Psca (prostate stem cell antigen) - Rat Genome Database

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Gene: Psca (prostate stem cell antigen) Chinchilla lanigera
Analyze
Symbol: Psca
Name: prostate stem cell antigen
RGD ID: 8782991
Description: ENCODES a protein that exhibits acetylcholine receptor binding (ortholog); INVOLVED IN negative regulation of ERK1 and ERK2 cascade (ortholog); regulation of neurotransmitter receptor activity (ortholog); ASSOCIATED WITH duodenal ulcer (ortholog); Helicobacter Infections (ortholog); linitis plastica (ortholog); FOUND IN plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554541,425,255 - 1,429,786 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554541,425,255 - 1,429,786 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data
Psca
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554541,425,255 - 1,429,786 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554541,425,255 - 1,429,786 (+)NCBIChiLan1.0ChiLan1.0
PSCA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388142,670,297 - 142,682,725 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8142,670,308 - 142,682,725 (+)EnsemblGRCh38hg38GRCh38
GRCh378143,751,715 - 143,764,143 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 368143,758,877 - 143,761,145 (+)NCBINCBI36Build 36hg18NCBI36
Build 348143,758,914 - 143,761,107NCBI
Celera8140,062,953 - 140,075,307 (+)NCBICelera
Cytogenetic Map8q24.3NCBI
HuRef8139,004,448 - 139,016,803 (+)NCBIHuRef
CHM1_18143,791,995 - 143,804,414 (+)NCBICHM1_1
T2T-CHM13v2.08143,813,825 - 143,826,193 (+)NCBIT2T-CHM13v2.0
Psca
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391574,586,688 - 74,588,914 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1574,586,688 - 74,588,918 (+)EnsemblGRCm39 Ensembl
GRCm381574,714,839 - 74,717,065 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1574,714,839 - 74,717,069 (+)EnsemblGRCm38mm10GRCm38
MGSCv371574,545,269 - 74,547,495 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361574,542,094 - 74,544,324 (+)NCBIMGSCv36mm8
Celera1576,219,780 - 76,222,006 (+)NCBICelera
Cytogenetic Map15D3NCBI
cM Map1534.26NCBI
Psca
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87108,483,974 - 108,492,098 (+)NCBIGRCr8
mRatBN7.27106,598,203 - 106,603,114 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7106,595,284 - 106,609,746 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.07116,090,189 - 116,091,955 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7116,090,189 - 116,091,955 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07115,995,492 - 115,997,258 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.07115,857,434 - 115,858,209 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47112,823,862 - 112,835,190 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7103,002,175 - 103,003,865 (+)NCBICelera
Cytogenetic Map7q34NCBI
PSCA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27160,116,213 - 160,118,993 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18135,641,454 - 135,645,203 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08139,384,002 - 139,394,993 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18142,435,849 - 142,438,401 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8142,435,849 - 142,438,401 (+)Ensemblpanpan1.1panPan2
PSCA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11336,773,434 - 36,776,740 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1336,773,875 - 36,776,194 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1336,649,736 - 36,652,787 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01337,177,153 - 37,180,204 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1337,177,339 - 37,180,204 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11336,895,880 - 36,898,931 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01336,985,523 - 36,988,575 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01337,407,594 - 37,410,646 (+)NCBIUU_Cfam_GSD_1.0
Psca
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244053031,716,908 - 1,719,360 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364709,142,327 - 9,145,722 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364709,143,003 - 9,145,438 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSCA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl41,479,879 - 1,482,354 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.141,479,872 - 1,484,245 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PSCA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18136,925,881 - 136,929,257 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660393,025,823 - 3,028,932 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Psca
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473513,918,508 - 13,920,881 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473513,918,508 - 13,920,888 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000012399   ⟹   ENSCLAP00000012257
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554541,425,255 - 1,429,786 (+)Ensembl
RefSeq Acc Id: XM_005395732   ⟹   XP_005395789
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554541,425,255 - 1,429,786 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005395789 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000012257
  ENSCLAP00000012257.1
RefSeq Acc Id: XP_005395789   ⟸   XM_005395732
- UniProtKB: A0A8C2VD64 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000012257   ⟸   ENSCLAT00000012399
Protein Domains
UPAR/Ly6


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008458 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000012399 ENTREZGENE
  ENSCLAT00000012399.1 UniProtKB/TrEMBL
Gene3D-CATH 2.10.60.10 UniProtKB/TrEMBL
InterPro CD59_antigen_CS UniProtKB/TrEMBL
  Ly-6/neurotoxin-like_GPI-ap UniProtKB/TrEMBL
  LY6_UPA_recep-like UniProtKB/TrEMBL
  Snake_toxin-like_sf UniProtKB/TrEMBL
NCBI Gene Psca ENTREZGENE
PANTHER PROSTATE STEM CELL ANTIGEN UniProtKB/TrEMBL
  UPAR/LY6 DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam UPAR_LY6 UniProtKB/TrEMBL
PROSITE LY6_UPAR UniProtKB/TrEMBL
SMART SM00134 UniProtKB/TrEMBL
Superfamily-SCOP SSF57302 UniProtKB/TrEMBL
UniProt A0A8C2VD64 ENTREZGENE, UniProtKB/TrEMBL