Cks2 (CDC28 protein kinase regulatory subunit 2) - Rat Genome Database

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Gene: Cks2 (CDC28 protein kinase regulatory subunit 2) Chinchilla lanigera
Analyze
Symbol: Cks2
Name: CDC28 protein kinase regulatory subunit 2
RGD ID: 8724839
Description: ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN fibroblast proliferation (ortholog); meiosis I (ortholog); mitotic cell cycle phase transition (ortholog); ASSOCIATED WITH COVID-19 (ortholog); polycystic ovary syndrome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cyclin-dependent kinases regulatory subunit 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555152,730,148 - 2,736,539 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555152,731,210 - 2,736,296 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cks2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555152,730,148 - 2,736,539 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555152,731,210 - 2,736,296 (-)NCBIChiLan1.0ChiLan1.0
CKS2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38989,311,195 - 89,316,703 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl989,311,195 - 89,316,703 (+)EnsemblGRCh38hg38GRCh38
GRCh37991,926,110 - 91,931,618 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36991,115,933 - 91,121,438 (+)NCBINCBI36Build 36hg18NCBI36
Build 34989,155,666 - 89,161,171NCBI
Celera962,508,275 - 62,513,777 (+)NCBICelera
Cytogenetic Map9q22.2NCBI
HuRef961,759,015 - 61,764,519 (+)NCBIHuRef
CHM1_1992,074,940 - 92,080,445 (+)NCBICHM1_1
T2T-CHM13v2.09101,474,973 - 101,480,477 (+)NCBIT2T-CHM13v2.0
Cks2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391351,799,268 - 51,804,698 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1351,799,268 - 51,804,696 (+)EnsemblGRCm39 Ensembl
GRCm381351,645,232 - 51,650,662 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1351,645,232 - 51,650,660 (+)EnsemblGRCm38mm10GRCm38
MGSCv371351,740,601 - 51,746,031 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361351,657,821 - 51,663,150 (+)NCBIMGSCv36mm8
Celera1352,718,130 - 52,723,560 (+)NCBICelera
Cytogenetic Map13A5NCBI
cM Map1326.12NCBI
Cks2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81713,722,360 - 13,727,519 (-)NCBIGRCr8
mRatBN7.21713,570,611 - 13,575,770 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx1713,499,535 - 13,504,692 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01715,110,401 - 15,115,560 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01713,426,332 - 13,431,489 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01713,587,664 - 13,593,423 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1713,587,665 - 13,593,423 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01715,662,365 - 15,667,466 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41719,423,502 - 19,429,451 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1713,326,389 - 13,331,548 (-)NCBICelera
Cytogenetic Map17p14NCBI
CKS2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21150,144,540 - 50,150,040 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1950,146,928 - 50,152,428 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0960,401,063 - 60,406,507 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1988,447,199 - 88,452,643 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl988,447,197 - 88,452,644 (+)Ensemblpanpan1.1panPan2
CKS2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1196,928,690 - 96,934,154 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl196,880,369 - 96,933,862 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha197,391,498 - 97,396,939 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0197,540,504 - 97,545,952 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl197,540,727 - 97,545,660 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1197,168,293 - 97,173,739 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0196,887,451 - 96,892,883 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0197,645,843 - 97,651,291 (-)NCBIUU_Cfam_GSD_1.0
Cks2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494411,112,845 - 11,118,052 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936780257,410 - 262,654 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936780257,302 - 262,654 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CKS2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14904,809 - 910,289 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114904,762 - 910,292 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214959,086 - 964,616 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CKS2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11299,806,749 - 99,812,202 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603888,128,216 - 88,133,692 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cks2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476523,297,259 - 23,302,711 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476523,297,668 - 23,302,545 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000001110   ⟹   ENSCLAP00000001069
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555152,730,148 - 2,736,539 (-)Ensembl
RefSeq Acc Id: XM_005408880   ⟹   XP_005408937
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555152,731,210 - 2,736,296 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005408937 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000001069
  ENSCLAP00000001069.1
RefSeq Acc Id: XP_005408937   ⟸   XM_005408880
- UniProtKB: A0A8C2UIH9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000001069   ⟸   ENSCLAT00000001110


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000000823 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000001110 ENTREZGENE
  ENSCLAT00000001110.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.170.10 UniProtKB/TrEMBL
InterPro Cyclin-dep_kinase_reg-sub UniProtKB/TrEMBL
  Cyclin-dep_kinase_reg-sub_sf UniProtKB/TrEMBL
NCBI Gene Cks2 ENTREZGENE
PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT 2 UniProtKB/TrEMBL
  CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 UniProtKB/TrEMBL
Pfam CKS UniProtKB/TrEMBL
PRINTS CYCLINKINASE UniProtKB/TrEMBL
PROSITE CKS_1 UniProtKB/TrEMBL
  CKS_2 UniProtKB/TrEMBL
SMART CKS UniProtKB/TrEMBL
Superfamily-SCOP SSF55637 UniProtKB/TrEMBL
UniProt A0A8C2UIH9 ENTREZGENE, UniProtKB/TrEMBL