Tanc1 (tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1) - Rat Genome Database

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Gene: Tanc1 (tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1) Chinchilla lanigera
Analyze
Symbol: Tanc1
Name: tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1
RGD ID: 8775609
Description: INVOLVED IN dendritic spine maintenance (ortholog); myoblast fusion (ortholog); regulation of postsynapse organization (ortholog); ASSOCIATED WITH autistic disorder (ortholog); intellectual disability (ortholog); FOUND IN axon terminus (ortholog); dendrite (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544914,353,693 - 14,530,861 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544914,353,693 - 14,586,010 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Tanc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544914,353,693 - 14,530,861 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544914,353,693 - 14,586,010 (-)NCBIChiLan1.0ChiLan1.0
TANC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382158,968,640 - 159,232,659 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2158,968,640 - 159,232,659 (+)EnsemblGRCh38hg38GRCh38
GRCh372159,825,152 - 160,089,170 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362159,533,392 - 159,797,416 (+)NCBINCBI36Build 36hg18NCBI36
Celera2153,441,921 - 153,703,650 (+)NCBICelera
Cytogenetic Map2q24.2NCBI
HuRef2151,714,007 - 151,975,495 (+)NCBIHuRef
CHM1_12159,831,431 - 160,095,361 (+)NCBICHM1_1
T2T-CHM13v2.02159,430,678 - 159,692,453 (+)NCBIT2T-CHM13v2.0
Tanc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39259,442,167 - 59,676,557 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl259,442,386 - 59,676,493 (+)EnsemblGRCm39 Ensembl
GRCm38259,611,821 - 59,846,213 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl259,612,042 - 59,846,149 (+)EnsemblGRCm38mm10GRCm38
MGSCv37259,450,101 - 59,684,206 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36259,412,883 - 59,646,988 (+)NCBIMGSCv36mm8
Celera261,303,578 - 61,541,797 (+)NCBICelera
Cytogenetic Map2C1.1NCBI
cM Map233.93NCBI
Tanc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8364,508,037 - 64,741,826 (+)NCBIGRCr8
mRatBN7.2344,099,387 - 44,335,478 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl344,134,016 - 44,331,627 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx347,490,202 - 47,687,759 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0356,074,068 - 56,271,326 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0353,843,843 - 54,041,444 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0345,683,773 - 45,917,687 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl345,683,993 - 45,917,745 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0350,829,732 - 51,029,507 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4341,364,205 - 41,563,655 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1341,260,576 - 41,460,027 (+)NCBI
Celera342,180,810 - 42,377,519 (+)NCBICelera
Cytogenetic Map3q21NCBI
TANC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21361,657,390 - 61,921,086 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B61,672,459 - 61,936,049 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B46,251,797 - 46,521,577 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B163,632,616 - 163,895,940 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B163,729,504 - 163,895,940 (+)Ensemblpanpan1.1panPan2
TANC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1364,850,214 - 5,019,453 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl364,899,174 - 5,021,132 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha364,935,609 - 5,158,595 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0364,919,381 - 5,142,245 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1364,936,974 - 5,160,449 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0364,980,074 - 5,203,129 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0365,022,023 - 5,245,748 (+)NCBIUU_Cfam_GSD_1.0
Tanc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303121,965,704 - 122,189,685 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646919,425,479 - 19,651,976 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493646919,428,035 - 19,651,913 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TANC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1565,920,292 - 66,165,991 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11565,920,168 - 66,166,000 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21573,290,746 - 73,423,221 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TANC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11044,344,779 - 44,616,653 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1044,376,139 - 44,614,987 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040154,944,754 - 155,112,236 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tanc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247326,421,066 - 6,672,213 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247326,421,061 - 6,672,724 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000006534   ⟹   ENSCLAP00000006427
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495544914,353,693 - 14,530,861 (-)Ensembl
RefSeq Acc Id: XM_005393379   ⟹   XP_005393436
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544914,353,693 - 14,586,010 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005393380   ⟹   XP_005393437
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544914,353,693 - 14,585,895 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005393381   ⟹   XP_005393438
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544914,353,693 - 14,585,895 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013518760   ⟹   XP_013374214
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544914,353,693 - 14,586,010 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013518761   ⟹   XP_013374215
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544914,353,693 - 14,586,010 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013518762   ⟹   XP_013374216
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544914,353,693 - 14,586,010 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013518763   ⟹   XP_013374217
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544914,353,693 - 14,530,861 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013518764   ⟹   XP_013374218
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544914,353,693 - 14,585,880 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013518765   ⟹   XP_013374219
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544914,353,693 - 14,504,097 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013518767   ⟹   XP_013374221
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544914,353,693 - 14,586,010 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005393436   ⟸   XM_005393379
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005393438   ⟸   XM_005393381
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_005393437   ⟸   XM_005393380
- Peptide Label: isoform X6
- UniProtKB: A0A8C2UVK0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013374221   ⟸   XM_013518767
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_013374216   ⟸   XM_013518762
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013374214   ⟸   XM_013518760
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013374215   ⟸   XM_013518761
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013374218   ⟸   XM_013518764
- Peptide Label: isoform X6
- UniProtKB: A0A8C2UVK0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013374217   ⟸   XM_013518763
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_013374219   ⟸   XM_013518765
- Peptide Label: isoform X6
- UniProtKB: A0A8C2UVK0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000006427   ⟸   ENSCLAT00000006534


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000004542 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000006534 ENTREZGENE
  ENSCLAT00000006534.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
  1.25.40.20 UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  Dendritic_Spine_Reg/Scaffold UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
NCBI Gene Tanc1 ENTREZGENE
PANTHER PROTEIN TANC1 UniProtKB/TrEMBL
  ROLLING PEBBLES, ISOFORM B UniProtKB/TrEMBL
Pfam Ank UniProtKB/TrEMBL
  Ank_2 UniProtKB/TrEMBL
  Ank_4 UniProtKB/TrEMBL
PRINTS ANKYRIN UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  TPR UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
  TPR UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/TrEMBL
  SSF48452 UniProtKB/TrEMBL
UniProt A0A8C2UVK0 ENTREZGENE, UniProtKB/TrEMBL