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Gene: Susd6 (sushi domain containing 6) Chinchilla lanigera

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Symbol:

Susd6

Name:

sushi domain containing 6

RGD ID:

8822272

Description:

INVOLVED IN DNA damage response (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

Kiaa0247; sushi domain-containing protein 6

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955466	681,701 - 735,800 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955466	681,701 - 734,797 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA damage response (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data

Susd6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955466	681,701 - 735,800 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955466	681,701 - 734,797 (-)	NCBI	ChiLan1.0	ChiLan1.0

SUSD6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	69,611,596 - 69,715,144 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	69,611,596 - 69,715,144 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	14	70,078,313 - 70,181,861 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	69,148,066 - 69,251,614 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	14	69,148,065 - 69,251,612	NCBI
Celera	14	50,142,416 - 50,245,965 (+)	NCBI		Celera
Cytogenetic Map	14	q24.1	NCBI
HuRef	14	50,246,773 - 50,350,415 (+)	NCBI		HuRef
CHM1_1	14	70,016,445 - 70,119,974 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	14	63,819,270 - 63,922,809 (+)	NCBI		T2T-CHM13v2.0

Susd6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	80,837,306 - 80,927,607 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	80,837,284 - 80,927,609 (+)	Ensembl		GRCm39 Ensembl
GRCm38	12	80,790,532 - 80,880,833 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	80,790,510 - 80,880,835 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	12	81,891,546 - 81,981,820 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	12	81,709,407 - 81,799,681 (+)	NCBI		MGSCv36	mm8
Celera	12	82,255,910 - 82,346,200 (+)	NCBI		Celera
Cytogenetic Map	12	C3	NCBI
cM Map	12	37.05	NCBI

Susd6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	106,130,183 - 106,262,900 (+)	NCBI		GRCr8
mRatBN7.2	6	100,437,834 - 100,531,621 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	100,437,642 - 100,531,606 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	6	100,603,257 - 100,697,023 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	100,902,964 - 100,996,195 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	100,278,832 - 100,372,805 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	104,437,104 - 104,532,522 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	104,437,159 - 104,530,403 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	6	112,608,926 - 112,702,119 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	6	98,295,459 - 98,389,369 (+)	NCBI		Celera
Cytogenetic Map	6	q24	NCBI

SUSD6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	70,735,902 - 70,839,444 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	69,952,415 - 70,055,957 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	50,205,634 - 50,309,054 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	69,123,618 - 69,180,370 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	69,123,618 - 69,180,370 (+)	Ensembl	panpan1.1		panPan2

SUSD6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	43,378,680 - 43,463,208 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	43,412,243 - 43,464,979 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	43,056,743 - 43,154,704 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	43,597,408 - 43,695,155 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	43,596,986 - 43,695,147 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	43,211,778 - 43,309,503 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	43,285,746 - 43,382,971 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	43,645,411 - 43,743,214 (+)	NCBI		UU_Cfam_GSD_1.0

Susd6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	61,281,543 - 61,381,998 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936495	12,809,663 - 12,910,859 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936495	12,809,720 - 12,910,792 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SUSD6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	93,253,757 - 93,344,181 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	93,253,712 - 93,344,191 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	99,531,569 - 99,622,024 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SUSD6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	46,851,952 - 46,956,717 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	46,851,958 - 46,952,585 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666053	35,079,059 - 35,182,750 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Susd6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	31,380,603 - 31,476,817 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624734	31,380,817 - 31,476,844 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013521965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013521966	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013521967	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01050673	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCE01099041	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000007008 ⟹ ENSCLAP00000006896

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955466	681,701 - 735,800 (-)	Ensembl

RefSeq Acc Id:

XM_013521965 ⟹ XP_013377419

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955466	681,701 - 734,797 (-)	NCBI

Sequence:

show sequence

TGGCTGAGACTGTAAACAGAAGCCGGTGTCTTTCTAGTTTTCCTGAACATTTCCTTGTCTTTTG
TCCCCTCTGCGCCTCACGAGAACCTAGTGAGGGTGTCAGAGCGAGCAACAACTCACTTTACAAA
GGAGGAAGTAGGGGAGATGAGGTGCTGGCTTTAAGATTCTTACCTCTGGATTTTAAATTTTGTC
TTTTTAATAAAACTTGGACGGATAAAAGATGTGCCATGGCAGGATAGCACCAAAGAGCAACTCA
GCATTGGTTGTGGCCTCCGTGGGACATGGAATGTTCCTTCCTCTGGTGATCCTTAGCACGCTGC
TTGGAGACGGACTTGCTTCAGTGTGTCCCCTGCCCCCGGGGCCAGAAAATGGTGGCTACATCTG
CCACCCCAAGCCCTGCAGAGACCCCCTGGCCGCAGGCAGCGTCGTGGAGTACCTGTGTGCGGAA
GGCTACATGCTAAAGGGGGACTACAAGTACCTGACGTGTAAGGATGGCGAGTGGAAGCCGGCCA
TGGAGATCAGCTGCCGTCTCAACGAGGACAAAGAAACCCACACGTCACTTGGAGTCCCCACGCT
GTCCATAGTGGCTTCCACTGCCAGCTCCGTGGCACTCATTCTCCTCCTCGTGGTGCTGTTCGTG
CTGCTGCAGCCAAAGCTGAAGTCTTTCCATCACAGCAGGCGTGACCAAGGGGTGTCTGGGGACC
AGGTCTCCATCATGGTGGATGGGGTGCAGGTTGCACTGCCTTCATACGAGGAGGCTGTGTACGG
CAGTTCCGGTCACTGCATGCCGCCCGCAGACCCCAGAGTGCCCATCGTGCTGTCAGAAGGGGCT
GGGCCCAGTGGCAGGGGCCTGCCAAGGGAGCAGCAGGGCCAGGCGGCCTGCTCTTCTGCGGGTG
GGGAGGAAGAGGCCCCGGGCCAGTCGGGACTGTGTGAAGCCTGGGGCTCCCAGGGCTCAGAGAC
TGTGATGGTGCATCAAGCCACCACCTCTTCCTGGGTGGCTGGCTCAGGGGGCAGCCGGCCGGCA
CACAGAGAAGCCACAGATTCGGAGAACAGCGACATACAAAGCCTTTTGTCCCTCACATCAGAGG
AGTACACAGATGATATCCCGCTGTTGAAAGAAGCGTGAGGGCTGCGGCCAGCCTCTCTCCTCTC
TGAAGGTCTTCTCCACCCTTCCTCGCGCTCCCCGTGGGTTTGAGCACCCTGCACTCCAGCCACC
CCACCCGGATACCTGAGCTGCCACCTGTTTATCGGTGTGTCTCTGAGGGCCTGCAGGCCACCTC
ACTGGAAACTCAAGGAAGATTCTCGCCATCTGCTTGGACAGCTGGAGCAGCTGGCTCTTTGCCT
GGCCCAGTCTTCCCGTCTTTTGGGATGTATTTGAATGTGCTGGATCGAACCCTTCCTTTCCCTG
AGCCTCTGAGCCCCTTCCAGCCCGCACCGTGGTGGCAGCCCCGCAGCCCGCGTGGGGCTGGGCG
CCACCGTGCTCACTTGTGCCTTCCCCAGCCCCGCCTCGTCTCCCTGCCGCGCAGGCCTGCCGCT
GTCCACAGCCTTCGTGGCTGCTGCCCCTGCCCTCACAGGAGCTGAGCTAAGAGTGAGAGAGCCT
CTGAGGCACGAGAGGCTTTCACTGGGGCAGATGTGGGGCCCTGGGTTGACATGGTGGCACGTTT
CCTTGGCTGAGAATAGAGAATTTGGAAAATCATGCCAAAGCCATCCCAGCACCTGTCCAGCTCA
GGTGCAGGCTGCTGGCCCTGTGCAGAGTTTCCAAGAAGCATCCCGAAGATGCTGAGGGAGGGAA
AGAAGATGACTGGTGATGACTGTCTTCCTAATATGCAAGTTCTCACTCCGTACTTCCAGCGTTG
CACCTTGGCCTTGGTCTTTTCGTTCCCTGGATGCGGGGAGTTGCATGCCGCCTCCTGGGCTTCA
TCCCAGGCAGCTCTGGCTGCTTTGCTGCCCACAGGGCCTGAGGCACATCATCCCAGGAGTTCTG
AGATGCCATCCAACACTCACCTGGTCACTGGCAGTCTGGGCAAGGTGCCGCTTTCTGGGTTTGT
GGTGACGGAGGGGAGGCCGAGAGGCACAGTTCCCAGGCAGCTGCAGGCAGCTCCAGCCTGGCCC
TGAGGGTCCTCCTCACCGCGGTCATGTGCCTTAGTAACTGTGCCCAGGAAGTGGCCTGCTGCCT
GCTGCACCTCTGCTTTTCCTGCTTCTGCTCTTCCCGGTGCCCTGCACACGTCGTGGCTGACAAG
CCGTTCCTGTCTTCCCTGCCCTCTGGGGGAGGAGCTGAGAAAGGGTCCACAGCACCCCTTGCCT
TACTGACCGAGGTGGGCAAACGGGTGCCCCCAGCCTGGCTCCCGGGTCCCTCTAGATGGAAGCC
GGGGGTGTGGATGCTGGAGGGAAGCCACAGCAATGGGGCGCTCTGGGCGTCTCCCCCGCGCCCC
CTCGGCGCTGCGGTGAGTGTGGGAAGGCTGGGCAGACGAGCTCCACTGGGCTGCTACCTTCTGG
CGACAGACGTGGCATTAAGGAATGTTTGCTTTTGCTTTTTTTTTTCCCCCTGATACACTGGGGC
TGGGAAACCTCGCCGCTCACTCTGCTGCACCTCTGCTCCTCCCGAGCAGCTCTGGTGTGGTAAA
AATAATACAAAGCCCGGTTCAGGACCTGACCTAACAGGGTTAGCTCCAGGCACGGGTGGCCTGA
AGCTGGGGGAAGGGGCTTCTCCCCCCGCCCCCCGCCACCCCTCTGCCTCGTTCTCACAACGCAC
TTTACTCCCTGGTCATGCCTGGCCTCCTGCTGCCCCTCATCTTCTTTCCTCTCAGGGTAAGGGC
AGTGCCCGTTGTGCCTGCTGGCCGCTCCCACACGTCCCAGTCACCCCGCAGCCCCTCTGTTGTG
CTCAGAATCAGGCAGGCGAAGTCAGGTAGGGAACGGGTTGGAGAAGGTGCCAGAGTGGAAGGCT
GAGCCTGAGGGAGGAGAGACCTGTCTCAGCAGTTGCTGGCATGGACCCCGCAGAGGGGTCCGAA
GGCCTGGCTGCCTTCCCACGCGGACCCTCCTTGAGGCGCACCTGTACCCTTGCCCCCTCTAGGA
CAGGGCCCGTGAGAAGTGGGAAGGCGAGGCTGGAGTCTCAGAGCTGAGCCTTTGCTTTTATCTT
CCACCCTTCCGAAACCTGAATTCTGTTCTAGCACATTTGGTAAATAGAAGAGCCTGCCCTTTTC
TGGGTAGTTGCTCTGGGGTCTTGTCCACTCAGAGGTTGCACTTTTATTTCAGGTTTTCTCCGCT
GATGGCTCCTTCCTTCTCACCCCGAGTCCACGCTGCCGGGGTCCACAACCCAGGCCTGCCCACC
GGCTAGGAGAGTGGGAGGGGAGCACTGCGGGCTTGTGCTCCCGGCTCGGAGGGGGCCCCTGGGC
GGCTTAGAGCAGGCCCTGCAGCGGCCCCTGGCGAGCAGGCGCTTGCGGCTGCCTCTTCCGCAGC
TCTTTCCCTGAGACAGCCTCTTCCTCCTCAGCCACGTGCTGCTGTTGTGGGGCTTCTGAGCTTT
GTTCCTTGCAGAGGGACCGGGGACCCCTCAGCCGCTTCGGTGTGGGGCTTAGCTAGAGACAGGG
CGGGTGGCAGGCGGCAGGCTGCAAGCAGGCAGGCCACCCGGGGCCCAGAGCCCACAGCGCTGAG
CCCGGAGCCGGTGGCCCTGCTTGCCCGGGCCCACCTCCCATGGTGCCTGCAGTGCAAAGTCCCG
TCCACAAGGGGTCGGCACCAAAGGACTTTTAGAAAGGATTCTTTGCCGTTTTCTTTTTCTTTCT
TCCTTTTGCTTT

hide sequence

RefSeq Acc Id:

XM_013521966 ⟹ XP_013377420

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955466	681,701 - 729,822 (-)	NCBI

Sequence:

show sequence

GCTAGCTGCTGGCCTTGGCCTTTCCCCAGAAGGAGCTGAAAAACCATTGCTGTGCTTGGCTCCT
CCTGGCAGCAAGGATTTTGTTGGTGCTGGCTTTAAGATTCTTACCTCTGGATTTTAAATTTTGT
CTTTTTAATAAAACTTGGACGGATAAAAGATGTGCCATGGCAGGATAGCACCAAAGAGCAACTC
AGCATTGGTTGTGGCCTCCGTGGGACATGGAATGTTCCTTCCTCTGGTGATCCTTAGCACGCTG
CTTGGAGACGGACTTGCTTCAGTGTGTCCCCTGCCCCCGGGGCCAGAAAATGGTGGCTACATCT
GCCACCCCAAGCCCTGCAGAGACCCCCTGGCCGCAGGCAGCGTCGTGGAGTACCTGTGTGCGGA
AGGCTACATGCTAAAGGGGGACTACAAGTACCTGACGTGTAAGGATGGCGAGTGGAAGCCGGCC
ATGGAGATCAGCTGCCGTCTCAACGAGGACAAAGAAACCCACACGTCACTTGGAGTCCCCACGC
TGTCCATAGTGGCTTCCACTGCCAGCTCCGTGGCACTCATTCTCCTCCTCGTGGTGCTGTTCGT
GCTGCTGCAGCCAAAGCTGAAGTCTTTCCATCACAGCAGGCGTGACCAAGGGGTGTCTGGGGAC
CAGGTCTCCATCATGGTGGATGGGGTGCAGGTTGCACTGCCTTCATACGAGGAGGCTGTGTACG
GCAGTTCCGGTCACTGCATGCCGCCCGCAGACCCCAGAGTGCCCATCGTGCTGTCAGAAGGGGC
TGGGCCCAGTGGCAGGGGCCTGCCAAGGGAGCAGCAGGGCCAGGCGGCCTGCTCTTCTGCGGGT
GGGGAGGAAGAGGCCCCGGGCCAGTCGGGACTGTGTGAAGCCTGGGGCTCCCAGGGCTCAGAGA
CTGTGATGGTGCATCAAGCCACCACCTCTTCCTGGGTGGCTGGCTCAGGGGGCAGCCGGCCGGC
ACACAGAGAAGCCACAGATTCGGAGAACAGCGACATACAAAGCCTTTTGTCCCTCACATCAGAG
GAGTACACAGATGATATCCCGCTGTTGAAAGAAGCGTGAGGGCTGCGGCCAGCCTCTCTCCTCT
CTGAAGGTCTTCTCCACCCTTCCTCGCGCTCCCCGTGGGTTTGAGCACCCTGCACTCCAGCCAC
CCCACCCGGATACCTGAGCTGCCACCTGTTTATCGGTGTGTCTCTGAGGGCCTGCAGGCCACCT
CACTGGAAACTCAAGGAAGATTCTCGCCATCTGCTTGGACAGCTGGAGCAGCTGGCTCTTTGCC
TGGCCCAGTCTTCCCGTCTTTTGGGATGTATTTGAATGTGCTGGATCGAACCCTTCCTTTCCCT
GAGCCTCTGAGCCCCTTCCAGCCCGCACCGTGGTGGCAGCCCCGCAGCCCGCGTGGGGCTGGGC
GCCACCGTGCTCACTTGTGCCTTCCCCAGCCCCGCCTCGTCTCCCTGCCGCGCAGGCCTGCCGC
TGTCCACAGCCTTCGTGGCTGCTGCCCCTGCCCTCACAGGAGCTGAGCTAAGAGTGAGAGAGCC
TCTGAGGCACGAGAGGCTTTCACTGGGGCAGATGTGGGGCCCTGGGTTGACATGGTGGCACGTT
TCCTTGGCTGAGAATAGAGAATTTGGAAAATCATGCCAAAGCCATCCCAGCACCTGTCCAGCTC
AGGTGCAGGCTGCTGGCCCTGTGCAGAGTTTCCAAGAAGCATCCCGAAGATGCTGAGGGAGGGA
AAGAAGATGACTGGTGATGACTGTCTTCCTAATATGCAAGTTCTCACTCCGTACTTCCAGCGTT
GCACCTTGGCCTTGGTCTTTTCGTTCCCTGGATGCGGGGAGTTGCATGCCGCCTCCTGGGCTTC
ATCCCAGGCAGCTCTGGCTGCTTTGCTGCCCACAGGGCCTGAGGCACATCATCCCAGGAGTTCT
GAGATGCCATCCAACACTCACCTGGTCACTGGCAGTCTGGGCAAGGTGCCGCTTTCTGGGTTTG
TGGTGACGGAGGGGAGGCCGAGAGGCACAGTTCCCAGGCAGCTGCAGGCAGCTCCAGCCTGGCC
CTGAGGGTCCTCCTCACCGCGGTCATGTGCCTTAGTAACTGTGCCCAGGAAGTGGCCTGCTGCC
TGCTGCACCTCTGCTTTTCCTGCTTCTGCTCTTCCCGGTGCCCTGCACACGTCGTGGCTGACAA
GCCGTTCCTGTCTTCCCTGCCCTCTGGGGGAGGAGCTGAGAAAGGGTCCACAGCACCCCTTGCC
TTACTGACCGAGGTGGGCAAACGGGTGCCCCCAGCCTGGCTCCCGGGTCCCTCTAGATGGAAGC
CGGGGGTGTGGATGCTGGAGGGAAGCCACAGCAATGGGGCGCTCTGGGCGTCTCCCCCGCGCCC
CCTCGGCGCTGCGGTGAGTGTGGGAAGGCTGGGCAGACGAGCTCCACTGGGCTGCTACCTTCTG
GCGACAGACGTGGCATTAAGGAATGTTTGCTTTTGCTTTTTTTTTTCCCCCTGATACACTGGGG
CTGGGAAACCTCGCCGCTCACTCTGCTGCACCTCTGCTCCTCCCGAGCAGCTCTGGTGTGGTAA
AAATAATACAAAGCCCGGTTCAGGACCTGACCTAACAGGGTTAGCTCCAGGCACGGGTGGCCTG
AAGCTGGGGGAAGGGGCTTCTCCCCCCGCCCCCCGCCACCCCTCTGCCTCGTTCTCACAACGCA
CTTTACTCCCTGGTCATGCCTGGCCTCCTGCTGCCCCTCATCTTCTTTCCTCTCAGGGTAAGGG
CAGTGCCCGTTGTGCCTGCTGGCCGCTCCCACACGTCCCAGTCACCCCGCAGCCCCTCTGTTGT
GCTCAGAATCAGGCAGGCGAAGTCAGGTAGGGAACGGGTTGGAGAAGGTGCCAGAGTGGAAGGC
TGAGCCTGAGGGAGGAGAGACCTGTCTCAGCAGTTGCTGGCATGGACCCCGCAGAGGGGTCCGA
AGGCCTGGCTGCCTTCCCACGCGGACCCTCCTTGAGGCGCACCTGTACCCTTGCCCCCTCTAGG
ACAGGGCCCGTGAGAAGTGGGAAGGCGAGGCTGGAGTCTCAGAGCTGAGCCTTTGCTTTTATCT
TCCACCCTTCCGAAACCTGAATTCTGTTCTAGCACATTTGGTAAATAGAAGAGCCTGCCCTTTT
CTGGGTAGTTGCTCTGGGGTCTTGTCCACTCAGAGGTTGCACTTTTATTTCAGGTTTTCTCCGC
TGATGGCTCCTTCCTTCTCACCCCGAGTCCACGCTGCCGGGGTCCACAACCCAGGCCTGCCCAC
CGGCTAGGAGAGTGGGAGGGGAGCACTGCGGGCTTGTGCTCCCGGCTCGGAGGGGGCCCCTGGG
CGGCTTAGAGCAGGCCCTGCAGCGGCCCCTGGCGAGCAGGCGCTTGCGGCTGCCTCTTCCGCAG
CTCTTTCCCTGAGACAGCCTCTTCCTCCTCAGCCACGTGCTGCTGTTGTGGGGCTTCTGAGCTT
TGTTCCTTGCAGAGGGACCGGGGACCCCTCAGCCGCTTCGGTGTGGGGCTTAGCTAGAGACAGG
GCGGGTGGCAGGCGGCAGGCTGCAAGCAGGCAGGCCACCCGGGGCCCAGAGCCCACAGCGCTGA
GCCCGGAGCCGGTGGCCCTGCTTGCCCGGGCCCACCTCCCATGGTGCCTGCAGTGCAAAGTCCC
GTCCACAAGGGGTCGGCACCAAAGGACTTTTAGAAAGGATTCTTTGCCGTTTTCTTTTTCTTTC
TTCCTTTTGCTTT

hide sequence

RefSeq Acc Id:

XM_013521967 ⟹ XP_013377421

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955466	681,701 - 729,995 (-)	NCBI

Sequence:

show sequence

GTATACAGCTCTGTGTCAGCGGCTGCCTCTCCGGTGGAGCCTCTGAGGCCGGGGTGGGGTAGAG
CTGGGCGGTCTTTGAAAGCTCCGTCGTGCCCAGCTGATGTCCAGGTGCTGGCTTTAAGATTCTT
ACCTCTGGATTTTAAATTTTGTCTTTTTAATAAAACTTGGACGGATAAAAGATGTGCCATGGCA
GGATAGCACCAAAGAGCAACTCAGCATTGGTTGTGGCCTCCGTGGGACATGGAATGTTCCTTCC
TCTGGTGATCCTTAGCACGCTGCTTGGAGACGGACTTGCTTCAGTGTGTCCCCTGCCCCCGGGG
CCAGAAAATGGTGGCTACATCTGCCACCCCAAGCCCTGCAGAGACCCCCTGGCCGCAGGCAGCG
TCGTGGAGTACCTGTGTGCGGAAGGCTACATGCTAAAGGGGGACTACAAGTACCTGACGTGTAA
GGATGGCGAGTGGAAGCCGGCCATGGAGATCAGCTGCCGTCTCAACGAGGACAAAGAAACCCAC
ACGTCACTTGGAGTCCCCACGCTGTCCATAGTGGCTTCCACTGCCAGCTCCGTGGCACTCATTC
TCCTCCTCGTGGTGCTGTTCGTGCTGCTGCAGCCAAAGCTGAAGTCTTTCCATCACAGCAGGCG
TGACCAAGGGGTGTCTGGGGACCAGGTCTCCATCATGGTGGATGGGGTGCAGGTTGCACTGCCT
TCATACGAGGAGGCTGTGTACGGCAGTTCCGGTCACTGCATGCCGCCCGCAGACCCCAGAGTGC
CCATCGTGCTGTCAGAAGGGGCTGGGCCCAGTGGCAGGGGCCTGCCAAGGGAGCAGCAGGGCCA
GGCGGCCTGCTCTTCTGCGGGTGGGGAGGAAGAGGCCCCGGGCCAGTCGGGACTGTGTGAAGCC
TGGGGCTCCCAGGGCTCAGAGACTGTGATGGTGCATCAAGCCACCACCTCTTCCTGGGTGGCTG
GCTCAGGGGGCAGCCGGCCGGCACACAGAGAAGCCACAGATTCGGAGAACAGCGACATACAAAG
CCTTTTGTCCCTCACATCAGAGGAGTACACAGATGATATCCCGCTGTTGAAAGAAGCGTGAGGG
CTGCGGCCAGCCTCTCTCCTCTCTGAAGGTCTTCTCCACCCTTCCTCGCGCTCCCCGTGGGTTT
GAGCACCCTGCACTCCAGCCACCCCACCCGGATACCTGAGCTGCCACCTGTTTATCGGTGTGTC
TCTGAGGGCCTGCAGGCCACCTCACTGGAAACTCAAGGAAGATTCTCGCCATCTGCTTGGACAG
CTGGAGCAGCTGGCTCTTTGCCTGGCCCAGTCTTCCCGTCTTTTGGGATGTATTTGAATGTGCT
GGATCGAACCCTTCCTTTCCCTGAGCCTCTGAGCCCCTTCCAGCCCGCACCGTGGTGGCAGCCC
CGCAGCCCGCGTGGGGCTGGGCGCCACCGTGCTCACTTGTGCCTTCCCCAGCCCCGCCTCGTCT
CCCTGCCGCGCAGGCCTGCCGCTGTCCACAGCCTTCGTGGCTGCTGCCCCTGCCCTCACAGGAG
CTGAGCTAAGAGTGAGAGAGCCTCTGAGGCACGAGAGGCTTTCACTGGGGCAGATGTGGGGCCC
TGGGTTGACATGGTGGCACGTTTCCTTGGCTGAGAATAGAGAATTTGGAAAATCATGCCAAAGC
CATCCCAGCACCTGTCCAGCTCAGGTGCAGGCTGCTGGCCCTGTGCAGAGTTTCCAAGAAGCAT
CCCGAAGATGCTGAGGGAGGGAAAGAAGATGACTGGTGATGACTGTCTTCCTAATATGCAAGTT
CTCACTCCGTACTTCCAGCGTTGCACCTTGGCCTTGGTCTTTTCGTTCCCTGGATGCGGGGAGT
TGCATGCCGCCTCCTGGGCTTCATCCCAGGCAGCTCTGGCTGCTTTGCTGCCCACAGGGCCTGA
GGCACATCATCCCAGGAGTTCTGAGATGCCATCCAACACTCACCTGGTCACTGGCAGTCTGGGC
AAGGTGCCGCTTTCTGGGTTTGTGGTGACGGAGGGGAGGCCGAGAGGCACAGTTCCCAGGCAGC
TGCAGGCAGCTCCAGCCTGGCCCTGAGGGTCCTCCTCACCGCGGTCATGTGCCTTAGTAACTGT
GCCCAGGAAGTGGCCTGCTGCCTGCTGCACCTCTGCTTTTCCTGCTTCTGCTCTTCCCGGTGCC
CTGCACACGTCGTGGCTGACAAGCCGTTCCTGTCTTCCCTGCCCTCTGGGGGAGGAGCTGAGAA
AGGGTCCACAGCACCCCTTGCCTTACTGACCGAGGTGGGCAAACGGGTGCCCCCAGCCTGGCTC
CCGGGTCCCTCTAGATGGAAGCCGGGGGTGTGGATGCTGGAGGGAAGCCACAGCAATGGGGCGC
TCTGGGCGTCTCCCCCGCGCCCCCTCGGCGCTGCGGTGAGTGTGGGAAGGCTGGGCAGACGAGC
TCCACTGGGCTGCTACCTTCTGGCGACAGACGTGGCATTAAGGAATGTTTGCTTTTGCTTTTTT
TTTTCCCCCTGATACACTGGGGCTGGGAAACCTCGCCGCTCACTCTGCTGCACCTCTGCTCCTC
CCGAGCAGCTCTGGTGTGGTAAAAATAATACAAAGCCCGGTTCAGGACCTGACCTAACAGGGTT
AGCTCCAGGCACGGGTGGCCTGAAGCTGGGGGAAGGGGCTTCTCCCCCCGCCCCCCGCCACCCC
TCTGCCTCGTTCTCACAACGCACTTTACTCCCTGGTCATGCCTGGCCTCCTGCTGCCCCTCATC
TTCTTTCCTCTCAGGGTAAGGGCAGTGCCCGTTGTGCCTGCTGGCCGCTCCCACACGTCCCAGT
CACCCCGCAGCCCCTCTGTTGTGCTCAGAATCAGGCAGGCGAAGTCAGGTAGGGAACGGGTTGG
AGAAGGTGCCAGAGTGGAAGGCTGAGCCTGAGGGAGGAGAGACCTGTCTCAGCAGTTGCTGGCA
TGGACCCCGCAGAGGGGTCCGAAGGCCTGGCTGCCTTCCCACGCGGACCCTCCTTGAGGCGCAC
CTGTACCCTTGCCCCCTCTAGGACAGGGCCCGTGAGAAGTGGGAAGGCGAGGCTGGAGTCTCAG
AGCTGAGCCTTTGCTTTTATCTTCCACCCTTCCGAAACCTGAATTCTGTTCTAGCACATTTGGT
AAATAGAAGAGCCTGCCCTTTTCTGGGTAGTTGCTCTGGGGTCTTGTCCACTCAGAGGTTGCAC
TTTTATTTCAGGTTTTCTCCGCTGATGGCTCCTTCCTTCTCACCCCGAGTCCACGCTGCCGGGG
TCCACAACCCAGGCCTGCCCACCGGCTAGGAGAGTGGGAGGGGAGCACTGCGGGCTTGTGCTCC
CGGCTCGGAGGGGGCCCCTGGGCGGCTTAGAGCAGGCCCTGCAGCGGCCCCTGGCGAGCAGGCG
CTTGCGGCTGCCTCTTCCGCAGCTCTTTCCCTGAGACAGCCTCTTCCTCCTCAGCCACGTGCTG
CTGTTGTGGGGCTTCTGAGCTTTGTTCCTTGCAGAGGGACCGGGGACCCCTCAGCCGCTTCGGT
GTGGGGCTTAGCTAGAGACAGGGCGGGTGGCAGGCGGCAGGCTGCAAGCAGGCAGGCCACCCGG
GGCCCAGAGCCCACAGCGCTGAGCCCGGAGCCGGTGGCCCTGCTTGCCCGGGCCCACCTCCCAT
GGTGCCTGCAGTGCAAAGTCCCGTCCACAAGGGGTCGGCACCAAAGGACTTTTAGAAAGGATTC
TTTGCCGTTTTCTTTTTCTTTCTTCCTTTTGCTTT

hide sequence

Protein Sequences


Protein RefSeqs	XP_013377419	(Get FASTA)	NCBI Sequence Viewer
	XP_013377420	(Get FASTA)	NCBI Sequence Viewer
	XP_013377421	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000006896
	ENSCLAP00000006896.1

RefSeq Acc Id:

XP_013377419 ⟸ XM_013521965

- UniProtKB:

A0A8C2UWM6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MCHGRIAPKSNSALVVASVGHGMFLPLVILSTLLGDGLASVCPLPPGPENGGYICHPKPCRDPL
AAGSVVEYLCAEGYMLKGDYKYLTCKDGEWKPAMEISCRLNEDKETHTSLGVPTLSIVASTASS
VALILLLVVLFVLLQPKLKSFHHSRRDQGVSGDQVSIMVDGVQVALPSYEEAVYGSSGHCMPPA
DPRVPIVLSEGAGPSGRGLPREQQGQAACSSAGGEEEAPGQSGLCEAWGSQGSETVMVHQATTS
SWVAGSGGSRPAHREATDSENSDIQSLLSLTSEEYTDDIPLLKEA

hide sequence

RefSeq Acc Id:

XP_013377421 ⟸ XM_013521967

- UniProtKB:

A0A8C2UWM6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MCHGRIAPKSNSALVVASVGHGMFLPLVILSTLLGDGLASVCPLPPGPENGGYICHPKPCRDPL
AAGSVVEYLCAEGYMLKGDYKYLTCKDGEWKPAMEISCRLNEDKETHTSLGVPTLSIVASTASS
VALILLLVVLFVLLQPKLKSFHHSRRDQGVSGDQVSIMVDGVQVALPSYEEAVYGSSGHCMPPA
DPRVPIVLSEGAGPSGRGLPREQQGQAACSSAGGEEEAPGQSGLCEAWGSQGSETVMVHQATTS
SWVAGSGGSRPAHREATDSENSDIQSLLSLTSEEYTDDIPLLKEA

hide sequence

RefSeq Acc Id:

XP_013377420 ⟸ XM_013521966

- UniProtKB:

A0A8C2UWM6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MCHGRIAPKSNSALVVASVGHGMFLPLVILSTLLGDGLASVCPLPPGPENGGYICHPKPCRDPL
AAGSVVEYLCAEGYMLKGDYKYLTCKDGEWKPAMEISCRLNEDKETHTSLGVPTLSIVASTASS
VALILLLVVLFVLLQPKLKSFHHSRRDQGVSGDQVSIMVDGVQVALPSYEEAVYGSSGHCMPPA
DPRVPIVLSEGAGPSGRGLPREQQGQAACSSAGGEEEAPGQSGLCEAWGSQGSETVMVHQATTS
SWVAGSGGSRPAHREATDSENSDIQSLLSLTSEEYTDDIPLLKEA

hide sequence

Ensembl Acc Id:

ENSCLAP00000006896 ⟸ ENSCLAT00000007008

Protein Domains

Sushi

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000004857	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000007008	ENTREZGENE
	ENSCLAT00000007008.1	UniProtKB/TrEMBL
Gene3D-CATH	Complement Module, domain 1	UniProtKB/TrEMBL
InterPro	SUSD6	UniProtKB/TrEMBL
	Sushi/SCR/CCP_sf	UniProtKB/TrEMBL
	Sushi_SCR_CCP_dom	UniProtKB/TrEMBL
NCBI Gene	Kiaa0247	ENTREZGENE
PANTHER	PTHR46839	UniProtKB/TrEMBL
	SUSHI DOMAIN-CONTAINING PROTEIN 6	UniProtKB/TrEMBL
Pfam	Sushi	UniProtKB/TrEMBL
PROSITE	SUSHI	UniProtKB/TrEMBL
SMART	CCP	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57535	UniProtKB/TrEMBL
UniProt	A0A8C2UWM6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-08-25	Susd6	sushi domain containing 6	Kiaa0247	KIAA0247 ortholog	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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