LOC102546393 (uncharacterized LOC102546393) - Rat Genome Database

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Gene: LOC102546393 (uncharacterized LOC102546393) Rattus norvegicus
Analyze
Symbol: LOC102546393
Name: uncharacterized LOC102546393
RGD ID: 7670659
Description:
Type: ncrna
RefSeq Status: MODEL
Previously known as: LOC108353224; uncharacterized LOC108353224
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81968,555,841 - 68,569,509 (+)NCBIGRCr8
mRatBN7.21951,661,450 - 51,671,801 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01956,452,201 - 56,463,008 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01967,164,552 - 67,173,904 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1951,037,857 - 51,049,149 (+)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC102546393
75 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)194997648153225766Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)194434021455283277Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_001834736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001834737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001834738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001834739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001834740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001842346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001842347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001842348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001842349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001842350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005496934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010060509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010060510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010060511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010060512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XR_005496934
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81968,557,731 - 68,569,431 (+)NCBI
mRatBN7.21951,661,450 - 51,671,801 (+)NCBI
RefSeq Acc Id: XR_010060509
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81968,555,892 - 68,565,416 (+)NCBI
RefSeq Acc Id: XR_010060510
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81968,555,841 - 68,569,509 (+)NCBI
RefSeq Acc Id: XR_010060511
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81968,555,901 - 68,565,416 (+)NCBI
RefSeq Acc Id: XR_010060512
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81968,555,893 - 68,565,416 (+)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-5273 BioCyc
NCBI Gene LOC102546393 ENTREZGENE
PhenoGen LOC102546393 PhenoGen
RNAcentral URS0000CCE5E5 RNACentral
  URS0000CCEF4D RNACentral
  URS0000CCF907 RNACentral
  URS0000CCFDE7 RNACentral
  URS0000CD0342 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 LOC102546393  uncharacterized LOC102546393  LOC108353224  uncharacterized LOC108353224  Data merged from RGD:11374488 737654 PROVISIONAL
2016-08-02 LOC108353224  uncharacterized LOC108353224      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-12-18 LOC102546393  uncharacterized LOC102546393      Symbol and Name status set to provisional 70820 PROVISIONAL