Rubie (RNA upstream of Bmp4 expressed in inner ear) - Rat Genome Database

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Gene: Rubie (RNA upstream of Bmp4 expressed in inner ear) Mus musculus
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Symbol: Rubie
Name: RNA upstream of Bmp4 expressed in inner ear
RGD ID: 8693267
MGI Page MGI
Description: Acts upstream of or within semicircular canal development. Is expressed in several structures, including embryo mesoderm; heart; and inner ear.
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: REVIEWED
Previously known as: Gm15219; Gm1584; predicted gene 15219; predicted gene, OTTMUSG00000019528
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391446,805,788 - 46,813,308 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1446,805,720 - 46,835,882 (-)EnsemblGRCm39 Ensembl
GRCm381446,568,331 - 46,575,851 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1446,568,263 - 46,598,425 (-)EnsemblGRCm38mm10GRCm38
MGSCv371447,189,819 - 47,195,522 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv371447,189,819 - 47,195,522 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361447,189,819 - 47,195,522 (-)NCBIMGSCv36mm8
Celera1442,739,164 - 42,746,688 (-)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1424.11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
RubieMouseequilibrioception acts_upstream_ofIMP 2290270 PMID:22253730MGIPMID:22253730
RubieMousesemicircular canal development acts_upstream_of_or_withinIMP 2290270 PMID:22253730MGIPMID:22253730


#
Reference Title
Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
PMID:12466851   PMID:22253730   PMID:24200680   PMID:24316575   PMID:27899360   PMID:31784461  



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Variants in Rubie
189 total Variants

1 to 10 of 25 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
27226775Tibl7_mtibia length 7, 5 week (mouse)143032195748837457Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300544Hypn_mhyperinsulinemia (mouse)Not determined141516061649160765Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
4141864Mrdq4_mmodifier of retinal degeneration QTL 4 (mouse)Not determined992324548765082Mouse

1 to 10 of 25 rows






Ensembl Acc Id: ENSMUST00000151828
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1446,806,047 - 46,813,304 (-)Ensembl
GRCm38.p6 Ensembl1446,568,590 - 46,575,847 (-)Ensembl
Ensembl Acc Id: ENSMUST00000226162
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1446,806,041 - 46,835,882 (-)Ensembl
GRCm38.p6 Ensembl1446,568,584 - 46,598,425 (-)Ensembl
Ensembl Acc Id: ENSMUST00000227803
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1446,805,720 - 46,825,440 (-)Ensembl
GRCm38.p6 Ensembl1446,568,263 - 46,587,983 (-)Ensembl
RefSeq Acc Id: NR_046459
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391446,805,788 - 46,813,308 (-)NCBI
GRCm381446,568,331 - 46,575,851 (-)NCBI
Celera1442,739,164 - 42,746,688 (-)NCBI
Sequence:
RGD ID:8682050
Promoter ID:EPDNEW_M19056
Type:single initiation site
Name:Rubie_1
Description:Mus musculus RNA upstream of Bmp4 expressed in inner ear , longnon-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381446,575,851 - 46,575,911EPDNEW
RGD ID:15094427
Promoter ID:EPDNEWNC_M2336
Type:single initiation site
Name:Rubie_1
Description:RNA upstream of Bmp4 expressed in inner ear [Source:MGISymbol;Acc:MGI:5568573]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381446,575,851 - 46,575,911EPDNEWNC


1 to 9 of 9 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000085123 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000151828 ENTREZGENE
MGD MGI:5568573 ENTREZGENE
NCBI Gene Rubie ENTREZGENE
PhenoGen Rubie PhenoGen
RNAcentral URS000075C265 RNACentral
  URS0000CC269D RNACentral
  URS0000CC7C0E RNACentral
  URS0000CCB007 RNACentral
1 to 9 of 9 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-08 Rubie  RNA upstream of Bmp4 expressed in inner ear  Gm15219  predicted gene 15219  Symbol and/or name change 5135510 APPROVED
2018-05-01 Gm15219  predicted gene 15219  Gm15219  predicted gene 15219  Data merged from RGD:2295861 737654 PROVISIONAL
2018-05-01 Gm15219  predicted gene 15219  Rubie  RNA upstream of Bmp4 expressed in inner ear  Symbol and/or name change 5135510 APPROVED