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Gene: Tmf1-ps1 (TATA element modulatory factor 1, pseudogene 1) Rattus norvegicus

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Symbol:

Tmf1-ps1

Name:

TATA element modulatory factor 1, pseudogene 1

RGD ID:

7607903

Description:

Type:

pseudo

RefSeq Status:

MODEL

Previously known as:

LOC102548101; TATA element modulatory factor-like

Related Functional Gene:

Tmf1

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	133,476,875 - 133,479,851 (-)	NCBI		GRCr8
mRatBN7.2	3	113,022,599 - 113,027,243 (-)	NCBI	mRatBN7.2	mRatBN7.2
Rnor_6.0	3	118,039,696 - 118,042,469 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	3	124,564,216 - 124,566,459 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	3	111,878,477 - 111,881,250 (-)	NCBI		Celera
Cytogenetic Map	3	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Variants in Tmf1-ps1
15 total Variants

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312673	Scl63	Serum cholesterol level QTL 63		0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	98535255	168026850	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	70653097	121056321	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
2302373	Gluco39	Glucose level QTL 39	5.01		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	3	98535386	161695835	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	53184593	115665732	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	31172320	163586636	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	47233211	147415807	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	38192233	133483320	Rat
1582216	Bw65	Body weight QTL 65	6.3		body mass (VT:0001259)	body weight (CMO:0000012)	3	102200529	115665732	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	29463235	118376539	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	53184593	115665732	Rat
1582219	Bw63	Body weight QTL 63	3.8	0.001	body mass (VT:0001259)	body weight (CMO:0000012)	3	96127817	115665732	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	64655305	115665732	Rat
1581568	Rf53	Renal function QTL 53			urine total protein amount (VT:0000032)	urine protein excretion rate to body weight ratio (CMO:0001099)	3	56395968	161299569	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	64655305	115665732	Rat
7387306	Bw124	Body weight QTL 124	3.2	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	3	84091273	129091273	Rat
1578754	Stresp16	Stress response QTL 16	4	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	3	112681431	157681431	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	61017749	121056321	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	50437504	115638231	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	73376539	118376539	Rat
8694437	Bw167	Body weight QTL 167	22.46	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	3	91797474	136797474	Rat
2302273	Gluco35	Glucose level QTL 35	5.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	80800231	114297550	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	59242096	157323038	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	43827364	169034231	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	43827364	121056321	Rat
1354611	Despr2	Despair related QTL 2	3.03	0.0028	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	3	97084464	142084464	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	89772419	134772419	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	94856903	159898684	Rat
619618	Rf3	Renal disease susceptibility QTL 3	6.5	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate to body weight ratio (CMO:0001270)	3	107693393	152693393	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	70348525	121056321	Rat
2301971	Cm71	Cardiac mass QTL 71	4.63		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	3	41874578	155617519	Rat
2312659	Slep7	Serum leptin concentration QTL 7		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	3	98535255	168026850	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
2301970	Bw81	Body weight QTL 81	5.19		body mass (VT:0001259)	body weight (CMO:0000012)	3	41874578	155617519	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	78196190	146592722	Rat
631665	Bw8	Body weight QTL 8	5.5		body mass (VT:0001259)	body weight (CMO:0000012)	3	50437042	119183768	Rat
1331758	Bp207	Blood pressure QTL 207	2.848		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	112287552	135181505	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
2293087	Iddm27	Insulin dependent diabetes mellitus QTL 27	2.68		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	97551417	147415807	Rat
2312670	Bw94	Body weight QTL 94		0.01	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	3	98535255	168026850	Rat
724532	Cm17	Cardiac mass QTL 17	2		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	3	95735366	140735366	Rat

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_008762223	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008775505	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_008762223 ⟹ XP_008760445

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	118,039,696 - 118,042,469 (-)	NCBI

Sequence:

show sequence

CCGAACGCCGGGCGGCCACGGGAGGTGGTGGGCCGGGGCCACCGCTGAGGCCGCCGGTGCCGGCCGGACCCGGCGCTGAGGAGGGGCCATGAGCTGGTTCAATGCCTCGCAGTTGTCCAGCTTCGCCA
AGCAGGCCCTGTCCCAGGCCCAGAAGTCCATCGACAGGGTCCTGGACATCCAGGAGGAAGAGCCGAGCGCCTGGGCCGAGGCCATCCCGTACGGTGAGCCAGACAGTTGAATTTCTGAATGAGAAGCT
AGAAAAGAGGGAGACTCAATTATTGTCACTTAGTAAGGAAAAGGCACTTCTAGCTTATGATAACCTGAAGGATGAAATGTTCAGAGTAAAAGAAGAAAGTGGTAGCATTTCTTCCCTGAAAGATGAGT
TTACCCAGAGGATCGCAGAAGCAGAAAGGAAAGCTCAACTCGCCTGAAAAGAGAGAGACACTGCGAAGAAGGAAATGAAAACCATGAAGGAAGAACTTGCCTCTAGATTAAATAGTAGTCAGACTGCA
GACCTTCTGAAGGAAAAGGATGAACAGATTCAAGGCTTAATGGAAGAAGGAGAAAAACTTTCGAAGCAGCAGCTGCATAATTCCAACATGATTAAGAAATTAAGAGCTAAGGATAAAGACAATGAAAG
TGTTATTGCAAAGCTGAAGAAAAAAGCTAAGGAGCTGGAAGAGGAGCTACAGCATTTAAGACAGGTCCTTGATGGCAAAGAAGAGGTTGAAAAACAACATAGAGAAAACATTAAAAAACTAAATTCTG
TAGTAGAACGCCAGGAAAAAGATCTTGGCCGACTTCAGGTAGACATGAATGAACTTGAAGAAAAGAGCCGAAGTCCTCAGGCTGCCCTAGACAGTGCCTACAGAGAACTTACTGATCTTCACAAAGCC
AATGCTGCTAAGGACACTGAGGTACAGGCTGCTCTGAGGCGTGAGATGAAANGTAAAGAAGAACTTTCTGGGGCACTGGAGAAGGCCCAGGAAGAAGCCCGTCAGCAGCAAGAGACTTTAGCACTTCA
GGTGGGGGACCTTAGGCTAGCGCTGCAACGGGCAGAGCAAGCAGCTGCCAGGAAAGAGGATTACTTACGCCATGAGATCAGTGAACTTCAGCAGAGACTCCAAGAAGCAGAGAATCGAAACCAGGAGC
TGAGTCAAAGTGTTTCATCAACAACAAGACCTTTGCTTCGACAGATAGAAAATTTACAAGCAACTCTAGGATCCCAGACATCGTCATGGGAGATGCTAGAGAAGAATCTTTCTGATCGGCTCGGTGAA
TCACAGACCTTGTTGGCTGCAGCAGTTGAAAGAGAACGTGCAGCTACGGAAGAACTCCTAGCCAACAAAATCCAGATGTCTTCAGTGGAGTCGCAGAATGCATTACTACGACAGGAAAACAGTAGACT
GCAGGCCCAGCTAGAGTCAGAGAAAAATAAATTAAGAAAACTAGAGGATGAAAATAGCCGGTACCAGGTTGAATTAGAAAATCTAAAAGATGAATATGTAAGAACACTTGAAGAGGCAAGGAAAGAAA
AGACACTTTTGAGCAGTCAGTTAGAAATGGAAAGAATGAAAGTTGAACAAGAAAGGAAGAAAACCATTTTCACTCAAGAAACACTAAAAGAAAAGGACCACAAGCCGTTTTCCGTTTCTAGTACTCCC
ACCATGTCACGATCCAGTTCTCTAAGTGGAGTAGATATGGCAGGGCTGCAGACATCCTTCCTATCTCAGGATGAGTCTCACGACCATTCATTTGGGCCAGTGTCTACGTCAGCCAGTGGAAGCAATCT
TTATGAAGCTGTAAGGATGGGAGCCGGATCAAGCATTATCGAAAATCTTCAGTCTCAGCTAAAGCTGAGGGAAGGAGAAATTAGTCATTTACAGCTAGAAATTAGTAACCTAGAAAAAACTCGATCCA
TAATGTCTGAAGAGCTAGTTAAATTGACAAATCAGAATGATGAACTTGAGGAGAAAGTGAAAGAGATACCCAAGCTTCGAGTTCAGCTGCGAGATTTGGATCAAAGATACAACACTATTCTGCAGATG
TATGGAGAAAAAGCAGAAGCAGAGGAACTTCGCCTGGATCTTGATGTAAAAAATATGTATAAAACTCAAATAGATGAACTTCTAAGACAAAGACTCAGCTAACTTGTGAAGTTTGTGTTCCATCAAAC
TAATGTAAACACTTATATATAAATGCAGACGTACAATAAATTCTTCTACAGAATTAGAAACTTGGATTTGCTGTAGATTGTAAAAAAAACTTTTTAAAAATTCTTTTATAGTACATAGTGATATTTGC
AGTTAAATTATTTTATGTAATATTTGAATTTTATTTTTGAAATTGTTCTTTAAAATTTTATTTTTTAAAGCTTTTTTTTTCTTTTTGGTGCCTTGAACAGCACAGAGATTTATTACTTTATCCACTTA
TCAGTACAGCTAGGAAAGGAGATTGGTGTTTCGTATTATTGTGGATACATAATTAATTGTATTGTATCTAATTTGTATGTGTTTGTACATATTGAGAGATTTACAGAGTAATGTTAACATGGAAATTT
TGAAATCTTTCACATTGAAATCTTCAACATATTTCTTAAAAATGTTTTAAGCATTTGAGTAAAAAGGTTATTAAGCCTATGACTACTAAATTATAAACTGTTTTCCTTTAAAAGCAGAAGTCACACTG
ACATGTCTAAAATTTAAAGAGTAATTTAAACTTAAAAAATATCTCTGTTTTGAAAATTTATTCCATGTATCTTCCACAATGAAGTAT

hide sequence

RefSeq Acc Id:

XM_008775505 ⟹ XP_008773727

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Celera	3	111,878,477 - 111,881,250 (-)	NCBI

Sequence:

show sequence

CCGAACGCCGGGCGGCCACGGGAGGTGGTGGGCCGGGGCCACCGCTGAGGCCGCCGGTGCCGGCCGGACCCGGCGCTGAGGAGGGGCCATGAGCTGGTTCAATGCCTCGCAGTTGTCCAGCTTCGCCA
AGCAGGCCCTGTCCCAGGCCCAGAAGTCCATCGACAGGGTCCTGGACATCCAGGAGGAAGAGCCGAGCGCCTGGGCCGAGGCCATCCCGTACGGTGAGCCAGACAGTTGAATTTCTGAATGAGAAGCT
AGAAAAGAGGGAGACTCAATTATTGTCACTTAGTAAGGAAAAGGCACTTCTAGCTTATGATAACCTGAAGGATGAAATGTTCAGAGTAAAAGAAGAAAGTGGTAGCATTTCTTCCCTGAAAGATGAGT
TTACCCAGAGGATCGCAGAAGCAGAAAGGAAAGCTCAACTCGCCTGAAAAGAGAGAGACACTGCGAAGAAGGAAATGAAAACCATGAAGGAAGAACTTGCCTCTAGATTAAATAGTAGTCAGACTGCA
GACCTTCTGAAGGAAAAGGATGAACAGATTCAAGGCTTAATGGAAGAAGGAGAAAAACTTTCGAAGCAGCAGCTGCATAATTCCAACATGATTAAGAAATTAAGAGCTAAGGATAAAGACAATGAAAG
TGTTATTGCAAAGCTGAAGAAAAAAGCTAAGGAGCTGGAAGAGGAGCTACAGCATTTAAGACAGGTCCTTGATGGCAAAGAAGAGGTTGAAAAACAACATAGAGAAAACATTAAAAAACTAAATTCTG
TAGTAGAACGCCAGGAAAAAGATCTTGGCCGACTTCAGGTAGACATGAATGAACTTGAAGAAAAGAGCCGAAGTCCTCAGGCTGCCCTAGACAGTGCCTACAGAGAACTTACTGATCTTCACAAAGCC
AATGCTGCTAAGGACACTGAGGTACAGGCTGCTCTGAGGCGTGAGATGAAANGTAAAGAAGAACTTTCTGGGGCACTGGAGAAGGCCCAGGAAGAAGCCCGTCAGCAGCAAGAGACTTTAGCACTTCA
GGTGGGGGACCTTAGGCTAGCGCTGCAACGGGCAGAGCAAGCAGCTGCCAGGAAAGAGGATTACTTACGCCATGAGATCAGTGAACTTCAGCAGAGACTCCAAGAAGCAGAGAATCGAAACCAGGAGC
TGAGTCAAAGTGTTTCATCAACAACAAGACCTTTGCTTCGACAGATAGAAAATTTACAAGCAACTCTAGGATCCCAGACATCGTCATGGGAGATGCTAGAGAAGAATCTTTCTGATCGGCTCGGTGAA
TCACAGACCTTGTTGGCTGCAGCAGTTGAAAGAGAACGTGCAGCTACGGAAGAACTCCTAGCCAACAAAATCCAGATGTCTTCAGTGGAGTCGCAGAATGCATTACTACGACAGGAAAACAGTAGACT
GCAGGCCCAGCTAGAGTCAGAGAAAAATAAATTAAGAAAACTAGAGGATGAAAATAGCCGGTACCAGGTTGAATTAGAAAATCTAAAAGATGAATATGTAAGAACACTTGAAGAGGCAAGGAAAGAAA
AGACACTTTTGAGCAGTCAGTTAGAAATGGAAAGAATGAAAGTTGAACAAGAAAGGAAGAAAACCATTTTCACTCAAGAAACACTAAAAGAAAAGGACCACAAGCCGTTTTCCGTTTCTAGTACTCCC
ACCATGTCACGATCCAGTTCTCTAAGTGGAGTAGATATGGCAGGGCTGCAGACATCCTTCCTATCTCAGGATGAGTCTCACGACCATTCATTTGGGCCAGTGTCTACGTCAGCCAGTGGAAGCAATCT
TTATGAAGCTGTAAGGATGGGAGCCGGATCAAGCATTATCGAAAATCTTCAGTCTCAGCTAAAGCTGAGGGAAGGAGAAATTAGTCATTTACAGCTAGAAATTAGTAACCTAGAAAAAACTCGATCCA
TAATGTCTGAAGAGCTAGTTAAATTGACAAATCAGAATGATGAACTTGAGGAGAAAGTGAAAGAGATACCCAAGCTTCGAGTTCAGCTGCGAGATTTGGATCAAAGATACAACACTATTCTGCAGATG
TATGGAGAAAAAGCAGAAGCAGAGGAACTTCGCCTGGATCTTGATGTAAAAAATATGTATAAAACTCAAATAGATGAACTTCTAAGACAAAGACTCAGCTAACTTGTGAAGTTTGTGTTCCATCAAAC
TAATGTAAACACTTATATATAAATGCAGACGTACAATAAATTCTTCTACAGAATTAGAAACTTGGATTTGCTGTAGATTGTAAAAAAAACTTTTTAAAAATTCTTTTATAGTACATAGTGATATTTGC
AGTTAAATTATTTTATGTAATATTTGAATTTTATTTTTGAAATTGTTCTTTAAAATTTTATTTTTTAAAGCTTTTTTTTTCTTTTTGGTGCCTTGAACAGCACAGAGATTTATTACTTTATCCACTTA
TCAGTACAGCTAGGAAAGGAGATTGGTGTTTCGTATTATTGTGGATACATAATTAATTGTATTGTATCTAATTTGTATGTGTTTGTACATATTGAGAGATTTACAGAGTAATGTTAACATGGAAATTT
TGAAATCTTTCACATTGAAATCTTCAACATATTTCTTAAAAATGTTTTAAGCATTTGAGTAAAAAGGTTATTAAGCCTATGACTACTAAATTATAAACTGTTTTCCTTTAAAAGCAGAAGTCACACTG
ACATGTCTAAAATTTAAAGAGTAATTTAAACTTAAAAAATATCTCTGTTTTGAAAATTTATTCCATGTATCTTCCACAATGAAGTAT

hide sequence

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-48034	BioCyc
NCBI Gene	LOC102548101	ENTREZGENE
PhenoGen	Tmf1-ps1	PhenoGen

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-06-10	Tmf1-ps1	TATA element modulatory factor 1, pseudogene 1	LOC102548101	TATA element modulatory factor-like	Symbol and Name Changed	1299863	APPROVED
2013-12-18	LOC102548101	TATA element modulatory factor-like			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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