Hsf5 (heat shock transcription factor 5) - Rat Genome Database

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Gene: Hsf5 (heat shock transcription factor 5) Chinchilla lanigera
Analyze
Symbol: Hsf5
Name: heat shock transcription factor 5
RGD ID: 8724309
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity (ortholog); DNA-binding transcription repressor activity (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN male meiotic nuclear division (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH Fanconi anemia complementation group O (ortholog); hereditary breast ovarian cancer syndrome (ortholog); intellectual disability (ortholog); FOUND IN nucleus (ortholog); XY body (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: heat shock factor protein 5; heat shock transcription factor family member 5
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554514,563,770 - 4,599,720 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554514,564,576 - 4,601,868 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (ISO)
XY body  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Hsf5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554514,563,770 - 4,599,720 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554514,564,576 - 4,601,868 (+)NCBIChiLan1.0ChiLan1.0
HSF5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381758,420,167 - 58,488,408 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1758,420,167 - 58,488,408 (-)EnsemblGRCh38hg38GRCh38
GRCh371756,497,528 - 56,565,769 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361753,852,528 - 53,920,758 (-)NCBINCBI36Build 36hg18NCBI36
Celera1752,959,318 - 53,027,557 (-)NCBICelera
Cytogenetic Map17q22NCBI
HuRef1751,858,055 - 51,926,219 (-)NCBIHuRef
CHM1_11756,562,537 - 56,631,323 (-)NCBICHM1_1
T2T-CHM13v2.01759,288,027 - 59,356,284 (-)NCBIT2T-CHM13v2.0
Hsf5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391187,507,225 - 87,550,715 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1187,507,990 - 87,550,368 (+)EnsemblGRCm39 Ensembl
GRCm381187,616,399 - 87,659,875 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1187,617,164 - 87,659,542 (+)EnsemblGRCm38mm10GRCm38
MGSCv371187,430,666 - 87,473,044 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361187,452,126 - 87,475,737 (+)NCBIMGSCv36mm8
Celera1197,212,509 - 97,254,812 (+)NCBICelera
Cytogenetic Map11CNCBI
cM Map1152.16NCBI
Hsf5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81072,913,730 - 72,957,649 (+)NCBIGRCr8
mRatBN7.21072,417,216 - 72,460,394 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1072,417,298 - 72,460,406 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01074,909,621 - 74,954,128 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1074,910,713 - 74,951,065 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01075,148,859 - 75,194,453 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1071,330,254 - 71,375,064 (+)NCBICelera
Cytogenetic Map10q26NCBI
HSF5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21974,590,793 - 74,659,180 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11779,401,994 - 79,470,483 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01752,495,458 - 52,563,332 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11757,350,222 - 57,417,069 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1757,352,414 - 57,416,968 (-)Ensemblpanpan1.1panPan2
HSF5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1933,064,533 - 33,109,844 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl933,066,726 - 33,109,787 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha932,301,523 - 32,344,994 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0933,872,058 - 33,915,897 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl933,872,170 - 33,915,841 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1932,657,268 - 32,702,542 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0932,940,771 - 32,986,105 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0933,034,437 - 33,078,056 (-)NCBIUU_Cfam_GSD_1.0
Hsf5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560232,395,897 - 32,435,698 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364904,639,310 - 4,677,003 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364904,639,415 - 4,679,153 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HSF5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1234,698,497 - 34,744,554 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11234,696,231 - 34,744,536 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21236,070,816 - 36,117,781 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HSF5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11634,919,264 - 34,977,279 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660775,732,833 - 5,791,676 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hsf5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624871263,794 - 301,574 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624871262,288 - 302,311 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000017300   ⟹   ENSCLAP00000017131
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554514,563,770 - 4,599,720 (+)Ensembl
RefSeq Acc Id: XM_013519059   ⟹   XP_013374513
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554514,564,576 - 4,601,868 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013374513 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000017131
  ENSCLAP00000017131.1
RefSeq Acc Id: XP_013374513   ⟸   XM_013519059
- Sequence:
Ensembl Acc Id: ENSCLAP00000017131   ⟸   ENSCLAT00000017300


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011761 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000017300 ENTREZGENE
  ENSCLAT00000017300.1 UniProtKB/TrEMBL
NCBI Gene Hsf5 ENTREZGENE
UniProt A0A8C2VT55_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Hsf5  heat shock transcription factor 5    heat shock transcription factor family member 5  Symbol and/or name change 5135510 APPROVED