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Gene: Ttc4 (tetratricopeptide repeat domain 4) Chinchilla lanigera

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Symbol:

Ttc4

Name:

tetratricopeptide repeat domain 4

RGD ID:

8711762

Description:

INVOLVED IN defense response to virus (ortholog); innate immune response (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

tetratricopeptide repeat protein 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955464	4,629,932 - 4,669,333 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955464	4,629,061 - 4,669,054 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

defense response to virus (ISO)

innate immune response (ISO)

Cellular Component

cytoplasm (ISO)

nucleus (ISO)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Ttc4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955464	4,629,932 - 4,669,333 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955464	4,629,061 - 4,669,054 (-)	NCBI	ChiLan1.0	ChiLan1.0

TTC4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	54,715,861 - 54,742,657 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	54,715,861 - 54,742,657 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	55,181,534 - 55,208,330 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	54,954,117 - 54,980,569 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	54,893,576 - 54,920,001	NCBI
Celera	1	53,469,087 - 53,495,920 (+)	NCBI		Celera
Cytogenetic Map	1	p32.3	NCBI
HuRef	1	53,295,157 - 53,322,784 (+)	NCBI		HuRef
CHM1_1	1	55,296,858 - 55,323,691 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	54,596,115 - 54,622,890 (+)	NCBI		T2T-CHM13v2.0

Ttc4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	106,514,952 - 106,536,188 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	106,519,453 - 106,536,141 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	106,656,806 - 106,679,002 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	106,662,256 - 106,678,944 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	106,334,413 - 106,351,549 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	106,160,188 - 106,176,814 (-)	NCBI		MGSCv36	mm8
Celera	4	105,024,628 - 105,041,763 (-)	NCBI		Celera
Cytogenetic Map	4	C7	NCBI
cM Map	4	49.68	NCBI

Ttc4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	126,673,535 - 126,691,203 (-)	NCBI		GRCr8
mRatBN7.2	5	121,444,712 - 121,462,381 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	121,445,740 - 121,462,287 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	124,063,423 - 124,081,060 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	125,786,475 - 125,804,112 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	125,837,736 - 125,855,373 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	126,264,758 - 126,282,431 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	126,264,105 - 126,282,385 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	130,109,141 - 130,127,441 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	127,746,728 - 127,756,081 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	127,751,976 - 127,761,307 (-)	NCBI
Celera	5	120,201,186 - 120,210,532 (-)	NCBI		Celera
Cytogenetic Map	5	q34	NCBI

TTC4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	172,092,298 - 172,118,317 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	171,233,183 - 171,259,181 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	53,992,074 - 54,018,030 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	55,581,396 - 55,607,646 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	55,581,396 - 55,607,646 (+)	Ensembl	panpan1.1		panPan2

TTC4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	54,406,216 - 54,431,742 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	54,407,287 - 54,431,687 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	54,475,489 - 54,500,962 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	54,594,550 - 54,619,793 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	54,590,047 - 54,619,822 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	54,590,989 - 54,616,219 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	54,481,088 - 54,506,291 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	54,870,103 - 54,895,370 (-)	NCBI		UU_Cfam_GSD_1.0

Ttc4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	68,857,176 - 68,884,945 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936522	6,529,122 - 6,559,292 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936522	6,525,887 - 6,559,147 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TTC4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	157,616,502 - 157,651,655 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	157,616,499 - 157,651,676 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	145,680,005 - 145,715,186 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TTC4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	78,193,416 - 78,222,430 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	78,190,147 - 78,222,349 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	39,060,341 - 39,088,741 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ttc4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624862	5,097,343 - 5,126,537 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624862	5,097,233 - 5,126,555 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005398518	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005398519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001236700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01049992	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01123002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000025443 ⟹ ENSCLAP00000025197

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955464	4,629,932 - 4,669,333 (-)	Ensembl

RefSeq Acc Id:

XM_005398518 ⟹ XP_005398575

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955464	4,629,061 - 4,669,053 (-)	NCBI

Sequence:

show sequence

CCGCGCCGCCGGAAGCGGCCGCGCAGCTTCCGAGCCCCAGCGGGCGGCCCGGGAACAGCCATGG
AGGGCTCTCAGCCGGACGCTGCGGACGACAGGCACATGGACGCGTTCCTGGACAAGTTCCGGAG
CCAGCCTTACCGCGGCGGCTTCCACGAGGATCAGTGGGAGGAGGAATTTGACAAGATTCCCTTA
TTTATGAAGAAAGCACCATCAGAAGTTGATCCCAAGGAGAATCCTGACTTGGCTTGCCTCCAGT
CAATTATTTTTGATGAGGAGCGATCTCCAGAAGAACAAGCCAAGACCTATAAAGATGAGGGCAA
TGACTACTTTAAAGAAAAAGACTATAAGAAAGCTGTGATCTCATACACTGAAGGTTTGAAGAAG
AAATGTGTAGACCCTGACTTGAATGCTGTCCTTTACACCAACCGAGCAGCAGCACAGTACTATC
TGGGCAATTTTCGTTCTGCTCTCAATGATGTGATGGCTGCCCGAAAGCTAAAGCCCCACCACCT
CAAAGCCATAACGAGAGGTGCCCTGTGCCATCTAGAACTGAAACACTTTGCCGAGGCTGTGAGC
TGGTGTGACGAGGGGCTGCATATAGATGCCAAGGAGAAGAAGCTTCTGGAAGTGCGGGCTAAAG
CAGACAAGCTGAAGCGAACTGAACAGAGAGATGTGAGGAAAGCAAAGCTGAAAGAAAAGAAGGA
GCAAAATCAGAACGAGGCTTTACTCCAGGCCATCAAGGTCAGGAACATCAGGCTCATATCCGAA
GCTGCTGGTGAGGATGAAGATACCGCCTCAGAAGGTCTAGGCGAGATTTTCCTGGATGGGCTCA
GCTCTGAGAACCCTTATGGTGCCAGGCTGAGTCTGGATGACCGGGGCAGGTTGAGCTGGCCTGT
GCTGTTCCTGTACCCAGAATATGCCCAGTCGGACTTCATCTCTGCTTTTCATGAGGACTCCAGG
TTTATTGATCATCTAATGGTGATGTTTGGTGAAACGCCCTCTTGGGACTCAGAGCAAAAATACT
GCCCGGATAATCTGGAGGTCTACTTTGAGGATGAGGACAGGACAGAACTATACCAGGTGCCTCC
CAAGAGCACCCTGCTGCAGGTGCTGCAGCATCCCAGGTACTTTGTAAAAGCCCTGACTCCAGCA
TTTCTGATCTGTGTAGGGGCCTCTCCTTTTTGCAAGAATTTTCTCCAAGGGAGAAAGGTGCACC
GGGTAAAGTGACAGAGCCAGGCTATGCGAGCCAGGTCCCTGCCTCGTGTTCCTCACCATCTTGA
ACAGCTGGAGACACTCCTAGAACCCAGCACTTTTGTTCTGTCCCTGTGGGGACATTCTTTCCTA
GCCTCAAGCAGGGGAAGGAGCTGCTGACTTCCCTACTCTGTGGCCTCTCTGGCCATTACTCTCT
TCAGGGGAGGCACAGCTCTGTACCCGGCTGTGATGTCCCGGCAGTGTGTCTGTGAGGAAACCAC
CTGCCACGTTTACCACAGCAACTGACTGAGTGAGTTGCCAGCCTGTGGATACCACTCTGGACAT
TGTGACAGATGCCACAAGAAGCCTTCAAGAAGATGCCCCTCCAGCGCAGTAACCAACTCTGAGG
AATTCTAAAGCCTGAAGGCTCAGCTGACCTGGTTCCCAGTTGTTTCACCACCATGGAAGGGAGC
TGTGTGGGGAGCTGTATACTATGGGACAGCTGGAACCGTGGAAGGCCCTGCCTGTCTCTGTCTA
CTGCTCAGACGCTGCCAATTTCTTCATCTCTGCAGTATGAGAACTGTGAGGGACAGTGGCCTCC
AACTTTCATTCCAGTTTTCACATGTGAGGATTGTGTGCCTGTTTGGGATGGGGCCTCACAATAT
TCCCCAGGCTGGTCTCAAACTCCTGGGCTCAAATGATTCTTCTGCCTCACCCTCCTAAGTGCTG
CAACTGACTACAGGTGCACACCCCTGCACCTGGCTAGGATTTTAGGCCATTTAAACTAGAAAAT
CTTGCTGGGCGTGGAGGTGCACCTCTTTAATCCCAGCACTTGGGAGGGTGAAGCAGGAGAATCA
CTGAGTCAAGGCTGGCTTGCAACATATAGCAACACCCTGTCTCAAAAAAA

hide sequence

RefSeq Acc Id:

XM_005398519 ⟹ XP_005398576

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955464	4,629,061 - 4,668,961 (-)	NCBI

Sequence:

show sequence

CAGGCACATGGACGCGTTCCTGGACAAGTTCCGGAGCCAGCCTTACCGCGGCGGCTTCCACGAG
GATCAGTGGGAGGAGTCCAGGAATTTGACAAGATTCCCTTATTTATGAAGAAAGCACCATCAGA
AGTTGATCCCAAGGAGAATCCTGACTTGGCTTGCCTCCAGTCAATTATTTTTGATGAGGAGCGA
TCTCCAGAAGAACAAGCCAAGACCTATAAAGATGAGGGCAATGACTACTTTAAAGAAAAAGACT
ATAAGAAAGCTGTGATCTCATACACTGAAGGTTTGAAGAAGAAATGTGTAGACCCTGACTTGAA
TGCTGTCCTTTACACCAACCGAGCAGCAGCACAGTACTATCTGGGCAATTTTCGTTCTGCTCTC
AATGATGTGATGGCTGCCCGAAAGCTAAAGCCCCACCACCTCAAAGCCATAACGAGAGGTGCCC
TGTGCCATCTAGAACTGAAACACTTTGCCGAGGCTGTGAGCTGGTGTGACGAGGGGCTGCATAT
AGATGCCAAGGAGAAGAAGCTTCTGGAAGTGCGGGCTAAAGCAGACAAGCTGAAGCGAACTGAA
CAGAGAGATGTGAGGAAAGCAAAGCTGAAAGAAAAGAAGGAGCAAAATCAGAACGAGGCTTTAC
TCCAGGCCATCAAGGTCAGGAACATCAGGCTCATATCCGAAGCTGCTGGTGAGGATGAAGATAC
CGCCTCAGAAGGTCTAGGCGAGATTTTCCTGGATGGGCTCAGCTCTGAGAACCCTTATGGTGCC
AGGCTGAGTCTGGATGACCGGGGCAGGTTGAGCTGGCCTGTGCTGTTCCTGTACCCAGAATATG
CCCAGTCGGACTTCATCTCTGCTTTTCATGAGGACTCCAGGTTTATTGATCATCTAATGGTGAT
GTTTGGTGAAACGCCCTCTTGGGACTCAGAGCAAAAATACTGCCCGGATAATCTGGAGGTCTAC
TTTGAGGATGAGGACAGGACAGAACTATACCAGGTGCCTCCCAAGAGCACCCTGCTGCAGGTGC
TGCAGCATCCCAGGTACTTTGTAAAAGCCCTGACTCCAGCATTTCTGATCTGTGTAGGGGCCTC
TCCTTTTTGCAAGAATTTTCTCCAAGGGAGAAAGGTGCACCGGGTAAAGTGACAGAGCCAGGCT
ATGCGAGCCAGGTCCCTGCCTCGTGTTCCTCACCATCTTGAACAGCTGGAGACACTCCTAGAAC
CCAGCACTTTTGTTCTGTCCCTGTGGGGACATTCTTTCCTAGCCTCAAGCAGGGGAAGGAGCTG
CTGACTTCCCTACTCTGTGGCCTCTCTGGCCATTACTCTCTTCAGGGGAGGCACAGCTCTGTAC
CCGGCTGTGATGTCCCGGCAGTGTGTCTGTGAGGAAACCACCTGCCACGTTTACCACAGCAACT
GACTGAGTGAGTTGCCAGCCTGTGGATACCACTCTGGACATTGTGACAGATGCCACAAGAAGCC
TTCAAGAAGATGCCCCTCCAGCGCAGTAACCAACTCTGAGGAATTCTAAAGCCTGAAGGCTCAG
CTGACCTGGTTCCCAGTTGTTTCACCACCATGGAAGGGAGCTGTGTGGGGAGCTGTATACTATG
GGACAGCTGGAACCGTGGAAGGCCCTGCCTGTCTCTGTCTACTGCTCAGACGCTGCCAATTTCT
TCATCTCTGCAGTATGAGAACTGTGAGGGACAGTGGCCTCCAACTTTCATTCCAGTTTTCACAT
GTGAGGATTGTGTGCCTGTTTGGGATGGGGCCTCACAATATTCCCCAGGCTGGTCTCAAACTCC
TGGGCTCAAATGATTCTTCTGCCTCACCCTCCTAAGTGCTGCAACTGACTACAGGTGCACACCC
CTGCACCTGGCTAGGATTTTAGGCCATTTAAACTAGAAAATCTTGCTGGGCGTGGAGGTGCACC
TCTTTAATCCCAGCACTTGGGAGGGTGAAGCAGGAGAATCACTGAGTCAAGGCTGGCTTGCAAC
ATATAGCAACACCCTGTCTCAAAAAAA

hide sequence

RefSeq Acc Id:

XR_001236700

Type:

NON-CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955464	4,631,960 - 4,669,054 (-)	NCBI

Sequence:

show sequence

GCCGCGCCGCCGGAAGCGGCCGCGCAGCTTCCGAGCCCCAGCGGGCGGCCCGGGAACAGCCATG
GAGGGCTCTCAGCCGGACGCTGCGGACGACAGGCACATGGACGCGTTCCTGGACAAGTTCCGGA
GCCAGCCTTACCGCGGCGGCTTCCACGAGGATCAGTGGGAGGAGGAATTTGACAAGATTCCCTT
ATTTATGAAGAAAGCACCATCAGAAGTTGATCCCAAGGAGAATCCTGACTTGGCTTGCCTCCAG
TCAATTATTTTTGATGAGGAGCGATCTCCAGAAGAACAAGCCAAGACCTATAAAGATGAGGGCA
ATGACTACTTTAAAGAAAAAGACTATAAGAAAGCTGTGATCTCATACACTGAAGGTTTGAAGAA
GAAATGTGTAGACCCTGACTTGAATGCTGTCCTTTACACCAACCGAGCAGCAGCACAGTACTAT
CTGGGCAATTTTCGTTCTGCTCTCAATGATGTGATGGCTGCCCGAAAGCTAAAGCCCCACCACC
TCAAAGCCATAACGAGAGGTGCCCTGTGCCATCTAGAACTGAAACACTTTGCCGAGGCTGTGAG
CTGGTGTGACGAGGGGCTGCATATAGATGCCAAGGAGAAGAAGCTTCTGGAAGTGCGGGCTAAA
GCAGACAAGCTGAAGCGAACTGAACAGAGAGATGTGAGGAAAGCAAAGCTGAAAGAAAAGAAGG
AGCAAAATCAGAACGAGGCTTTACTCCAGGCCATCAAGGTCAGGAACATCAGGCTCATATCCGA
AGCTGCTGGTGAGGATGAAGATACCGCCTCAGAAGGTCTAGGCGAGATTTTCCTGGATGGGCTC
AGCTCTGAGAACCCTTATGGTGCCAGGCTGAGTCTGGATGACCGGGGCAGGTTGAGCTGGCCTG
TGCTGTTCCTGTACCCAGAATATGCCCAGTCGGACTTCATCTCTGCTTTTCATGAGGACTCCAG
GTTTATTGATCATCTAATGGTGATGTTTGGTGAAACGCCCTCTTGGGACTCAGAGCAAAAATAC
TGCCCGGATAATCTGGAGTACTAGAGATGGTCCTTGTGGTGGGTTAACCACTGGTGGTCAACTT
ATAACCCCCAGCTGAACTGAGTCTACTTTGAGGATGAGGACAGGACAGAACTATACCAGGTGCC
TCCCAAGAGCACCCTGCTGCAGGTGCTGCAGCATCCCAGGT

hide sequence

Protein Sequences


Protein RefSeqs	XP_005398575	(Get FASTA)	NCBI Sequence Viewer
	XP_005398576	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000025197
	ENSCLAP00000025197.1

RefSeq Acc Id:	XP_005398575 ⟸ XM_005398518
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2W4V3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEGSQPDAADDRHMDAFLDKFRSQPYRGGFHEDQWEEEFDKIPLFMKKAPSEVDPKENPDLACL QSIIFDEERSPEEQAKTYKDEGNDYFKEKDYKKAVISYTEGLKKKCVDPDLNAVLYTNRAAAQY YLGNFRSALNDVMAARKLKPHHLKAITRGALCHLELKHFAEAVSWCDEGLHIDAKEKKLLEVRA KADKLKRTEQRDVRKAKLKEKKEQNQNEALLQAIKVRNIRLISEAAGEDEDTASEGLGEIFLDG LSSENPYGARLSLDDRGRLSWPVLFLYPEYAQSDFISAFHEDSRFIDHLMVMFGETPSWDSEQK YCPDNLEVYFEDEDRTELYQVPPKSTLLQVLQHPRYFVKALTPAFLICVGASPFCKNFLQGRKV HRVK hide sequence

RefSeq Acc Id:

XP_005398576 ⟸ XM_005398519

- Peptide Label:

isoform X2

- Sequence:

show sequence

MKKAPSEVDPKENPDLACLQSIIFDEERSPEEQAKTYKDEGNDYFKEKDYKKAVISYTEGLKKK
CVDPDLNAVLYTNRAAAQYYLGNFRSALNDVMAARKLKPHHLKAITRGALCHLELKHFAEAVSW
CDEGLHIDAKEKKLLEVRAKADKLKRTEQRDVRKAKLKEKKEQNQNEALLQAIKVRNIRLISEA
AGEDEDTASEGLGEIFLDGLSSENPYGARLSLDDRGRLSWPVLFLYPEYAQSDFISAFHEDSRF
IDHLMVMFGETPSWDSEQKYCPDNLEVYFEDEDRTELYQVPPKSTLLQVLQHPRYFVKALTPAF
LICVGASPFCKNFLQGRKVHRVK

hide sequence

Ensembl Acc Id:

ENSCLAP00000025197 ⟸ ENSCLAT00000025443

Protein Domains

Cns1/TTC4 wheel

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000017302	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000025443	ENTREZGENE
	ENSCLAT00000025443.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.10	UniProtKB/TrEMBL
InterPro	Csn1/TTC4_wheel	UniProtKB/TrEMBL
	TPR-like_helical_dom_sf	UniProtKB/TrEMBL
	TPR_repeat	UniProtKB/TrEMBL
NCBI Gene	Ttc4	ENTREZGENE
PANTHER	TETRATRICOPEPTIDE REPEAT PROTEIN 4	UniProtKB/TrEMBL
	TETRATRICOPEPTIDE REPEAT PROTEIN 4	UniProtKB/TrEMBL
Pfam	Wheel	UniProtKB/TrEMBL
SMART	TPR	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48452	UniProtKB/TrEMBL
UniProt	A0A8C2W4V3	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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