LOC102550600 (uncharacterized LOC102550600) - Rat Genome Database

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Gene: LOC102550600 (uncharacterized LOC102550600) Rattus norvegicus
Analyze
Symbol: LOC102550600
Name: uncharacterized LOC102550600
RGD ID: 7581426
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81966,872,555 - 66,881,149 (+)NCBIGRCr8
mRatBN7.21949,963,865 - 49,972,967 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1949,963,942 - 49,970,781 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01954,722,646 - 54,724,011 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01965,441,729 - 65,447,465 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1949,208,863 - 49,210,228 (+)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC102550600
49 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)194434021455283277Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000093975
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1949,963,942 - 49,970,781 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000099241
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1949,963,942 - 49,966,708 (+)Ensembl
RefSeq Acc Id: XR_005497042
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81966,872,555 - 66,881,149 (+)NCBI
mRatBN7.21949,963,865 - 49,972,967 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-5410 BioCyc
Ensembl Genes ENSRNOG00000067306 Ensembl
NCBI Gene LOC102550600 ENTREZGENE
PhenoGen LOC102550600 PhenoGen
RatGTEx ENSRNOG00000067306 RatGTEx
RNAcentral URS0000CCFEF8 RNACentral
  URS00022B20BF RNACentral
  URS00022B4DB4 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-18 LOC102550600  uncharacterized LOC102550600      Symbol and Name status set to provisional 70820 PROVISIONAL