LINC01352 (long intergenic non-protein coding RNA 1352) - Rat Genome Database

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Gene: LINC01352 (long intergenic non-protein coding RNA 1352) Homo sapiens
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Symbol: LINC01352
Name: long intergenic non-protein coding RNA 1352
RGD ID: 8656230
HGNC Page HGNC:50578
Description: ASSOCIATED WITH Usher syndrome
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381220,829,255 - 220,832,429 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1220,829,255 - 220,832,429 (+)EnsemblGRCh38hg38GRCh38
GRCh371221,002,597 - 221,005,771 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1q41NCBI
HuRef1191,677,218 - 191,680,392 (+)NCBIHuRef
CHM1_11222,275,064 - 222,278,238 (+)NCBICHM1_1
T2T-CHM13v2.01220,068,972 - 220,072,146 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
LINC01352HumanUsher syndrome  IAGPRGD:134354448554872ClinVar Annotator: match by term: Usher syndromeClinVarPMID:28041643

PMID:12477932  



.

1 to 10 of 12 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 1q32.2-44(chr1:209963625-248918469)x3 copy number gain See cases [RCV000134979] Chr1:209963625..248918469 [GRCh38]
Chr1:210136970..249212668 [GRCh37]
Chr1:208203593..247179291 [NCBI36]
Chr1:1q32.2-44		 pathogenic
GRCh38/hg38 1q41(chr1:220673535-223683512)x1 copy number loss See cases [RCV000135795] Chr1:220673535..223683512 [GRCh38]
Chr1:220846877..223871214 [GRCh37]
Chr1:218913500..221937837 [NCBI36]
Chr1:1q41		 pathogenic
GRCh38/hg38 1q32.1-42.12(chr1:204764914-225408698)x3 copy number gain See cases [RCV000142054] Chr1:204764914..225408698 [GRCh38]
Chr1:204734042..225596400 [GRCh37]
Chr1:203000665..223663023 [NCBI36]
Chr1:1q32.1-42.12		 pathogenic
GRCh38/hg38 1q32.2-44(chr1:207346642-248930485)x3 copy number gain See cases [RCV000143727] Chr1:207346642..248930485 [GRCh38]
Chr1:207519987..249224684 [GRCh37]
Chr1:205586610..247191307 [NCBI36]
Chr1:1q32.2-44		 pathogenic
GRCh38/hg38 1q41(chr1:215206760-222004068)x1 copy number loss See cases [RCV000148255] Chr1:215206760..222004068 [GRCh38]
Chr1:215380103..222177410 [GRCh37]
Chr1:213446726..220244033 [NCBI36]
Chr1:1q41		 pathogenic
GRCh38/hg38 1q32.3-44(chr1:214023812-248918469)x3 copy number gain See cases [RCV000050981] Chr1:214023812..248918469 [GRCh38]
Chr1:214197155..249212668 [GRCh37]
Chr1:212263778..247179291 [NCBI36]
Chr1:1q32.3-44		 pathogenic
GRCh38/hg38 1q41(chr1:215206760-222004068)x1 copy number loss See cases [RCV000050298] Chr1:215206760..222004068 [GRCh38]
Chr1:215380103..222177410 [GRCh37]
Chr1:213446726..220244033 [NCBI36]
Chr1:1q41		 pathogenic
GRCh38/hg38 1q31.1-42.11(chr1:187143981-224299417)x3 copy number gain See cases [RCV000051857] Chr1:187143981..224299417 [GRCh38]
Chr1:187113113..224487119 [GRCh37]
Chr1:185379736..222553742 [NCBI36]
Chr1:1q31.1-42.11		 pathogenic
GRCh38/hg38 1q32.2-44(chr1:209646207-248931113)x3 copy number gain See cases [RCV000051861] Chr1:209646207..248931113 [GRCh38]
Chr1:209819552..249225312 [GRCh37]
Chr1:207886175..247191935 [NCBI36]
Chr1:1q32.2-44		 pathogenic
GRCh38/hg38 1q41(chr1:215447347-221971832)x3 copy number gain See cases [RCV000051874] Chr1:215447347..221971832 [GRCh38]
Chr1:215620690..222145174 [GRCh37]
Chr1:213687313..220211797 [NCBI36]
Chr1:1q41		 pathogenic
1 to 10 of 12 rows

Predicted Target Of
Summary Value
Count of predictions:102
Count of miRNA genes:101
Interacting mature miRNAs:102
Transcripts:ENST00000431347
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
1194 2211 2746 2123 4296 1524 2073 4 512 1165 372 2014 6067 5510 10 3339 748 1541 1445 144



Ensembl Acc Id: ENST00000431347
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1220,829,255 - 220,832,429 (+)Ensembl
RefSeq Acc Id: NR_110797
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381220,829,255 - 220,832,429 (+)NCBI
CHM1_11222,275,064 - 222,278,238 (+)NCBI
T2T-CHM13v2.01220,068,972 - 220,072,146 (+)NCBI
Sequence:


Database
Acc Id
Source(s)
COSMIC LINC01352 COSMIC
Ensembl Genes ENSG00000238078 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000431347 ENTREZGENE
GTEx ENSG00000238078 GTEx
HGNC ID HGNC:50578 ENTREZGENE
Human Proteome Map LINC01352 Human Proteome Map
NCBI Gene LINC01352 ENTREZGENE
RNAcentral URS000014FB6A RNACentral