LOC102551813 (stathmin-like) - Rat Genome Database

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Gene: LOC102551813 (stathmin-like) Rattus norvegicus
Analyze
Symbol: LOC102551813
Name: stathmin-like
RGD ID: 7697767
Description: Predicted to be involved in regulation of microtubule polymerization or depolymerization. Predicted to be located in cytoplasm and microtubule.
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8896,217,025 - 96,222,032 (-)NCBIGRCr8
mRatBN7.2887,337,008 - 87,342,005 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0894,041,562 - 94,047,034 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0893,555,402 - 93,560,874 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera886,941,393 - 86,946,391 (-)NCBICelera
Cytogenetic Map8q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
LOC102551813Ratregulation of microtubule polymerization or depolymerization involved_inIEAInterPro:IPR000956 and InterPro:IPR0360021600115GO_REF:0000002InterProGO_REF:0000002

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
LOC102551813Ratcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
LOC102551813Ratcytoskeleton located_inIEAUniProtKB-SubCell:SL-00901600115GO_REF:0000044UniProtGO_REF:0000044
LOC102551813Ratcytoskeleton located_inIEAUniProtKB-KW:KW-02061600115GO_REF:0000043UniProtGO_REF:0000043
LOC102551813Ratmicrotubule located_inIEAUniProtKB-KW:KW-04931600115GO_REF:0000043UniProtGO_REF:0000043



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Variants in LOC102551813
28 total Variants

1 to 10 of 42 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
12879878Bw183Body weight QTL 1830.001body mass (VT:0001259)body weight (CMO:0000012)84329616998968765Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)854259986100382532Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
1549908Neudeg1Neurodegradation QTL 15.50nervous system integrity trait (VT:0010566)logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)83018886794457446Rat
12879879Cm99Cardiac mass QTL 990.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)84329616998968765Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
1578769Uae31Urinary albumin excretion QTL 313.30.001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)830848154101699754Rat
12879880Cm100Cardiac mass QTL 1000.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)84329616998968765Rat
12879881Cm101Cardiac mass QTL 1010.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)84329616998968765Rat

1 to 10 of 42 rows






RefSeq Acc Id: XM_039082789   ⟹   XP_038938717
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8896,217,025 - 96,222,032 (-)NCBI
mRatBN7.2887,337,008 - 87,342,005 (-)NCBI
Protein RefSeqs XP_038938717 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000068006.2
  ENSRNOP00000083571.1
RefSeq Acc Id: XP_038938717   ⟸   XM_039082789
- UniProtKB: A0A8I5ZX99 (UniProtKB/TrEMBL),   A0A8L2QYX2 (UniProtKB/TrEMBL)


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 22 of 22 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-29643 BioCyc
Ensembl Genes ENSRNOG00000016810 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000076052.3 UniProtKB/TrEMBL
  ENSRNOT00000105029.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.280.30 UniProtKB/TrEMBL
InterPro Stathmin_CS UniProtKB/TrEMBL
  Stathmin_fam UniProtKB/TrEMBL
  Stathmin_sf UniProtKB/TrEMBL
NCBI Gene LOC102551813 ENTREZGENE
PANTHER STATHMIN UniProtKB/TrEMBL
  STATHMIN UniProtKB/TrEMBL
Pfam Stathmin UniProtKB/TrEMBL
PhenoGen LOC102551813 PhenoGen
PIRSF Stathmin UniProtKB/TrEMBL
PRINTS STATHMIN UniProtKB/TrEMBL
PROSITE STATHMIN_1 UniProtKB/TrEMBL
  STATHMIN_2 UniProtKB/TrEMBL
  STATHMIN_3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016810 RatGTEx
Superfamily-SCOP Stathmin UniProtKB/TrEMBL
UniProt A0A8I5ZX99 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2QYX2 ENTREZGENE, UniProtKB/TrEMBL
1 to 22 of 22 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-18 LOC102551813  stathmin-like      Symbol and Name status set to provisional 70820 PROVISIONAL