Tspyl2 (TSPY like 2) - Rat Genome Database

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Gene: Tspyl2 (TSPY like 2) Chinchilla lanigera
Analyze
Symbol: Tspyl2
Name: TSPY like 2
RGD ID: 8727485
Description: INVOLVED IN negative regulation of cell growth (ortholog); negative regulation of DNA replication (ortholog); regulation of protein kinase activity (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Endometrial Neoplasms (ortholog); syndromic X-linked intellectual disability Lubs type (ortholog); FOUND IN nucleolus (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: testis-specific Y-encoded-like protein 2; TSPY-like 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955475160,964 - 167,440 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955475160,768 - 167,359 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleolus  (ISO)
nucleus  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Tspyl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955475160,964 - 167,440 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955475160,768 - 167,359 (+)NCBIChiLan1.0ChiLan1.0
TSPYL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X53,082,367 - 53,088,540 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX53,082,367 - 53,088,540 (+)EnsemblGRCh38hg38GRCh38
GRCh37X53,111,549 - 53,117,722 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X53,128,290 - 53,134,447 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X52,994,582 - 53,000,742NCBI
CeleraX56,941,043 - 56,947,032 (+)NCBICelera
Cytogenetic MapXp11.22NCBI
HuRefX50,176,603 - 50,182,876 (+)NCBIHuRef
CHM1_1X53,101,666 - 53,107,852 (+)NCBICHM1_1
T2T-CHM13v2.0X52,368,603 - 52,374,776 (+)NCBIT2T-CHM13v2.0
Tspyl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X151,119,847 - 151,125,480 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX151,119,848 - 151,125,421 (-)EnsemblGRCm39 Ensembl
GRCm38X152,336,851 - 152,342,484 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX152,336,852 - 152,342,425 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X148,771,395 - 148,777,027 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X147,677,568 - 147,683,200 (-)NCBIMGSCv36mm8
MGSCv36X129,345,337 - 129,350,969 (-)NCBIMGSCv36mm8
Cytogenetic MapXF3NCBI
cM MapX68.46NCBI
Tspyl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X24,918,851 - 24,924,462 (-)NCBIGRCr8
mRatBN7.2X21,439,478 - 21,445,208 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX21,439,478 - 21,445,089 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX18,904,903 - 18,910,514 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X21,213,054 - 21,218,665 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X22,005,092 - 22,010,703 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X22,408,118 - 22,413,886 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX22,408,118 - 22,413,741 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X64,167,893 - 64,173,685 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X41,836,670 - 41,842,281 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX21,701,208 - 21,706,819 (-)NCBICelera
Cytogenetic MapXq13NCBI
TSPYL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X54,478,286 - 54,484,894 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X54,481,891 - 54,488,499 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X45,293,843 - 45,300,307 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X53,404,276 - 53,409,876 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX53,400,290 - 53,409,275 (+)Ensemblpanpan1.1panPan2
TSPYL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X45,001,112 - 45,008,023 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX45,001,100 - 45,007,869 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX36,422,522 - 36,429,433 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X45,213,793 - 45,220,698 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX45,213,751 - 45,220,698 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X44,709,021 - 44,715,932 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X45,158,674 - 45,165,585 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X45,225,994 - 45,232,905 (+)NCBIUU_Cfam_GSD_1.0
Tspyl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X37,745,381 - 37,751,870 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493675185,248 - 91,000 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493675185,104 - 91,596 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSPYL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX45,909,719 - 45,916,857 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X45,909,688 - 45,916,859 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X51,409,662 - 51,416,824 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TSPYL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X49,218,055 - 49,225,619 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX49,219,525 - 49,225,401 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660863,170,087 - 3,177,558 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tspyl2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624909323,040 - 329,410 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624909322,681 - 329,299 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000004512   ⟹   ENSCLAP00000004428
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955475160,964 - 167,440 (+)Ensembl
RefSeq Acc Id: XM_005401476   ⟹   XP_005401533
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955475160,768 - 167,359 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005401533 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000004428
  ENSCLAP00000004428.1
RefSeq Acc Id: XP_005401533   ⟸   XM_005401476
- UniProtKB: A0A8C2US85 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000004428   ⟸   ENSCLAT00000004512


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003149 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000004512 ENTREZGENE
  ENSCLAT00000004512.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.1500 UniProtKB/TrEMBL
  Nucleosome assembly protein UniProtKB/TrEMBL
InterPro NAP-like_sf UniProtKB/TrEMBL
  NAP_family UniProtKB/TrEMBL
NCBI Gene Tspyl2 ENTREZGENE
PANTHER PTHR11875 UniProtKB/TrEMBL
  TESTIS-SPECIFIC Y-ENCODED-LIKE PROTEIN 2 UniProtKB/TrEMBL
Pfam NAP UniProtKB/TrEMBL
Superfamily-SCOP SSF143113 UniProtKB/TrEMBL
UniProt A0A8C2US85 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Tspyl2  TSPY like 2    TSPY-like 2  Symbol and/or name change 5135510 APPROVED