Znf282 (zinc finger protein 282) - Rat Genome Database

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Gene: Znf282 (zinc finger protein 282) Chinchilla lanigera
Analyze
Symbol: Znf282
Name: zinc finger protein 282
RGD ID: 8715082
Description: ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554914,458,051 - 4,479,143 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554914,457,963 - 4,480,732 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Znf282
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554914,458,051 - 4,479,143 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554914,457,963 - 4,480,732 (+)NCBIChiLan1.0ChiLan1.0
ZNF282
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387149,195,546 - 149,226,243 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7149,195,546 - 149,226,243 (+)EnsemblGRCh38hg38GRCh38
GRCh377148,892,638 - 148,923,334 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367148,523,510 - 148,554,272 (+)NCBINCBI36Build 36hg18NCBI36
Build 347148,330,201 - 148,360,975NCBI
Celera7143,561,753 - 143,592,540 (+)NCBICelera
Cytogenetic Map7q36.1NCBI
HuRef7142,969,580 - 143,000,319 (+)NCBIHuRef
CHM1_17148,900,975 - 148,931,740 (+)NCBICHM1_1
T2T-CHM13v2.07150,377,373 - 150,408,083 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27148,230,571 - 148,261,360 (+)NCBI
Zfp282
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39647,853,433 - 47,885,419 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl647,854,138 - 47,885,419 (+)EnsemblGRCm39 Ensembl
GRCm38647,877,209 - 47,908,485 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl647,877,204 - 47,908,485 (+)EnsemblGRCm38mm10GRCm38
MGSCv37647,827,554 - 47,858,484 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36647,807,142 - 47,836,553 (+)NCBIMGSCv36mm8
Celera648,407,118 - 48,438,141 (+)NCBICelera
Cytogenetic Map6B2.3NCBI
cM Map622.94NCBI
Zfp282
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8478,215,940 - 78,241,193 (+)NCBIGRCr8
mRatBN7.2476,884,996 - 76,910,250 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl476,884,924 - 76,911,370 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx482,097,066 - 82,123,516 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0477,871,404 - 77,897,854 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0476,312,869 - 76,339,319 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0477,554,269 - 77,580,714 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl477,554,269 - 77,580,714 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04142,223,904 - 142,250,349 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4476,010,887 - 76,037,332 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1476,282,531 - 76,312,340 (+)NCBI
Celera471,833,408 - 71,859,856 (+)NCBICelera
Cytogenetic Map4q24NCBI
ZNF282
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26185,779,474 - 185,810,240 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1737,789,738 - 37,820,504 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07140,923,285 - 140,954,041 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17153,400,836 - 153,430,257 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7153,400,957 - 153,459,887 (+)Ensemblpanpan1.1panPan2
ZNF282
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11614,239,286 - 14,268,057 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1614,239,438 - 14,265,719 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1614,848,210 - 14,876,885 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01615,953,532 - 15,982,221 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1615,953,059 - 15,979,936 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11614,334,110 - 14,362,767 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01614,915,293 - 14,943,961 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01614,965,024 - 14,993,706 (+)NCBIUU_Cfam_GSD_1.0
Znf282
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244051187,589,244 - 7,612,708 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365275,290,179 - 5,314,380 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365275,290,721 - 5,314,185 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF282
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11855,495,145 - 55,521,307 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21860,758,354 - 60,784,477 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF282
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121117,753,726 - 117,783,723 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21117,753,828 - 117,785,025 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607213,704,571 - 13,734,460 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf282
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248006,549,311 - 6,576,720 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248006,549,311 - 6,576,720 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000002113   ⟹   ENSCLAP00000002068
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554914,458,051 - 4,479,143 (+)Ensembl
RefSeq Acc Id: XM_013504590   ⟹   XP_013360044
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554914,457,963 - 4,480,732 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013360044 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000002068
  ENSCLAP00000002068.1
RefSeq Acc Id: XP_013360044   ⟸   XM_013504590
- Sequence:
Ensembl Acc Id: ENSCLAP00000002068   ⟸   ENSCLAT00000002113
Protein Domains
C2H2-type   KRAB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000001502 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000002113 ENTREZGENE
  ENSCLAT00000002113.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel_C2H2_ZnF UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene LOC102027864 ENTREZGENE
PANTHER KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 282 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A8C2UMT6_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-08-25 Znf282  zinc finger protein 282  LOC102027864  uncharacterized LOC102027864  Symbol and/or name change 5135510 APPROVED