Taf6l (TATA-box binding protein associated factor 6 like) - Rat Genome Database

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Gene: Taf6l (TATA-box binding protein associated factor 6 like) Chinchilla lanigera
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Symbol: Taf6l
Name: TATA-box binding protein associated factor 6 like
RGD ID: 8727798
Description: ENCODES a protein that exhibits transcription coactivator activity (ortholog); INVOLVED IN regulation of DNA-templated transcription (ortholog); regulation of somatic stem cell population maintenance (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH intellectual disability (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); SAGA complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L; TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa; Tmem179b; transmembrane protein 179B
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955599454,157 - 461,573 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955599453,275 - 461,571 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (ISO)
nucleus  (ISO)
SAGA complex  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Taf6l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955599454,157 - 461,573 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955599453,275 - 461,571 (-)NCBIChiLan1.0ChiLan1.0
TAF6L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381162,771,396 - 62,787,342 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1162,771,357 - 62,787,342 (+)EnsemblGRCh38hg38GRCh38
GRCh371162,538,868 - 62,554,814 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361162,295,451 - 62,311,390 (+)NCBINCBI36Build 36hg18NCBI36
Build 341162,295,450 - 62,311,390NCBI
Celera1159,867,457 - 59,883,398 (+)NCBICelera
Cytogenetic Map11q12.3NCBI
HuRef1158,867,598 - 58,883,839 (+)NCBIHuRef
CHM1_11162,421,779 - 62,437,896 (+)NCBICHM1_1
T2T-CHM13v2.01162,760,716 - 62,776,733 (+)NCBIT2T-CHM13v2.0
Taf6l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39198,751,718 - 8,763,781 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl198,751,851 - 8,763,781 (-)EnsemblGRCm39 Ensembl
GRCm38198,774,354 - 8,786,417 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl198,774,487 - 8,786,417 (-)EnsemblGRCm38mm10GRCm38
MGSCv37198,848,844 - 8,860,907 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36198,841,537 - 8,853,308 (-)NCBIMGSCv36mm8
Celera198,534,245 - 8,546,308 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map195.56NCBI
Taf6l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81215,101,266 - 215,113,888 (-)NCBIGRCr8
mRatBN7.21205,672,147 - 205,684,721 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1205,672,149 - 205,684,655 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1214,080,568 - 214,093,107 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01221,115,701 - 221,128,225 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01213,808,404 - 213,820,928 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01224,974,238 - 224,986,819 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1224,974,208 - 224,986,291 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01231,912,411 - 231,924,973 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41211,445,311 - 211,457,839 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11211,603,737 - 211,616,230 (-)NCBI
Celera1203,185,079 - 203,197,607 (-)NCBICelera
Cytogenetic Map1q43NCBI
TAF6L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2963,996,351 - 64,012,435 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11165,038,861 - 65,055,099 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01158,126,480 - 58,142,752 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11161,480,873 - 61,497,306 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1161,485,259 - 61,495,877 (+)Ensemblpanpan1.1panPan2
TAF6L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11853,898,748 - 53,910,836 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1853,898,732 - 53,910,454 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1852,504,785 - 52,516,986 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01854,951,212 - 54,963,414 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1854,951,200 - 54,962,545 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11854,047,828 - 54,060,028 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01853,622,289 - 53,634,489 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01854,418,552 - 54,430,753 (-)NCBIUU_Cfam_GSD_1.0
Taf6l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494710,390,954 - 10,406,109 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936581504,742 - 516,737 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936581504,700 - 519,826 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAF6L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl28,985,628 - 9,000,121 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.128,983,823 - 8,999,990 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.228,331,351 - 8,346,034 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TAF6L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1111,115,862 - 11,138,703 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl111,115,907 - 11,138,739 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038108,458,729 - 108,478,296 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Taf6l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249261,236,154 - 1,247,836 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249261,231,127 - 1,245,178 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000000123   ⟹   ENSCLAP00000000096
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955599454,157 - 461,573 (-)Ensembl
Ensembl Acc Id: ENSCLAT00000000124   ⟹   ENSCLAP00000000097
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955599454,157 - 461,573 (-)Ensembl
RefSeq Acc Id: XM_013510041   ⟹   XP_013365495
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955599453,275 - 461,571 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013365495 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000000096
  ENSCLAP00000000096.1
  ENSCLAP00000000097.1
RefSeq Acc Id: XP_013365495   ⟸   XM_013510041
- Sequence:
Ensembl Acc Id: ENSCLAP00000000096   ⟸   ENSCLAT00000000123
Ensembl Acc Id: ENSCLAP00000000097   ⟸   ENSCLAT00000000124

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000112 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000000123 ENTREZGENE
  ENSCLAT00000000123.1 UniProtKB/TrEMBL
  ENSCLAT00000000124.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
  1.25.40.770 UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/TrEMBL
  Histone-fold UniProtKB/TrEMBL
  TAF6 UniProtKB/TrEMBL
  TAF6_C UniProtKB/TrEMBL
  TAF6_C_sf UniProtKB/TrEMBL
  TAF_TATA-bd_Histone-like_dom UniProtKB/TrEMBL
NCBI Gene Taf6l ENTREZGENE
PANTHER PTHR10221 UniProtKB/TrEMBL
  TAF6-LIKE RNA POLYMERASE II P300/CBP-ASSOCIATED FACTOR-ASSOCIATED FACTOR 65 KDA SUBUNIT 6L UniProtKB/TrEMBL
Pfam TAF UniProtKB/TrEMBL
  TAF6_C UniProtKB/TrEMBL
SMART TAF UniProtKB/TrEMBL
Superfamily-SCOP SSF47113 UniProtKB/TrEMBL
  SSF48371 UniProtKB/TrEMBL
UniProt A0A8C2UGA5_CHILA UniProtKB/TrEMBL
  A0A8C2UJ15_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-11-21 Taf6l  TATA-box binding protein associated factor 6 like  Tmem179b  transmembrane protein 179B  Data merged from RGD:8977503 737654 PROVISIONAL
2016-08-16 Taf6l  TATA-box binding protein associated factor 6 like    TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa  Symbol and/or name change 5135510 APPROVED