Eif4a1-ps5 (eukaryotic translation initiation factor 4A1, pseudogene 5) - Rat Genome Database

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Gene: Eif4a1-ps5 (eukaryotic translation initiation factor 4A1, pseudogene 5) Rattus norvegicus
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Symbol: Eif4a1-ps5
Name: eukaryotic translation initiation factor 4A1, pseudogene 5
RGD ID: 7621680
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: eukaryotic initiation factor 4A-I-like; LOC102555130; LOC680539; similar to eukaryotic translation initiation factor 4A, isoform 1
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr816,580,617 - 6,582,064 (+)NCBIGRCr8
mRatBN7.214,760,376 - 4,761,823 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.014,451,825 - 4,453,286 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.016,116,209 - 6,117,748 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.415,011,347 - 5,013,175 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera13,296,077 - 3,297,551 (+)NCBICelera
Cytogenetic Map1p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Eif4a1-ps5
6 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1132356093Rat
1578650Bmd6Bone mineral density QTL 612.2femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)150910843284926Rat
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
1578651Bmd7Bone mineral density QTL 714.2femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)150910843284926Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1439328949393289Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1224439043433040Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
1578669Bss9Bone structure and strength QTL 96.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)150910843284926Rat
1300170Rf6Renal function QTL 63.14renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)1416280711481482Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-62414 BioCyc
NCBI Gene LOC102555130 ENTREZGENE
PhenoGen Eif4a1-ps5 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Eif4a1-ps5  eukaryotic translation initiation factor 4A1, pseudogene 5  LOC102555130  eukaryotic initiation factor 4A-I-like  Symbol and Name Changed 1299863 APPROVED
2015-07-29 LOC102555130  eukaryotic initiation factor 4A-I-like  LOC680539  similar to eukaryotic translation initiation factor 4A, isoform 1  Data merged from RGD:1590621 737654 PROVISIONAL
2013-12-18 LOC102555130  eukaryotic initiation factor 4A-I-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC680539  similar to eukaryotic translation initiation factor 4A, isoform 1      Symbol and Name status set to provisional 70820 PROVISIONAL