Cimap2 (ciliary microtubule associated protein 2)

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Gene: Cimap2 (ciliary microtubule associated protein 2) Chinchilla lanigera

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Symbol:

Cimap2

Name:

ciliary microtubule associated protein 2

RGD ID:

8701964

Description:

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

chromosome unknown open reading frame, human C1orf177; Lexm; LOC102025445; lymphocyte expansion molecule; uncharacterized protein C1orf177 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955464	4,571,830 - 4,589,777 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955464	4,571,161 - 4,589,879 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data

Cimap2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955464	4,571,830 - 4,589,777 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955464	4,571,161 - 4,589,879 (-)	NCBI	ChiLan1.0	ChiLan1.0

CIMAP2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	54,806,063 - 54,842,252 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	54,806,063 - 54,842,252 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	55,271,736 - 55,307,925 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	55,044,324 - 55,080,513 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	53,559,332 - 53,595,605 (+)	NCBI		Celera
Cytogenetic Map	1	p32.3	NCBI
HuRef	1	53,385,919 - 53,421,839 (+)	NCBI		HuRef
CHM1_1	1	55,387,091 - 55,423,678 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	54,686,281 - 54,722,525 (+)	NCBI		T2T-CHM13v2.0

Cimap2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	106,448,105 - 106,474,594 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	106,448,106 - 106,474,438 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	106,590,908 - 106,617,397 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	106,590,909 - 106,617,241 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	106,263,514 - 106,289,843 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	106,088,841 - 106,115,170 (-)	NCBI		MGSCv36	mm8
Celera	4	104,951,806 - 104,978,292 (-)	NCBI		Celera
Cytogenetic Map	4	C7	NCBI
cM Map	4	49.67	NCBI

Cimap2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	126,604,814 - 126,630,692 (-)	NCBI		GRCr8
mRatBN7.2	5	121,375,998 - 121,401,869 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	121,375,998 - 121,401,869 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	123,988,653 - 124,014,584 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	125,711,701 - 125,737,630 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	125,762,973 - 125,788,896 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	126,196,071 - 126,221,916 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	126,196,071 - 126,221,916 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	130,042,066 - 130,066,959 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	127,669,766 - 127,695,667 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	120,124,466 - 120,150,105 (-)	NCBI		Celera
Cytogenetic Map	5	q34	NCBI

CIMAP2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	171,982,420 - 172,028,493 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	171,123,844 - 171,169,429 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	54,081,853 - 54,118,848 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	55,670,773 - 55,707,376 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

CIMAP2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	54,330,982 - 54,356,524 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	54,330,322 - 54,357,409 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	54,399,862 - 54,425,402 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	54,518,142 - 54,544,402 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	54,509,172 - 54,545,270 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	54,515,634 - 54,541,121 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	54,404,981 - 54,431,232 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	54,793,717 - 54,819,888 (-)	NCBI		UU_Cfam_GSD_1.0

Cimap2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	68,936,579 - 68,962,384 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936522	6,456,423 - 6,479,654 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936522	6,456,423 - 6,479,654 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CIMAP2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	157,532,779 - 157,552,413 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	157,532,139 - 157,552,542 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	145,596,345 - 145,617,365 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CIMAP2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	78,091,021 - 78,134,561 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	78,118,675 - 78,129,762 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	39,151,873 - 39,189,649 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cimap2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624862	5,038,584 - 5,048,371 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624862	5,029,117 - 5,048,318 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005398511	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01049992	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01122493	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000015736 ⟹ ENSCLAP00000015574

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955464	4,571,830 - 4,589,777 (-)	Ensembl

RefSeq Acc Id:

XM_005398511 ⟹ XP_005398568

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955464	4,571,161 - 4,589,879 (-)	NCBI

Sequence:

show sequence

TGGTTGCCGTGGCAGCCGGGGGCGGGTGGCGGTAGCCAGCGGGGTGCAGACTGGAGAGGCCGCG
GTGACAGGAGCGCCACCCTGGCTCCCGGGGGACCTCGCCGCTCAGAGGGTGCGAGCACCATGTC
GGTCGCTACCAAGTGGTTCCGAGGGGCGCCCTTTGGGGTGCAGAGCCACAGGTTTGATGTCTCC
GCCGTTTATCCCAACCAGAAGAAGTGCAGCACCTTCACGGAGGCCCCGTACTCCCGGAGTCATT
CTGTGGAGGTGTCCCACATAGGCCCTGGGACCTACAGCTGCAGGGAGACCTGCTTCAGCAAGAA
GAAGCTGAAGAAGGAGGTGGGCACAGGCTGGGCCCGGGCCCAGGAAGCAGCCCGGCTCACCCAG
CTGCCCCACTTCCGGTACGAGGCCCTCTTGAAAGAAAGACGGCTGCAGGCGCAGAAGCTGGGGC
CTGGCTCCTACAACCTCAAAGACTTCCTGGAAGAGCTGCAGCAGAAGCCAAGCAGCACGCGGGG
GCTGCTAAGCTCCGGGGAGACCCGCTTCTCAGGTCTCGTGGGGAACTACTATCCAGGCCCTGGG
AATTATGGGGAGAAGGGCAACCCATACACACAGCTGGAGGAGAAGGCCTGGAACCGGTCCCACG
CCGAGGGCCTCATGTGCAAGATGTCCAACAAGCCTCATCCCCAGTCTCATCAGGGGAGCGGCCT
GGGGCCCAACACCTACTCCATCAAAAGCAGCATCGACGAGTACCTGGCTCGCTCTGCGGGCACC
CGAGGGCCCTATGACATTTTCTCCGGTGACAGAAGCAAGCCCCTGCCTTATGGACATTACTCTG
AGCAGAAAAAAAAGCCCAGGGAACTGATGAATTTCCAGAGTTTTGTGGAGGAACTTAACTCACG
TTACAAGAAGAAGCATGGGGTTTTTTCAAAGCTTCCCCGAAATCCGGACCCTTCCCCAGAGAGG
ATTAACTGGTCCCCTCTTAGCCAGTGTCCCCGGAAACTAGCTACTTCTGGTCCAGGTACCTGGC
TTCCCCAGGAGACAGCATGCAAACATGTGAACCCGCCACCATTCCCCTTGGCCTCAGAGCGCTC
AGGCGTAAAGGCATGCCAGACAGTTCCAGAGATCTGGAACCCAGTAGGGGTGGGCCGCTACCTC
AACATCATGAGGATGGAGACCAAGGACNACAGGCAGTGGTACCGGTCCCTGTACCTGGGTGGAT
CTAAGCACTACCCTGCAGACCCAGCTTGGGACAGGGTCCTGCAGGAAAGGATTACACCTGTTAC
GAAGGGCAAGTGCCGTCCAGCTGTGGATTATAACTCAGATCCCACTCCTTAGAGCCTCATGGAA
AGAACAACCTGTAACCCAAGGCCCAAAGACAAATCTGGTGGTGGGAGGATGGGAATGGGATTCT
TGGGGGAAAGATACTTGATGCGTGGGAGGGGGAGAGATGTGGAGGGGTCACCCTGGTGAAGCCA
TAGACCAGCTGTTGGGACAGCTGGGGATGGATACATTCTGTTACAAGAGATCAGTTGTCCTGGG
AATTCCAACCAGCCAGTGACACGAATGTGGGAGCCCAGACAGCAGATGAACCTACAGACTGGAG
TGTGGGTGACCCCCATAACCCTCCTACTGTAAGACCAGAGTGCTGGCTCCCTCTCATTAAAGTC
CAAAAGGAAGGGGCAGAGTGTAGCCTATGTCACATGTAGCCCTAGGCCACTGCAAGAATACCCC
ACCCCTTCTCAGGATCTCTGGATGCTCAAGGGGCCTCTTGCCTGTGTCTAGTCATTGGGCACAG
CTGGTAGCTCTACCCCCAGTGTGGCTCAAAGGCAGGCCTGGGGGTAGAGGCCTGGGGGGACGGT
TGGTGAGCACATCCAGTTTCTTCATCAGTGTTTCTCATCAGTAAGCGACTGGCTGGGATGGGTA
GTGGGCCATCCCTAGAGAAGATCCTGGGACCCCACAGCTTCAGCCACAAAATCTGCAGAACAAT
AAAAATACTTCACTTTC

hide sequence

Protein Sequences


Protein RefSeqs	XP_005398568	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000015574
	ENSCLAP00000015574.1

RefSeq Acc Id:

XP_005398568 ⟸ XM_005398511

- UniProtKB:

A0A8C2VH91 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSVATKWFRGAPFGVQSHRFDVSAVYPNQKKCSTFTEAPYSRSHSVEVSHIGPGTYSCRETCFS
KKKLKKEVGTGWARAQEAARLTQLPHFRYEALLKERRLQAQKLGPGSYNLKDFLEELQQKPSST
RGLLSSGETRFSGLVGNYYPGPGNYGEKGNPYTQLEEKAWNRSHAEGLMCKMSNKPHPQSHQGS
GLGPNTYSIKSSIDEYLARSAGTRGPYDIFSGDRSKPLPYGHYSEQKKKPRELMNFQSFVEELN
SRYKKKHGVFSKLPRNPDPSPERINWSPLSQCPRKLATSGPGTWLPQETACKHVNPPPFPLASE
RSGVKACQTVPEIWNPVGVGRYLNIMRMETKDXRQWYRSLYLGGSKHYPADPAWDRVLQERITP
VTKGKCRPAVDYNSDPTP

hide sequence

Ensembl Acc Id:

ENSCLAP00000015574 ⟸ ENSCLAT00000015736

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000010705	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000015736	ENTREZGENE
	ENSCLAT00000015736.1	UniProtKB/TrEMBL
InterPro	LEXM	UniProtKB/TrEMBL
NCBI Gene	LOC102025445	ENTREZGENE
PANTHER	LYMPHOCYTE EXPANSION MOLECULE	UniProtKB/TrEMBL
	PTHR34914	UniProtKB/TrEMBL
UniProt	A0A8C2VH91	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-05-09	Cimap2	ciliary microtubule associated protein 2	Lexm	lymphocyte expansion molecule	Symbol and/or name change	5135510	APPROVED
2016-08-16	Lexm	lymphocyte expansion molecule	LOC102025445	chromosome unknown open reading frame, human C1orf177	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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