Fate1 (fetal and adult testis expressed 1)

Gene: Fate1 (fetal and adult testis expressed 1) Chinchilla lanigera

Analyze

Symbol:

Fate1

Name:

fetal and adult testis expressed 1

RGD ID:

8774501

Description:

ENCODES a protein that exhibits identical protein binding (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN negative regulation of apoptotic process (ortholog); negative regulation of mitochondrial calcium ion concentration (ortholog); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); hepatocellular carcinoma (ortholog); FOUND IN endoplasmic reticulum (ortholog); mitochondria-associated endoplasmic reticulum membrane contact site (ortholog); mitochondrial outer membrane (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955498	7,237,494 - 7,241,447 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

genetic disease (ISO)

hepatocellular carcinoma (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of apoptotic process (ISO)

negative regulation of mitochondrial calcium ion concentration (ISO)

Cellular Component

endoplasmic reticulum (ISO)

mitochondria-associated endoplasmic reticulum membrane contact site (ISO)

mitochondrial outer membrane (ISO)

Molecular Function

identical protein binding (ISO)

protein binding (ISO)

ubiquitin protein ligase binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Fate1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955498	7,237,494 - 7,241,447 (+)	NCBI	ChiLan1.0	ChiLan1.0

FATE1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	151,716,035 - 151,723,194 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	151,716,035 - 151,723,194 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	150,884,507 - 150,891,666 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	150,635,164 - 150,642,322 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	150,555,075 - 150,562,230	NCBI
Celera	X	151,132,863 - 151,140,021 (+)	NCBI		Celera
Cytogenetic Map	X	q28	NCBI
HuRef	X	139,741,514 - 139,748,665 (+)	NCBI		HuRef
CHM1_1	X	150,759,460 - 150,766,618 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	149,984,347 - 149,991,502 (+)	NCBI		T2T-CHM13v2.0

Fate1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	71,016,592 - 71,032,652 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	71,016,592 - 71,032,652 (+)	Ensembl		GRCm39 Ensembl
GRCm38	X	71,972,986 - 71,989,046 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	71,972,986 - 71,989,046 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	69,218,325 - 69,234,385 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	68,225,706 - 68,241,766 (+)	NCBI		MGSCv36	mm8
Celera	X	62,951,112 - 62,968,151 (+)	NCBI		Celera
Cytogenetic Map	X	A7.3	NCBI
cM Map	X	37.15	NCBI

FATE1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	151,783,720 - 151,791,097 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	151,787,316 - 151,794,702 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	141,274,799 - 141,303,329 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	151,251,944 - 151,260,505 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	151,251,944 - 151,260,686 (+)	Ensembl	panpan1.1		panPan2

FATE1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	119,675,163 - 119,681,819 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	119,675,222 - 119,681,460 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	105,057,988 - 105,064,646 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	121,895,797 - 121,902,455 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	121,895,858 - 121,902,096 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	118,616,049 - 118,622,707 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	121,098,992 - 121,105,650 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	120,981,604 - 120,988,262 (+)	NCBI		UU_Cfam_GSD_1.0

Fate1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	117,220,058 - 117,227,444 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936714	1,029,390 - 1,036,254 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FATE1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	123,099,746 - 123,113,171 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	123,106,086 - 123,113,178 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

FATE1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	126,269,120 - 126,275,053 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	126,269,555 - 126,275,052 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666065	64,062,494 - 64,067,750 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fate1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624883	3,030,776 - 3,033,912 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005406444	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01063146	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01008492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_005406444 ⟹ XP_005406501

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955498	7,237,494 - 7,241,447 (+)	NCBI

Sequence:

show sequence

TATATCTTCTTCTCACTCCTACCACTGCAGAGGAGACGGTGCGAGTGCCTCCTCTGCTCCTGGC
ACCTCGTACATTCTCAGCCGAACCATCCAGCTGAGCAACTGGCAGTGATGGCAGCAGGCCCCCC
CAGCACTAAGGAGGAGACAGAAAGGTGCATCAATGAAGAACTGGTGCGTGGAAGCCCTGGGAGA
GGCCAAGATCACCTGATGATAGCCGATGTACTGGATCATGCATCCCGGTCCGGGGCTGTCTCCC
AGAGGCGTCAGAAGACAGAAACAAAGGCTACTGTCTCCATTTTACCCAAGTCAGCTTGGAATGT
GAATCCCCGCAAGGCCAGGAAAATGGAGCACCAGCAGCAGGTGTCCAGGATTTCCAGAGAGCCA
GGCCACAGTGGCTTTTTCCAGGAGTATCCTGGCATCTTCCAAGACCATCGTGATCAAAACCTGG
GGATAGATCTGCTGACAGAGACTGACCCGGATGAGCTCAATGGACTGGAGCTGGAAATCATAAG
AAGACAGCTGCTTTTGGTCACGGAGCGTCTGTGTGTCCTCGAGGATCAGGATTCCTCCTGGCGC
TTCAAGGAGGCGGTACTGTTCACCGCGGTGTTGACGGCTTGCCTCACCAACCTGTGGCTGTGGA
TGCGCCAGTGACGCTGAGGCTCCCCCTGGCCTGAGCCCACCCTCCACCCTCCCTTTCCTCTGCC
CTCTGCTCCAGGGCTTCTCTTGGGGACCCCATTCCCAGCTCCCAGGCAGCATTGGGCAATTTTT
CAACGCTGCTCAGCCCCTGTGCTTGAGAGGAGGCTGGTGGCGCAGAAGTCTTTTGGAGGGAGAA
GACAGCAGCACCTCGCCCCCACAGTGACACCAGCAGCAGGCCTCTGGGGCCCCAGCTTTCCTTC
TGCTCCATCCCCTGCTTTGCTTTTGGCTTCCTTTCCCCATTTGCTTCCACACTGTGCACAGGGC
TCTGAACACGCTCAATAAAAGCTAAGTGACAGCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005406501	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000001219
	ENSCLAP00000001219.1

RefSeq Acc Id:	XP_005406501 ⟸ XM_005406444
- UniProtKB:	A0A8C2UI02 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAGPPSTKEETERCINEELVRGSPGRGQDHLMIADVLDHASRSGAVSQRRQKTETKATVSILP KSAWNVNPRKARKMEHQQQVSRISREPGHSGFFQEYPGIFQDHRDQNLGIDLLTETDPDELNGL ELEIIRRQLLLVTERLCVLEDQDSSWRFKEAVLFTAVLTACLTNLWLWMRQ hide sequence

Protein Domains

Mff-like

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000000927	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000001260	ENTREZGENE
	ENSCLAT00000001260.1	UniProtKB/TrEMBL
InterPro	FATE1	UniProtKB/TrEMBL
	Mff-like_dom	UniProtKB/TrEMBL
NCBI Gene	Fate1	ENTREZGENE
PANTHER	FETAL AND ADULT TESTIS-EXPRESSED TRANSCRIPT PROTEIN	UniProtKB/TrEMBL
	PTHR21128	UniProtKB/TrEMBL
Pfam	Miff	UniProtKB/TrEMBL
UniProt	A0A8C2UI02	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD