Pard6b (par-6 family cell polarity regulator beta) - Rat Genome Database

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Gene: Pard6b (par-6 family cell polarity regulator beta) Chinchilla lanigera
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Symbol: Pard6b
Name: par-6 family cell polarity regulator beta
RGD ID: 8820750
Description: INVOLVED IN protein-containing complex assembly (ortholog); PARTICIPATES IN protein kinase C (PKC) signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); FOUND IN apical part of cell (ortholog); apical plasma membrane (ortholog); bicellular tight junction (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: par-6 partitioning defective 6 homolog beta; partitioning defective 6 homolog beta
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554457,625,303 - 7,638,654 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554457,625,303 - 7,638,652 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Pard6b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554457,625,303 - 7,638,654 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554457,625,303 - 7,638,652 (-)NCBIChiLan1.0ChiLan1.0
PARD6B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382050,731,580 - 50,753,741 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2050,731,580 - 50,756,795 (+)EnsemblGRCh38hg38GRCh38
GRCh372049,348,117 - 49,370,278 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362048,781,488 - 48,803,685 (+)NCBINCBI36Build 36hg18NCBI36
Build 342048,781,730 - 48,800,432NCBI
Celera2046,052,360 - 46,074,607 (+)NCBICelera
Cytogenetic Map20q13.13NCBI
HuRef2046,096,474 - 46,118,701 (+)NCBIHuRef
CHM1_12049,253,147 - 49,275,696 (+)NCBICHM1_1
T2T-CHM13v2.02052,501,886 - 52,524,081 (+)NCBIT2T-CHM13v2.0
Pard6b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392167,922,924 - 167,943,123 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2167,922,924 - 167,943,123 (+)EnsemblGRCm39 Ensembl
GRCm382168,081,004 - 168,101,203 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2168,081,004 - 168,101,203 (+)EnsemblGRCm38mm10GRCm38
MGSCv372167,906,504 - 167,926,703 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362167,772,490 - 167,790,415 (+)NCBIMGSCv36mm8
Celera2174,023,444 - 174,043,724 (+)NCBICelera
Cytogenetic Map2H3NCBI
cM Map288.24NCBI
Pard6b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83177,209,429 - 177,230,509 (+)NCBIGRCr8
mRatBN7.23156,790,540 - 156,811,620 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3156,790,540 - 156,811,622 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3160,585,351 - 160,606,433 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03169,084,429 - 169,105,513 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03166,826,135 - 166,847,217 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03164,822,111 - 164,843,395 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3164,822,111 - 164,843,395 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03170,968,975 - 170,990,259 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43159,230,673 - 159,251,755 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13159,136,214 - 159,157,286 (+)NCBI
Celera3155,366,567 - 155,386,818 (+)NCBICelera
Cytogenetic Map3q42NCBI
PARD6B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22156,480,187 - 56,502,616 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12056,473,355 - 56,495,732 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02047,076,007 - 47,098,321 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12048,203,994 - 48,223,814 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2048,203,900 - 48,229,376 (+)Ensemblpanpan1.1panPan2
PARD6B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12437,108,441 - 37,122,118 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2436,349,345 - 36,365,076 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02437,816,193 - 37,832,591 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2437,816,255 - 37,832,600 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12437,052,429 - 37,068,151 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02437,186,155 - 37,201,876 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02437,730,480 - 37,746,871 (+)NCBIUU_Cfam_GSD_1.0
Pard6b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640188,500,105 - 188,519,486 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365143,953,753 - 3,966,312 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365143,953,748 - 3,967,871 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PARD6B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1752,195,041 - 52,213,843 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11752,195,360 - 52,211,504 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21758,650,703 - 58,651,538 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.21758,583,393 - 58,588,704 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PARD6B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1213,218,514 - 13,239,206 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl213,215,929 - 13,237,421 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605061,648,766 - 61,668,024 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pard6b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247904,939,592 - 4,960,531 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247904,939,753 - 4,960,432 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000013562   ⟹   ENSCLAP00000013409
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554457,625,303 - 7,638,654 (-)Ensembl
RefSeq Acc Id: XM_013518368   ⟹   XP_013373822
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554457,625,303 - 7,638,652 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013373822 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000013409
  ENSCLAP00000013409.1
RefSeq Acc Id: XP_013373822   ⟸   XM_013518368
- UniProtKB: A0A8C2VDU2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000013409   ⟸   ENSCLAT00000013562
Protein Domains
PB1   PDZ


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009267 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000013562 ENTREZGENE
  ENSCLAT00000013562.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.42.10 UniProtKB/TrEMBL
InterPro PAR6_homolog UniProtKB/TrEMBL
  PB1-like UniProtKB/TrEMBL
  PB1_dom UniProtKB/TrEMBL
  PB1_Par6 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
NCBI Gene Pard6b ENTREZGENE
PANTHER PAR-6-RELATED UniProtKB/TrEMBL
  PTHR14102:SF4 UniProtKB/TrEMBL
Pfam PB1 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
PROSITE PB1 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
SMART PB1 UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
Superfamily-SCOP CAD & PB1 domains UniProtKB/TrEMBL
  SSF50156 UniProtKB/TrEMBL
UniProt A0A8C2VDU2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Pard6b  par-6 family cell polarity regulator beta    par-6 partitioning defective 6 homolog beta (C. elegans)  Symbol and/or name change 5135510 APPROVED