLVSYNLDMLVPGPSHWEHLGC
HRRRSLLWKPQDKKRQASPSLQDTKLEVDNGDPTPASRRPRTFLLVLLFLVLVGATLLLPISGG
PCCCHARLARTPYLVLSYVNGLPPV

hide sequence

RefSeq Acc Id:

XP_005399992 ⟸ XM_005399935

- Peptide Label:

isoform X2

- Sequence:

show sequence

MRWVRLSIWNPWDELGEVGRFSYWPARKELSDCYPSAGPQVTWVQVPLGRGGANFASGTQAWPR
SAEEVCGTLSTREGALLGVLSQPSVSKPPAMSLSSSLAPRVPSEPFSHPPGAPREPDVAGCTIR
PAPGEETIRGQSISFTSRPEQAQDSLDPSEYLHGGLRGTEPAASAPRTPAPSFHEQPAGSKLHE
RPVSGHEVLEAEHDSLQLCLLGLGLRLQDLEQGLRPWTLAQSGMAQLQALQAELRGAAERVDAL
LAFGEGLAQRSEPRAWTSLEQILRALRGHRDTIFRRLWQLQAQLVFEKANPLDQDLVAEGDSDG
PGPGGVWGSWAPSNLPTPAELEWDPAADVGDLGPLGQKTAWAPGTPCELCGQRGPQGRGQGLED
MLVPGPSHWEHLGCHRRRSLLWKPQDKKRQASPSLQDTKLEVDNGDPTPASRRPRTFLLVLLFL
VLVGATLLLPISGGPCCCHARLARTPYLVLSYVNGLPPV

hide sequence

RefSeq Acc Id:

XP_005399994 ⟸ XM_005399937

- Peptide Label:

isoform X5

- Sequence:

show sequence

MRWVRLSIWNPWDELGEVGRFSYWPARKELSDCYPSAGPQVTWVQVPLGRGGANFASGTQAWPR
SAEEVCGTLSTREGALLGVLSQPSVSKPPAMSLSSSLAPRVPSEPFSHPPGAPREPDVAGCTIR
PAPGEETIRPEQAQDSLDPSEYLHGGLRGTEPAASAPRTPAPSFHEQPAGSKLHERPVSGHEVL
EAEHDSLQLCLLGLGLRLQDLEQGLRPWTLAQSGMAQLQALQAELRGAAERVDALLAFGEGLAQ
RSEPRAWTSLEQILRALRGHRDTIFRRLWQLQAQLVSYNLVFEKANPLDQDLVAEGDSDGPGPG
GVWGSWAPSNLPTPAELEWDPAADVGDLGPLGQKTAWAPGTPCELCGQRGPQGRGQGLEELNTS
LSPQDMLVPGPSHWEHLGCHRRRSLLWKPQDKKRQASPSLQDTKLEVDNGDPTPASRRPRTFLL
VLLFLVLVGATLLLPISGGPCCCHARLARTPYLVLSYVNGLPPV

hide sequence

RefSeq Acc Id:	XP_005399993 ⟸ XM_005399936
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C2W946 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRWVRLSIWNPWDELGEVGRFSYWPARKELSDCYPSAGPQVTWVQVPLGRGGANFASGTQAWPR SAEEVCGTLSTREGALLGVLSQPSVSKPPAMSLSSSLAPRVPSEPFSHPPGAPREPDVAGCTIR PAPGEETIRPEQAQDSLDPSEYLHGGLRGTEPAASAPRTPAPSFHEQPAGSKLHERPVSGHEVL EAEHDSLQLCLLGLGLRLQDLEQGLRPWTLAQSGMAQLQALQAELRGAAERVDALLAFGEGLAQ RSEPRAWTSLEQILRALRGHRDTIFRRLWQLQAQLVSYNLVFEKANPLDQDLVAEGDSDGPGPG GVWGSWAPSNLPTPAELEWDPAADVGDLGPLGQKTAWAPGTPCELCGQRGPQGRGQGLEDMLVP GPSHWEHLGCHRRRSLLWKPQDKKRQASPSLQDTKLEVDNGDPTPASRRPRTFLLVLLFLVLVG ATLLLPISGGPCCCHARLARTPYLVLSYVNGLPPV hide sequence

Ensembl Acc Id:

ENSCLAP00000024014 ⟸ ENSCLAT00000024244

Ensembl Acc Id:

ENSCLAP00000024015 ⟸ ENSCLAT00000024245

Ensembl Acc Id:

ENSCLAP00000024013 ⟸ ENSCLAT00000024243

Protein Domains

KASH

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000016485	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000024243	ENTREZGENE
	ENSCLAT00000024243.1	UniProtKB/TrEMBL
	ENSCLAT00000024244.1	UniProtKB/TrEMBL
	ENSCLAT00000024245.1	UniProtKB/TrEMBL
InterPro	KASH	UniProtKB/TrEMBL
	SYNE4	UniProtKB/TrEMBL
NCBI Gene	Syne4	ENTREZGENE
PANTHER	NESPRIN-4	UniProtKB/TrEMBL
	PTHR21640	UniProtKB/TrEMBL
Pfam	KASH	UniProtKB/TrEMBL
PROSITE	KASH	UniProtKB/TrEMBL
SMART	KASH	UniProtKB/TrEMBL
Superfamily-SCOP	Spectrin repeat	UniProtKB/TrEMBL
UniProt	A0A8C2W4U5_CHILA	UniProtKB/TrEMBL
	A0A8C2W6T7_CHILA	UniProtKB/TrEMBL
	A0A8C2W946	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-03	Syne4	spectrin repeat containing nuclear envelope family member 4		spectrin repeat containing, nuclear envelope family member 4	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM