Tns4 (tensin 4) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Tns4 (tensin 4) Chinchilla lanigera
Analyze
Symbol: Tns4
Name: tensin 4
RGD ID: 8717311
Description: INVOLVED IN protein localization (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN focal adhesion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tensin-4
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545115,034,977 - 15,053,253 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545115,036,773 - 15,053,199 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Tns4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545115,034,977 - 15,053,253 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545115,036,773 - 15,053,199 (-)NCBIChiLan1.0ChiLan1.0
TNS4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381740,475,834 - 40,501,623 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1740,475,828 - 40,501,623 (-)EnsemblGRCh38hg38GRCh38
GRCh371738,632,086 - 38,657,875 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361735,885,606 - 35,911,380 (-)NCBINCBI36Build 36hg18NCBI36
Celera1735,292,232 - 35,318,009 (-)NCBICelera
Cytogenetic Map17q21.2NCBI
HuRef1734,425,011 - 34,450,754 (-)NCBIHuRef
CHM1_11738,867,351 - 38,893,125 (-)NCBICHM1_1
T2T-CHM13v2.01741,339,341 - 41,365,145 (-)NCBIT2T-CHM13v2.0
Tns4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391198,956,504 - 98,980,132 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1198,956,504 - 98,980,132 (-)EnsemblGRCm39 Ensembl
GRCm381199,065,678 - 99,089,306 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1199,065,678 - 99,089,306 (-)EnsemblGRCm38mm10GRCm38
MGSCv371198,926,992 - 98,950,620 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361198,881,769 - 98,905,392 (-)NCBIMGSCv36mm8
Celera11108,731,633 - 108,755,886 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1162.92NCBI
Tns4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81084,518,179 - 84,537,558 (-)NCBIGRCr8
mRatBN7.21084,021,965 - 84,041,346 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1084,021,966 - 84,041,346 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1088,965,870 - 88,985,251 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01088,463,984 - 88,483,365 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01083,856,113 - 83,875,400 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01086,977,504 - 87,001,256 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1086,977,505 - 87,001,256 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01086,772,613 - 86,797,011 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41087,849,160 - 87,868,697 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11087,863,530 - 87,883,067 (-)NCBI
Celera1082,763,275 - 82,782,623 (-)NCBICelera
Cytogenetic Map10q31NCBI
TNS4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21924,458,525 - 24,479,097 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11726,347,407 - 26,374,059 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01716,786,709 - 16,813,358 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11717,012,088 - 17,037,874 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1717,012,088 - 17,037,868 (+)Ensemblpanpan1.1panPan2
TNS4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1922,137,012 - 22,159,043 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl922,140,236 - 22,157,634 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha921,609,767 - 21,631,744 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0922,929,768 - 22,951,745 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl922,929,840 - 22,950,336 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1921,704,122 - 21,726,103 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0921,963,011 - 21,984,982 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0922,087,513 - 22,109,496 (+)NCBIUU_Cfam_GSD_1.0
Tns4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560221,547,558 - 21,568,646 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649015,506,290 - 15,527,607 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649015,506,501 - 15,527,552 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNS4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1221,924,226 - 21,952,189 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11221,924,216 - 21,952,187 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21222,235,322 - 22,261,026 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TNS4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11665,687,972 - 65,705,437 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1665,688,231 - 65,705,968 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607736,531,395 - 36,590,613 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tns4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247952,823,840 - 2,836,212 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247952,820,328 - 2,841,034 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000020285   ⟹   ENSCLAP00000020092
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495545115,034,977 - 15,053,253 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000020286   ⟹   ENSCLAP00000020093
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495545115,034,977 - 15,053,253 (-)Ensembl
RefSeq Acc Id: XM_005394360   ⟹   XP_005394417
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545115,036,773 - 15,053,194 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013519361   ⟹   XP_013374815
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545115,036,773 - 15,053,195 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013519362   ⟹   XP_013374816
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545115,036,773 - 15,053,195 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001235981
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495545115,040,574 - 15,053,199 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005394417 (Get FASTA)   NCBI Sequence Viewer  
  XP_013374815 (Get FASTA)   NCBI Sequence Viewer  
  XP_013374816 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000020092.1
  ENSCLAP00000020093
  ENSCLAP00000020093.1
RefSeq Acc Id: XP_005394417   ⟸   XM_005394360
- Peptide Label: isoform X1
- UniProtKB: A0A8C2YSI6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013374815   ⟸   XM_013519361
- Peptide Label: isoform X2
- UniProtKB: A0A8C2YSI6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013374816   ⟸   XM_013519362
- Peptide Label: isoform X3
- UniProtKB: A0A8C2YSI6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000020092   ⟸   ENSCLAT00000020285
RefSeq Acc Id: ENSCLAP00000020093   ⟸   ENSCLAT00000020286
Protein Domains
SH2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000013766 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000020285.1 UniProtKB/TrEMBL
  ENSCLAT00000020286 ENTREZGENE
  ENSCLAT00000020286.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
  3.30.505.10 UniProtKB/TrEMBL
InterPro PH-like_dom_sf UniProtKB/TrEMBL
  PTB UniProtKB/TrEMBL
  SH2 UniProtKB/TrEMBL
  SH2_dom_sf UniProtKB/TrEMBL
  Tensin_PTB UniProtKB/TrEMBL
NCBI Gene Tns4 ENTREZGENE
PANTHER TENSIN UniProtKB/TrEMBL
  TENSIN-4 UniProtKB/TrEMBL
Pfam PTB UniProtKB/TrEMBL
  SH2 UniProtKB/TrEMBL
PROSITE SH2 UniProtKB/TrEMBL
SMART SH2 UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF55550 UniProtKB/TrEMBL
UniProt A0A8C2VT11_CHILA UniProtKB/TrEMBL
  A0A8C2YSI6 ENTREZGENE, UniProtKB/TrEMBL