Acap3 (ArfGAP with coiled-coil, ankyrin repeat and PH domains 3) - Rat Genome Database

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Gene: Acap3 (ArfGAP with coiled-coil, ankyrin repeat and PH domains 3) Chinchilla lanigera
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Symbol: Acap3
Name: ArfGAP with coiled-coil, ankyrin repeat and PH domains 3
RGD ID: 8741213
Description: ENCODES a protein that exhibits GTPase activator activity (ortholog); INVOLVED IN neuron migration (ortholog); regulation of neuron projection development (ortholog); ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); congenital myasthenic syndrome 8 (ortholog); dilated cardiomyopathy 1LL (ortholog); FOUND IN growth cone (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554869,495,186 - 9,508,214 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554869,495,087 - 9,508,047 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


1 to 11 of 11 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Acap3Chinchillachromosome 1p36 deletion syndrome  ISOACAP3 (Homo sapiens)8554872ClinVar Annotator: match by term: Chromosome 1p36 deletion syndromeClinVarPMID:25741868
Acap3Chinchillacongenital myasthenic syndrome 8  ISOACAP3 (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital myasthenic syndrome 8ClinVarPMID:24951643 and PMID:28492532
Acap3Chinchilladilated cardiomyopathy 1LL  ISOACAP3 (Homo sapiens)8554872ClinVar Annotator: match by term: Left ventricular noncompaction 8ClinVarPMID:28492532
Acap3ChinchillaEhlers-Danlos syndrome spondylodysplastic type 2  ISOACAP3 (Homo sapiens)8554872ClinVar Annotator: match by term: Ehlers-Danlos syndrome more ...ClinVarPMID:10862081 more ...
Acap3ChinchillaGoldberg-Shprintzen syndrome  ISOACAP3 (Homo sapiens)8554872ClinVar Annotator: match by term: Shprintzen-Goldberg syndromeClinVarPMID:23892090 more ...
Acap3Chinchillaimmunodeficiency 16  ISOACAP3 (Homo sapiens)8554872ClinVar Annotator: match by term: Combined immunodeficiency due to OX40 deficiencyClinVarPMID:10862081 more ...
Acap3Chinchillaimmunodeficiency 38  ISOACAP3 (Homo sapiens)8554872ClinVar Annotator: match by term: Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiencyClinVarPMID:10862081 more ...
Acap3ChinchillaJoubert syndrome 25  ISOACAP3 (Homo sapiens)8554872ClinVar Annotator: match by term: Joubert syndrome 25ClinVarPMID:10862081 more ...
Acap3ChinchillaNeurodevelopmental Disorders  ISOACAP3 (Homo sapiens)8554872ClinVar Annotator: match by term: Neurodevelopmental disorderClinVarPMID:25741868
Acap3ChinchillaPeroxisome Biogenesis Disorder, Complementation Group 7  ISOACAP3 (Homo sapiens)8554872ClinVar Annotator: match by term: Peroxisome biogenesis disorder and complementation group 7ClinVarPMID:10862081 more ...
Acap3ChinchillaShprintzen-Goldberg Craniosynostosis  ISOACAP3 (Homo sapiens)8554872ClinVar Annotator: match by term: Shprintzen-Goldberg syndromeClinVarPMID:23892090 more ...
1 to 11 of 11 rows


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Acap3Chinchillaneuron migration acts_upstream_of_or_withinISOAcap3 (Mus musculus)9068941 PMID:28919417MGIPMID:28919417
Acap3Chinchillaregulation of neuron projection development acts_upstream_of_or_withinISOAcap3 (Mus musculus)9068941 PMID:27330119MGIPMID:27330119

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Acap3Chinchillagrowth cone located_inISOAcap3 (Mus musculus)9068941 PMID:27330119MGIPMID:27330119

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Acap3ChinchillaGTPase activator activity enablesISOAcap3 (Mus musculus)9068941 PMID:27330119MGIPMID:27330119
Acap3Chinchillaprotein binding enablesISOUniProtKB:Q150579068941 PMID:33961781 and PMID:35271311IntActPMID:33961781 and PMID:35271311


#
Reference Title
Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
PMID:22301074   PMID:30032202  



Acap3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554869,495,186 - 9,508,214 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554869,495,087 - 9,508,047 (+)NCBIChiLan1.0ChiLan1.0
ACAP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811,292,391 - 1,307,930 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11,292,390 - 1,309,609 (-)EnsemblGRCh38hg38GRCh38
GRCh3711,227,771 - 1,243,310 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611,218,807 - 1,228,503 (-)NCBINCBI36Build 36hg18NCBI36
Build 3411,268,866 - 1,278,563NCBI
Celera11,337,872 - 1,353,397 (+)NCBICelera
Cytogenetic Map1p36.33NCBI
HuRef1498,970 - 514,519 (-)NCBIHuRef
CHM1_111,213,463 - 1,228,970 (-)NCBICHM1_1
T2T-CHM13v2.01723,917 - 739,479 (-)NCBIT2T-CHM13v2.0
Acap3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394155,976,332 - 155,991,708 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4155,976,279 - 155,991,708 (+)EnsemblGRCm39 Ensembl
GRCm384155,891,875 - 155,907,251 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4155,891,822 - 155,907,251 (+)EnsemblGRCm38mm10GRCm38
MGSCv374155,265,984 - 155,281,360 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364154,735,675 - 154,751,051 (+)NCBIMGSCv36mm8
Celera4158,162,838 - 158,177,746 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map487.66NCBI
Acap3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85171,783,382 - 171,797,709 (+)NCBIGRCr8
mRatBN7.25166,501,150 - 166,515,477 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5166,500,781 - 166,515,481 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5169,205,960 - 169,220,285 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05171,027,381 - 171,041,706 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05170,989,913 - 171,004,239 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05173,340,060 - 173,354,756 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5173,340,060 - 173,354,755 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05176,815,678 - 176,830,374 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45172,749,741 - 172,764,436 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15172,760,695 - 172,773,599 (+)NCBI
Celera5164,701,505 - 164,716,200 (+)NCBICelera
Cytogenetic Map5q36NCBI
ACAP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21226,919,234 - 226,934,998 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11225,615,917 - 225,631,674 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0146,883 - 62,642 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111,248,155 - 1,263,111 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11,249,719 - 1,259,645 (-)Ensemblpanpan1.1panPan2
ACAP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1556,466,833 - 56,482,023 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl556,468,164 - 56,481,913 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha556,543,733 - 56,558,335 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0556,669,651 - 56,684,257 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl556,669,651 - 56,684,280 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1556,660,374 - 56,674,973 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0556,552,661 - 56,567,265 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0556,942,661 - 56,957,269 (-)NCBIUU_Cfam_GSD_1.0
Acap3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505827,615,667 - 27,629,099 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367371,836,897 - 1,848,989 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367371,836,851 - 1,850,279 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACAP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl663,579,304 - 63,593,435 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1663,579,291 - 63,593,429 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2658,048,113 - 58,091,501 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACAP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120130,143,085 - 130,157,716 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20130,143,520 - 130,157,730 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605434,709,327 - 34,724,115 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Acap3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248188,302,957 - 8,314,590 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248188,302,409 - 8,315,878 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.






Ensembl Acc Id: ENSCLAT00000011667   ⟹   ENSCLAP00000011530
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554869,495,186 - 9,508,214 (+)Ensembl
Ensembl Acc Id: ENSCLAT00000011668   ⟹   ENSCLAP00000011531
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554869,495,186 - 9,506,747 (+)Ensembl
RefSeq Acc Id: XM_005404234   ⟹   XP_005404291
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554869,495,087 - 9,508,047 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005404235   ⟹   XP_005404292
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554869,495,087 - 9,508,047 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013504190   ⟹   XP_013359644
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554869,498,663 - 9,508,047 (+)NCBI
Sequence:
Protein RefSeqs XP_005404291 (Get FASTA)   NCBI Sequence Viewer  
  XP_005404292 (Get FASTA)   NCBI Sequence Viewer  
  XP_013359644 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000011530
  ENSCLAP00000011530.1
  ENSCLAP00000011531.1
RefSeq Acc Id: XP_005404291   ⟸   XM_005404234
- Peptide Label: isoform X1
- UniProtKB: A0A8C2V7Q1 (UniProtKB/TrEMBL),   A0A8C2V7Z0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005404292   ⟸   XM_005404235
- Peptide Label: isoform X2
- UniProtKB: A0A8C2V7Z0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013359644   ⟸   XM_013504190
- Peptide Label: isoform X3
- UniProtKB: A0A8C2V7Z0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000011531   ⟸   ENSCLAT00000011668
Ensembl Acc Id: ENSCLAP00000011530   ⟸   ENSCLAT00000011667
Arf-GAP   PH



1 to 40 of 40 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSCLAG00000007949 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000011667 ENTREZGENE
  ENSCLAT00000011667.1 UniProtKB/TrEMBL
  ENSCLAT00000011668.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.220.150 UniProtKB/TrEMBL
  1.20.1270.60 UniProtKB/TrEMBL
  1.25.40.20 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
InterPro ACAP1/2/3-like UniProtKB/TrEMBL
  ACAP3_BAR UniProtKB/TrEMBL
  AH/BAR_dom_sf UniProtKB/TrEMBL
  Ankyrin_rpt UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  ARFGAP/RecO UniProtKB/TrEMBL
  ArfGAP_dom UniProtKB/TrEMBL
  ArfGAP_dom_sf UniProtKB/TrEMBL
  BAR_dom UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  PH_domain UniProtKB/TrEMBL
NCBI Gene Acap3 ENTREZGENE
PANTHER ARF-GAP WITH COILED-COIL, ANK REPEAT AND PH DOMAIN-CONTAINING PROTEIN 3 UniProtKB/TrEMBL
  PTHR23180 UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/TrEMBL
  ArfGap UniProtKB/TrEMBL
  BAR_3 UniProtKB/TrEMBL
  PF00169 UniProtKB/TrEMBL
PRINTS REVINTRACTNG UniProtKB/TrEMBL
PROSITE ANK_REP_REGION UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/TrEMBL
  ARFGAP UniProtKB/TrEMBL
  PH_DOMAIN UniProtKB/TrEMBL
SMART ANK UniProtKB/TrEMBL
  ArfGap UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF103657 UniProtKB/TrEMBL
  SSF48403 UniProtKB/TrEMBL
  SSF57863 UniProtKB/TrEMBL
UniProt A0A8C2V7Q1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2V7Z0 ENTREZGENE, UniProtKB/TrEMBL
1 to 40 of 40 rows